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Software Tool Article
Revised  wigExplorer, a BioJS component to visualise wig data [v2; ref status: approved with reservations 1, not approved 1, http://f1000r.es/3kq]
PUBLISHED: 30 May 2014
Authors: Anil S. Thanki, Rafael C. Jimenez, Gemy G. Kaithakottil, Manuel Corpas, Robert P. Davey
Referees: Robert Buels; Phil Lord
F1000Research 2014, 3:53 (doi: 10.12688/f1000research.3-53.v2)
Web Tool
Revised  FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences [v2; ref status: indexed, http://f1000r.es/38v]
PUBLISHED: 09 Apr 2014
Authors: Leyla Garcia, Guy Yachdav, Maria-Jesus Martin
Referees: Jim Procter; Andreas Prlic
F1000Research 2014, 3:47 (doi: 10.12688/f1000research.3-47.v2)
Editorial
NOT PEER REVIEWED
The BioJS article collection of open source components for biological data visualisation [v1; ref status: not peer reviewed, http://f1000r.es/2y6]
PUBLISHED: 13 Feb 2014
Author: Manuel Corpas F1000Research Advisory Board member
F1000Research 2014, 3:56 (doi: 10.12688/f1000research.3-56.v1)
 
Commentary
BioJS: an open source standard for biological visualisation – its status in 2014 [v1; ref status: indexed, http://f1000r.es/2yy]
PUBLISHED: 13 Feb 2014
Authors: Manuel Corpas, Rafael Jimenez, Seth J Carbon, Alex García, Leyla Garcia, Tatyana Goldberg, John Gomez, Alexis Kalderimis, Suzanna E Lewis, Ian Mulvany, Aleksandra Pawlik, Francis Rowland, Gustavo Salazar, Fabian Schreiber, Ian Sillitoe, William H Spooner, Anil S. Thanki, José M Villaveces, Guy Yachdav, Henning Hermjakob
Referees: Phil Bourne; Reinhard Schneider
F1000Research 2014, 3:55 (doi: 10.12688/f1000research.3-55.v1)
Web Tool
DNAContentViewer a BioJS component to visualise GC/AT Content [v1; ref status: approved with reservations 2, http://f1000r.es/2xf]
PUBLISHED: 13 Feb 2014
Authors: Anil S. Thanki, Shabhonam Caim, Manuel Corpas, Robert P. Davey
Referees: Dan Schwartz and Joseph O'Shea; Matus Kalas
F1000Research 2014, 3:54 (doi: 10.12688/f1000research.3-54.v1)
Web Tool
Sequence, a BioJS component for visualising sequences [v1; ref status: indexed, http://f1000r.es/2v9]
PUBLISHED: 13 Feb 2014
Authors: John Gomez, Rafael Jimenez
Referees: Christoph Gille; Jeremy Goecks
F1000Research 2014, 3:52 (doi: 10.12688/f1000research.3-52.v1)
Web Tool
BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs [v1; ref status: indexed, http://f1000r.es/2ut]
PUBLISHED: 13 Feb 2014
Authors: Alexis Kalderimis, Radek Stepan, Julie Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem
Referees: Tom Freeman and Derek Wright; Lynn Fink
F1000Research 2014, 3:51 (doi: 10.12688/f1000research.3-51.v1)
Web Tool
PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5]
PUBLISHED: 13 Feb 2014
Authors: Gustavo A. Salazar, Ayton Meintjes, Nicola Mulder
Referees: Laurent Gatto; Hagen Blankenburg
F1000Research 2014, 3:50 (doi: 10.12688/f1000research.3-50.v1)
Web Tool
treeWidget: a BioJS component to visualise phylogenetic trees [v1; ref status: approved 1, approved with reservations 1, http://f1000r.es/2u4]
PUBLISHED: 13 Feb 2014
Author: Fabian Schreiber
Referees: Jaime Huerta-Cepas; Stephen Smith
F1000Research 2014, 3:49 (doi: 10.12688/f1000research.3-49.v1)
Web Tool
HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6]
PUBLISHED: 13 Feb 2014
Authors: Guy Yachdav, Maximilian Hecht, Metsada Pasmanik-Chor, Adva Yeheskel, Burkhard Rost
Referees: Jordi Deu-Pons; John Ison
F1000Research 2014, 3:48 (doi: 10.12688/f1000research.3-48.v1)
Web Tool
BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints [v1; ref status: approved 1, http://f1000r.es/2us]
PUBLISHED: 13 Feb 2014
Authors: Alexis Kalderimis, Radek Stepan, Julie Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem
Referee: Arnaud Ceol
F1000Research 2014, 3:46 (doi: 10.12688/f1000research.3-46.v1)
Web Tool
BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints [v1; ref status: approved 1, http://f1000r.es/2ur]
PUBLISHED: 13 Feb 2014
Authors: Alexis Kalderimis, Radek Stepan, Julie Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem
Referee: Clemens Wrzodek
F1000Research 2014, 3:45 (doi: 10.12688/f1000research.3-45.v1)
Web Tool
PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers [v1; ref status: indexed, http://f1000r.es/2up]
PUBLISHED: 13 Feb 2014
Authors: Jose M. Villaveces, Rafael C. Jimenez, Bianca H. Habermann
Referees: Christine Orengo; Frederic de Lamotte and Jean-François Dufayard
F1000Research 2014, 3:44 (doi: 10.12688/f1000research.3-44.v1)
Web Tool
KEGGViewer, a BioJS component to visualize KEGG Pathways [v1; ref status: indexed, http://f1000r.es/2uq]
PUBLISHED: 13 Feb 2014
Authors: Jose M. Villaveces, Rafael C. Jimenez, Bianca H. Habermann
Referees: Hedi Peterson and Priit Adler; Alexander Pico
F1000Research 2014, 3:43 (doi: 10.12688/f1000research.3-43.v1)

Per page: 20 | 50 | 100 | 1 - 14 of 14

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Tatyana Goldberg Technical University of Munich
Germany
Manuel Corpas University of Manchester
UK
ABOUT THE EDITORS

BioJS components are pieces of web software mainly written in JavaScript for the visualisation of biological data that can be easily utilised, shared and extended. This channel conveniently groups a number of BioJS articles under a single interface.

A brief description of the component's functionality, design attributes and potential extensions appear in each published article. Although it is not required to publish each individual BioJS component in F1000Research, they are all very welcome to be part of this growing collection. A carefully selected set of components has been chosen for the launch of this channel.

Read the Editorial by Manuel Corpas for more details.

READ MORE
DOI: 10.12688/f1000research.4254.2
Software Tool Article
Revised  WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization [v2; ref status: indexed, http://f1000r.es/49l]
Martina Kutmon, Samad Lotia, Chris T Evelo
+
DOI: 10.12688/f1000research.4642.1
Editorial NOT PEER REVIEWED
The Cytoscape app article collection [v1; ref status: not peer reviewed, http://f1000r.es/3tv]
Alexander R Pico, Gary D Bader, Barry Demchak
+
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