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DOI: 10.12688/f1000research.3-53.v2
Software Tool Article
wigExplorer, a BioJS component to visualise wig data [v2; ref status: approved with reservations 1, not approved 1, http://f1000r.es/3kq]
Anil S. Thanki, Rafael C. Jimenez, Gemy G. Kaithakottil, Manuel Corpas F1000Research Advisory Board member
,
Robert P. Davey
Referees: Robert Buels; Phil Lord
PUBLISHED 30 May 2014
Revised
DOI: 10.12688/f1000research.3-47.v2
Web Tool
FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences [v2; ref status: indexed, http://f1000r.es/38v]
Leyla Garcia, Guy Yachdav, Maria-Jesus Martin
Referees: Jim Procter; Andreas Prlic
PUBLISHED 09 Apr 2014
Revised
DOI: 10.12688/f1000research.3-56.v1
Editorial NOT PEER REVIEWED
The BioJS article collection of open source components for biological data visualisation [v1; ref status: not peer reviewed, http://f1000r.es/2y6]
Manuel Corpas F1000Research Advisory Board member
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-55.v1
Commentary
BioJS: an open source standard for biological visualisation – its status in 2014 [v1; ref status: indexed, http://f1000r.es/2yy]
Manuel Corpas F1000Research Advisory Board member
,
Rafael Jimenez, Seth J Carbon, Alex García, Leyla Garcia, Tatyana Goldberg, John Gomez, Alexis Kalderimis, Suzanna E Lewis, Ian Mulvany, Aleksandra Pawlik, Francis Rowland, Gustavo Salazar, Fabian Schreiber, Ian Sillitoe, William H Spooner, Anil S. Thanki, José M Villaveces, Guy Yachdav, Henning Hermjakob
Referees: Phil Bourne F1000Research Advisory Board member
; Reinhard Schneider
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-54.v1
Web Tool
DNAContentViewer a BioJS component to visualise GC/AT Content [v1; ref status: approved with reservations 2, http://f1000r.es/2xf]
Anil S. Thanki, Shabhonam Caim, Manuel Corpas F1000Research Advisory Board member
,
Robert P. Davey
Referees: Dan Schwartz and Joseph O'Shea; Matus Kalas
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-52.v1
Web Tool
Sequence, a BioJS component for visualising sequences [v1; ref status: indexed, http://f1000r.es/2v9]
John Gomez, Rafael Jimenez
Referees: Christoph Gille; Jeremy Goecks
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-51.v1
Web Tool
BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs [v1; ref status: indexed, http://f1000r.es/2ut]
Alexis Kalderimis, Radek Stepan, Julie Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem
Referees: Tom Freeman and Derek Wright; Lynn Fink
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-50.v1
Web Tool
PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5]
Gustavo A. Salazar, Ayton Meintjes, Nicola Mulder F1000Research Advisory Board member
F1000Prime Faculty Member
Referees: Laurent Gatto; Hagen Blankenburg
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-49.v1
Web Tool
treeWidget: a BioJS component to visualise phylogenetic trees [v1; ref status: approved 1, approved with reservations 1, http://f1000r.es/2u4]
Fabian Schreiber
Referees: Jaime Huerta-Cepas; Stephen Smith
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-48.v1
Web Tool
HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6]
Guy Yachdav, Maximilian Hecht, Metsada Pasmanik-Chor, Adva Yeheskel, Burkhard Rost
Referees: Jordi Deu-Pons; John Ison
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-46.v1
Web Tool
BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints [v1; ref status: approved 1, http://f1000r.es/2us]
Alexis Kalderimis, Radek Stepan, Julie Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem
Referee: Arnaud Ceol
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-45.v1
Web Tool
BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints [v1; ref status: approved 1, http://f1000r.es/2ur]
Alexis Kalderimis, Radek Stepan, Julie Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem
Referee: Clemens Wrzodek
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-44.v1
Web Tool
PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers [v1; ref status: indexed, http://f1000r.es/2up]
Jose M. Villaveces, Rafael C. Jimenez, Bianca H. Habermann
Referees: Christine Orengo; Frederic de Lamotte and Jean-François Dufayard
PUBLISHED 13 Feb 2014
DOI: 10.12688/f1000research.3-43.v1
Web Tool
KEGGViewer, a BioJS component to visualize KEGG Pathways [v1; ref status: indexed, http://f1000r.es/2uq]
Jose M. Villaveces, Rafael C. Jimenez, Bianca H. Habermann
Referees: Hedi Peterson and Priit Adler; Alexander Pico
PUBLISHED 13 Feb 2014

BioJS components are pieces of web software mainly written in JavaScript for the visualisation of biological data that can be easily utilised, shared and extended. This channel conveniently groups a number of BioJS articles under a single interface.

A brief description of the component's functionality, design attributes and potential extensions appear in each published article. Although it is not required to publish each individual BioJS component in F1000Research, they are all very welcome to be part of this growing collection. A carefully selected set of components has been chosen for the launch of this channel.

Read the Editorial by Manuel Corpas for more details.

Tatyana Goldberg Technical University of Munich
Germany
Manuel Corpas The Genome Analysis Centre (TGAC)
UK
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