<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.52652.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Prevalence of urinary tract infections and antibiogram of uropathogens isolated from children under five attending Bagamoyo District Hospital in Tanzania: A cross-sectional study</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 not approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Sangeda</surname>
                        <given-names>Raphael Z.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-6574-5308</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Paul</surname>
                        <given-names>Franco</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-4465-2097</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Mtweve</surname>
                        <given-names>Deus M.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1158-733X</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Pharmaceutical Microbiology, Muhimbili University of Health and Allied Sciences, Dar es Salaam, PO Box 65013, Tanzania</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:sangeda@gmail.com">sangeda@gmail.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>7</day>
                <month>6</month>
                <year>2021</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2021</year>
            </pub-date>
            <volume>10</volume>
            <elocation-id>449</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>28</day>
                    <month>5</month>
                    <year>2021</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2021 Sangeda RZ et al.</copyright-statement>
                <copyright-year>2021</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/10-449/pdf"/>
            <abstract>
                <p>
                    <bold>Background:</bold> Urinary tract infection (UTI) is a common condition in children that recurs frequently. This study aimed to determine the prevalence of UTIs among children under five attending Bagamoyo District Hospital and determine its association with nutritional status.</p>
                <p>
                    <bold>Methods:</bold> This was a cross-sectional study that enrolled 214 children under five years old attending Bagamoyo District Hospital in Tanzania. Midstream urine was collected in sterile conditions and bottles. Samples were transported to the laboratory to isolate bacteria using cysteine lactose electrolyte deficient (CLED) agar.  Identification was undertaken using Gram staining, single iron agar test, sulfide-indole motility (SIM) test, and catalase and oxidase tests. A susceptibility test was done using the disc diffusion method. Anthropometric measurements were employed to assess malnutrition status and body mass index was determined using each child's weight and height.</p>
                <p>
                    <bold>Results:</bold> Of the 214 children under five enrolled in the study, 123 (57.4%) were girls and 91 (42.6%) were boys. A total of 35 children were confirmed UTI-positive, making the prevalence 16.4%. Of positive children, 17 (7.9%) were girls and 18 (8.4%) were boys. The UTI prevalence was higher in boys than in girls but not statistically significant (p=0.244). Among the isolated uropathogens, 
                    <italic toggle="yes">Escherichia coli</italic> were common bacteria accounting for 65.7% of all isolates. The rate of other uropathogens isolated was 
                    <italic toggle="yes">Klebsiella spp</italic>. (17.1%), 
                    <italic toggle="yes">Pseudomonas spp</italic>. 
                    <italic toggle="yes">Proteus spp</italic> (11.4%) and (2.9%) and 
                    <italic toggle="yes">Staphylococci spp.</italic> (2.9%). The antibiogram of the isolated bacterial uropathogens showed high in-vitro resistance ranging from 90-95% to erythromycin, trimethoprim-sulfamethoxazole and ampicillin.</p>
                <p>
                    <bold>Conclusion</bold>: The prevalence of UTI for children under five was 16.4%. The most common causative agent of UTI was 
                    <italic toggle="yes">Escherichia coli</italic>. There was no association between UTI status and malnutrition status of the children. High resistance to antibiotics calls for antimicrobial stewardship and surveillance to preserve antibiotics' effectiveness in treating uropathogens.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>UTI</kwd>
                <kwd>Prevalence</kwd>
                <kwd>children under five</kwd>
                <kwd>antibiogram</kwd>
                <kwd>Bagamoyo</kwd>
                <kwd>Tanzania</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>Urinary tract infection (UTI) is common in children and tends to recur frequently. UTI is ranked the second most prevalent infection after upper respiratory tract infection in children
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>,
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. The recurrence of UTI is more widespread in girls than in boys
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>,
                    <xref ref-type="bibr" rid="ref-4">4</xref>
                </sup>. About 30% of children under five suffer from recurrent UTI within the first twelve months after the first occurrence
                <sup>
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. If not treated, UTI may lead to pyelonephritis and acute morbidity when associated with abnormalities like vesicoureteral and reflux nephropathy in children. In the long run, UTI  may result in parenchymal scarring, hypertension, decreased renal function and renal scarring
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>,
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. For that reason, UTI is a significant contributor to mortality and morbidity in children. However, when recognized and appropriately managed, renal sequelae are rare.</p>
            <p>UTI occurs in 2.4-2.8% of children in the United States annually
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>
                </sup>. The incidence of UTIs is mostly influenced by the host factors such as age and gender. Other risk factors are congenital genitourinary conditions, immature host defenses, lack of circumcision in boys, malnutrition, social status, prior history of UTI, instrumentation, the existence of abnormal urinary tract and the extent of virulence of the etiological agent
                <sup>
                    <xref ref-type="bibr" rid="ref-7">7</xref>,
                    <xref ref-type="bibr" rid="ref-9">9</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-11">11</xref>
                </sup>. In both boys and girls, the prevalence of UTI is high in the first twelve months of life and decreases after that
                <sup>
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. Shaikh and colleagues reported a UTI  prevalence of 7.0% in infants with fever
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>.  In febrile infants aged 0&#x2013;2 months, UTI prevalence in girls and uncircumcised boys was 5% and 20%, respectively
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>. In the first six months, the risk of UTI was 10 to 12 higher in uncircumcised boys
                <sup>
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. Estimates show that about 7.8% of girls and 1.7% of boys develop UTI by the age of seven. At sixteen years of age, 11.3% of girls and 3.6% of boys may suffer from UTI
                <sup>
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>.</p>
            <p>A prompt diagnosis and appropriate treatment are essential to reduce the morbidity and sequelae following a UTI
                <sup>
                    <xref ref-type="bibr" rid="ref-13">13</xref>
                </sup>. However, diagnosis of UTI in children under two years is usually confounded by the non-specific signs and symptoms of UTI
                <sup>
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. Children with uncomplicated UTI may respond to amoxicillin, sulphonamides, trimethoprim-sulfamethoxazole or cephalosporins, concentrating in the lower urinary tract
                <sup>
                    <xref ref-type="bibr" rid="ref-14">14</xref>
                </sup>. Several studies show similar efficacy among the oral and intravenous antibiotics for UTI treatment
                <sup>
                    <xref ref-type="bibr" rid="ref-15">15</xref>
                </sup>. However, studies in high-income countries suggest that UTI causative bacteria increase acquiring resistance to commonly used antibiotics, such as trimethoprim-sulfamethoxazole
                <sup>
                    <xref ref-type="bibr" rid="ref-16">16</xref>,
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup>.</p>
            <p>Gram-negative organisms highly contribute to the proportion of uropathogens isolated from children with UTI
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>,
                    <xref ref-type="bibr" rid="ref-18">18</xref>
                </sup>. 
                <italic toggle="yes">Escherichia coli</italic> accounts for up to 90% of infections
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>
                </sup>. Other uropathogens commonly isolated in UTI include 
                <italic toggle="yes">Klebsiella pneumoniae, Proteus mirabilis, Citrobacter, Pseudomonas aeruginosa, Enterobacter aerogenes, Enterococcus species</italic> and 
                <italic toggle="yes">Serratia species</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref-18">18</xref>
                </sup>. 
                <italic toggle="yes">Proteus mirabilis</italic> is more commonly found in boys compared to girls
                <sup>
                    <xref ref-type="bibr" rid="ref-19">19</xref>
                </sup>. 
                <italic toggle="yes">Streptococcus agalactiae</italic> is commonly isolated from newborns
                <sup>
                    <xref ref-type="bibr" rid="ref-20">20</xref>
                </sup>. 
                <italic toggle="yes">Staphylococcus saprophyticus</italic> is isolated in sexually active female adolescents and contributes to 15% of UTI cases
                <sup>
                    <xref ref-type="bibr" rid="ref-21">21</xref>
                </sup>.</p>
            <p>Malnutrition is a major risk factor for child mortality and adult ill-health. Malnutrition could increase the risk of serious infections
                <sup>
                    <xref ref-type="bibr" rid="ref-22">22</xref>
                </sup>. Malnutrition is still a problem Bagamoyo district in Tanzania due to poor living conditions among people living within and around Bagamoyo
                <sup>
                    <xref ref-type="bibr" rid="ref-23">23</xref>
                </sup>. The living condition may predispose an individual to acquire a UTI. However, the association between malnutrition and the acquisition of UTI has not been studied in this setting. This study was undertaken to determine the prevalence of UTI, antibiotic susceptibility testing of uropathogens and assess the association between UTI acquisition and nutritional status among children under five attending Bagamoyo District Hospital in Tanzania.</p>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <sec>
                <title>Study design</title>
                <p>This was a cross-sectional study enrolling symptomatic and asymptomatic children under five attending Bagamoyo District Hospital in Tanzania. The inclusion criteria were age range 12 months to 59 months. The study was conducted from April to July 2017. Convenience sampling was used whereby 214 children under five were recruited to participate in the study. The exclusion criteria were children who had recently taken antibiotics, children who were diabetic or HIV positive, and those out of the inclusion age range.</p>
            </sec>
            <sec>
                <title>Sample size calculation</title>
                <p>The sample size (n) was calculated according to the formula
                    <sup>
                        <xref ref-type="bibr" rid="ref-24">24</xref>
                    </sup> n = z
                    <sup>2</sup> * p * (1 - p) / e
                    <sup>2</sup>, where: z = 1.96 for a confidence level (&#x03b1;) of 95%, p = prevalence and e = margin of error.</p>
                <p>According to a study conducted in Tanzania, the prevalence of UTI in children was 16.8
                    <sup>
                        <xref ref-type="bibr" rid="ref-25">25</xref>
                    </sup>, thus making p = 0.168 and taking e = 0.05. The sample size obtained was 214.</p>
            </sec>
            <sec>
                <title>Ethics statement</title>
                <p>Ethical clearance for this study was granted by the Muhimbili University of Health and Allied Sciences Ethics Review Board number 2017-02-20/AEC/Vol XII/59. The parents or guardians permitted their child to participate in the research study following reading and approving the study information provided by the researcher, and parents or guardians signed the consent on behalf of their child. The parents and guardians were informed and consented to the publication of this manuscript.</p>
            </sec>
            <sec>
                <title>Sample and data collection</title>
                <p>Mid-stream urine samples were collected from the children attending Bagamoyo District Hospital using the widely recommended urine sampling method in children under five, where guardians were instructed to collect a urine sample in sterile conditions
                    <sup>
                        <xref ref-type="bibr" rid="ref-26">26</xref>
                    </sup>. Therefore, when the container was one-third complete, the lid was closed and clean catch mid-stream urine samples in sterile containers were transported immediately to the Pharmaceutical Microbiology laboratory for analysis. During transportation, the temperature of 4-8&#x00b0;C was maintained in a cool box containing ice blocks to control microorganism growth
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>
                    </sup>.</p>
                <p>A semi-structured questionnaire (see 
                    <italic toggle="yes">Extended data</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref-28">28</xref>
                    </sup>), was given to parents or guardians of children under five eligible to participate in this study. The questionnaire collected information about age, gender, type of meal frequently given, and the number of meals per day. We also used the questionnaire to capture height and weight of the children attending the clinic at Bagamoyo District Hospital. Body mass index (BMI) was calculated.</p>
            </sec>
            <sec>
                <title>Isolation</title>
                <p>Isolation of bacterial pathogens from urinary samples was carried out using a calibrated loop method in which a sterile standard loop was used to pick 50&#x00b5;L of urine. A loopful urine sample was plated on cysteine lactose electrolyte deficient (CLED) agar. The inoculated plate was incubated at 37&#x00b0;C overnight. The numbers of isolated bacterial colonies were counted as the colony unit to estimate bacterial load/mL of the urine sample. Any sample specimen that contained a bacterial load of &#x2265;105cfu/ml on the calculation of urine samples using a microscope was considered positive for UTI
                    <sup>
                        <xref ref-type="bibr" rid="ref-29">29</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Bacteria identification</title>
                <p>After 24 hours of incubation of the sample on cysteine lactose electrolyte deficient agar (CLED), the growth of bacterial uropathogens in plates was considered positive. The appearance of colonies was observed and recorded. For non-pure bacterial growth, following the use of a sterilized and calibrated loop, a single colony of the pure colony was picked and sub-cultured on MacConkey's agar and incubated at 37&#x00b0;C.  After the overnight incubation at 37&#x00b0;C, the bacterial growth appearance, including color and morphology, was observed and recorded
                    <sup>
                        <xref ref-type="bibr" rid="ref-30">30</xref>
                    </sup>.</p>
                <p>Bacteria were identified using the Gram stain test, Kliger's iron agar (KIA), sulfide, indole, motility (SIM) media, catalase and oxidase test
                    <sup>
                        <xref ref-type="bibr" rid="ref-31">31</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Susceptibility testing</title>
                <p>The identified uropathogens were subcultured two times before being used for antibiotic susceptibility tests. Antibiotic susceptibility testing was performed as recommended by the Clinical Laboratory Standards Institute guidelines
                    <sup>
                        <xref ref-type="bibr" rid="ref-32">32</xref>
                    </sup>. The method adopted was Kirby Bauer's discs diffusion assay
                    <sup>
                        <xref ref-type="bibr" rid="ref-33">33</xref>
                    </sup>. Mueller Hinton agar was used as media for performing antibiotic susceptibility tests.</p>
                <p>The antibiotic disc was placed onto the media along the parallel lines separating the standard organism and test organism; seven antibiotic discs were tested against the isolated uropathogens. The seven antibiotic discs tested included amoxicillin-clavulanate acid (20/10&#x00b5;g), ceftriaxone (45&#x00b5;g), ampicillin (25&#x00b5;g), erythromycin (15&#x00b5;g), nalidixic (30&#x00b5;g), trimethoprim-sulfamethoxazole (1.25/23.75&#x00b5;g) and nitrofurantoin (30&#x00b5;g). After overnight incubation, the zone of inhibition of each tested antibiotic disc (6mm disc) was measured using a measuring scale
                    <sup>
                        <xref ref-type="bibr" rid="ref-33">33</xref>
                    </sup>.</p>
                <p>The zone of inhibition's measured diameter was interpreted into resistant, intermediate and sensitive as per the National Committee for Clinical Laboratory Standards (NCCLS)
                    <sup>
                        <xref ref-type="bibr" rid="ref-32">32</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Statistical analysis</title>
                <p>Quality control and review of the collected data were ascertained to remove any errors. Demographic data were available for all participants. For participants who tested negative for urinary tract infection, the corresponding laboratory variables were marked as 'NA; to indicate that data was not applicable in the dataset. The cleaned data was entered into the Statistical Package for Social Scientists (SPSS version 20) computer program and subjected to analysis. The data was analyzed to provide frequency tables. The Pearson chi-square test was employed to determine the association between the demographic data and UTI status, taking a P-value &lt; 0.05 as a significant cutoff at a 95% confidence interval.</p>
            </sec>
        </sec>
        <sec sec-type="results">
            <title>Results</title>
            <p>A total of 214 urine samples were obtained from children aged between 12 months and 59 months who visited Bagamoyo District Hospital (see 
                <italic toggle="yes">Underlying data</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref-28">28</xref>
                </sup>), including 123 females and 91 males (
                <xref ref-type="table" rid="T1">Table 1</xref>). Demographic data were available for all the 214 participants, while the laboratory analysis was only done for the 35 samples that tested positive for urinary tract infection.</p>
            <table-wrap id="T1" orientation="portrait" position="anchor">
                <label>Table 1. </label>
                <caption>
                    <title>Urinary tract infection (UTI) status per gender, age, parent job status, children not on breast meal alone, children who were ever breastfed, and body mass index (BMI).</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Variables</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">UTI status
                                <break/>Negative 
                                <break/>N (%)</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Positive
                                <break/>N (%)</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Total
                                <break/>N (%)</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">P-value</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Gender</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Female</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">106 (49.5)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">17 (7.9)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">123 (57.5)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.24</td>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Male</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">73 (34.1)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18 (8.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">91 (42.5)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Total</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">179 (83.6)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35 (16.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">214 (100)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Age  (months)</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">0-12</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">12 (5.6)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4 (1.8)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">16 (7.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.05</td>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">13-24</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">67 (31.3)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">14 (6.5)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">81 (37.8)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">25-36</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">71 (33.2)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">9 (4.2)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">80 (37.3)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">37-48</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">17 (7.9)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">8 (3.7)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">25 (11.6)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">49-59</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">12 (5.6)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0 (0)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">12 (5.6)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Total </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">179 (83.6)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35 (16.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">214 (100)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Taking food other than breast meal</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">No </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3 (1.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0 (0)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3 (1.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.441</td>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Yes </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">176 (82.2)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35 (16.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">211 (98.6)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Total </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">179 (83.6)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35 (16.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">214 (100)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Ever breastfed</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">No </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">127 (59.3)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">21 (9.8)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">148 (69.2)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.584</td>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Yes </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">52 (24.3)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">14 (6.5)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">66 (30.8)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Total </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">179 (83.6)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35 (16.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">214 (100)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Job-status</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">None</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">78 (36.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">20 (9.3)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">98 (45.8)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.34</td>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Self-employed </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">73 (34.1)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11 (5.1)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">84 (39.3)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Government or private employed</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">28 (13.1)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4 (1.8)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">32 (14.9)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Total </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">179 (83.6)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35 (16.4)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">214 (100)</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">BMI</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="right" colspan="1" rowspan="1" valign="top">Mean BMI</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">20.2</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">20.1</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">20.2</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.8</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>The mean age was 27.1 months. The majority of the children (37.8%) were in the age range 13-24 months, followed by 37.3% in the age range 25-36 months (
                <xref ref-type="table" rid="T1">Table 1</xref>).</p>
            <p>The prevalence rate of UTI among children attending Bagamoyo District Hospital was 16.4% (
                <xref ref-type="table" rid="T2">Table 2</xref>).</p>
            <table-wrap id="T2" orientation="portrait" position="anchor">
                <label>Table 2. </label>
                <caption>
                    <title>Status of urinary tract infection (UTI) in children under five at Bagamoyo District Hospital in 2017.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">UTI status</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">N (%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">&#x00a0;&#x00a0;&#x00a0;Negative</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">174 (83.6)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">&#x00a0;&#x00a0;&#x00a0;Positive</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35 (16.4)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">&#x00a0;&#x00a0;&#x00a0;
                                <bold>Total</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>214 (100)</bold>
                            </td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>The most common causative agent of UTI in children attending Bagamoyo district was 
                <italic toggle="yes">E. coli</italic> (65.7%), followed by 
                <italic toggle="yes">Klebsiella spp</italic> (17.1%) (
                <xref ref-type="table" rid="T3">Table 3</xref>).</p>
            <table-wrap id="T3" orientation="portrait" position="anchor">
                <label>Table 3. </label>
                <caption>
                    <title>Bacterial uropathogens isolated from urinary tract infection (UTI) positive children under five at Bagamoyo District Hospital.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Organism</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">N (%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">Proteus spp.</italic>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4 (11.4)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">Escherichia coli</italic> </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">23(65.7) </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">Pseudomonas spp.</italic>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">1 (2.9)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">Klebsiella spp.</italic>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">6 (17.1) </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">Staphylococcus spp.</italic>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">1 (2.9)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Total</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>35 (100.0)</bold>
                            </td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>A proportion of 94.3% of the five uropathogens was resistant to ampicillin, followed by erythromycin and trimethoprim-sulfamethoxazole proportion of resistant isolate 94.3 and 91.4%, respectively (
                <xref ref-type="fig" rid="f1">Figure 1</xref>).</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Proportion of uropathogens resistant to common antibiotics used to treat urinary tract infection (UTI).</title>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/55957/821699af-4fd4-4baf-ade2-353deaba1f3f_figure1.gif"/>
            </fig>
            <p>All 
                <italic toggle="yes">Proteus</italic> species (100%) were resistant to ampicillin and erythromycin (
                <xref ref-type="fig" rid="f2">Figure 2</xref>), while for 
                <italic toggle="yes">E. coli,</italic> the proportion of isolates resistant to these two antibiotics was approximately 90%.</p>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Antibiogram profile of each uropathogen against the seven antibacterial tested Key: AMP=ampicillin; ERY=erythromycin; TRI=trimethoprim-sulfamethoxazole; NAL= nalidixic acid; AMC=amoxicillin-clavulanate; NIT=nitrofurantoin; CEF=ceftriaxone.</title>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/55957/821699af-4fd4-4baf-ade2-353deaba1f3f_figure2.gif"/>
            </fig>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>Urinary tract infections (UTIs) are common causes of mortality and morbidity in children under five
                <sup>
                    <xref ref-type="bibr" rid="ref-34">34</xref>
                </sup>. In this study, the prevalence of UTI in children attending the clinic at Bagamoyo District Hospital was 16.4%. This is comparable to the 16.8% prevalence reported in a study conducted in Muhimbili National Hospital (MNH) in Tanzania by Francis and colleagues in 2010
                <sup>
                    <xref ref-type="bibr" rid="ref-25">25</xref>
                </sup>. Also, in this study, 123 girls and 91 boys were involved. The prevalence of UTIs in girls and boys was 7.9 % and 8.4%, respectively. These results were quite different from previous studies at MNH, which are 18.8% and 15.0% for girls and boys, respectively
                <sup>
                    <xref ref-type="bibr" rid="ref-25">25</xref>
                </sup>. A study conducted in Enugu, Nigeria, found the prevalence of UTI among children under five to be 11%
                <sup>
                    <xref ref-type="bibr" rid="ref-35">35</xref>
                </sup>.</p>
            <p>Of all children recruited, 81 (37.8%) were aged between 13 to 24 months and 80 (37.3%) were constituting about two-thirds of the recruited children. The age range 13-24 months had the highest rate (6.5%) of UTI, followed by 25-36 months (4.2%). The rate significantly decreased with increasing age (p-value =0.05). None of the children in the age group 49-59 months tested positive for UTI.</p>
            <p>Even though our finding between girls and boys was insignificant, the high prevalence of UTIs in boys than in girls can be explained by the fact that most boys are not yet circumcised at this age. In another study, uncircumcised male infants less than three months of age had the highest baseline prevalence of UTI
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>. The gender of the child and the parent or guardian's employment status was not associated with UTI positivity.</p>
            <p>Similarly, nutritional status (e.g., taking additional meals other than breastfeeding) did not affect the UTI positivity. The mean body mass index for children who were UTI positive was 20.1, which was not statistically different from the negative UTI children with a body mass index of 20.2. In the study in Enugu, Nigeria, females were more likely than males to have UTI positive status
                <sup>
                    <xref ref-type="bibr" rid="ref-35">35</xref>
                </sup>. The lack of association between UTI and nutritional status was also found in another study in rural Africa
                <sup>
                    <xref ref-type="bibr" rid="ref-36">36</xref>
                </sup>. However, a large meta-analysis involving more than 3000 children indicated that the children with malnutrition were more likely to suffer from UTI than the healthy controls
                <sup>
                    <xref ref-type="bibr" rid="ref-37">37</xref>
                </sup>.</p>
            <p>The most common causative agent of UTI in children attending Bagamoyo District Hospital was 
                <italic toggle="yes">E. coli</italic> (65.7%), followed by 
                <italic toggle="yes">Klebsiella spp</italic> (17.1%), 
                <italic toggle="yes">Proteus spp</italic> (11.4%), 
                <italic toggle="yes">Pseudomonas spp</italic> (2.9%) and 
                <italic toggle="yes">Staphylococcus spp</italic> (2.9%). Similar results were reported by Aiyegoro 
                <italic toggle="yes">et al.,</italic> who reported 
                <italic toggle="yes">Escherichia coli  (</italic>57.8%) in Nigeria
                <sup>
                    <xref ref-type="bibr" rid="ref-38">38</xref>
                </sup>. Similar results were also reported by Bahati 
                <italic toggle="yes">et al</italic>., who reported that 70% of isolates were 
                <italic toggle="yes">Escherichia coli</italic> conducted at Bugando Medical Center in Mwanza, Tanzania
                <sup>
                    <xref ref-type="bibr" rid="ref-30">30</xref>
                </sup>. In Turkey, similar results were obtained
                <sup>
                    <xref ref-type="bibr" rid="ref-39">39</xref>
                </sup>, where 
                <italic toggle="yes">E. coli</italic> was the most prevalent uropathogen with an isolation rate of 64.2%. In Enugu, Nigeria, the organisms isolated from the 22 positive urine cultures were  
                <italic toggle="yes">E. coli</italic> 31.8%, 
                <italic toggle="yes">Staphylococcus aureus</italic> 22.7%, 
                <italic toggle="yes">Klebsiella</italic> species 13.6%, 
                <italic toggle="yes">Proteus</italic> species 4.55% and 
                <italic toggle="yes">Pseudomonas</italic> species 4.55%
                <sup>
                    <xref ref-type="bibr" rid="ref-35">35</xref>
                </sup>. In another study in Nigeria, the isolation rate of 
                <italic toggle="yes">E. coli</italic> was 37%
                <sup>
                    <xref ref-type="bibr" rid="ref-40">40</xref>
                </sup>, indicating higher isolation rates of 
                <italic toggle="yes">E. coli</italic> in the current study.</p>
            <p>In this study, seven antibiotics were used to study the antibiogram of uropathogens isolated from urine samples in children under five, namely amoxicillin-clavulanate, ceftriaxone, ampicillin, erythromycin, nalidixic acid, trimethoprim-sulfamethoxazole and nitrofurantoin. The overall percentage of isolates' resistance was high for ampicillin 93.4%, erythromycin 93.4%, trimethoprim-sulfamethoxazole 91.4%. The resistance was relatively less in nalidixic acid 40%, amoxicillin-clavulanate 34.3%, nitrofurantoin 34.3 and ceftriaxone 17.1%.  Therefore, the isolated uropathogens showed high 
                <italic toggle="yes">in-vitro</italic> resistance to ampicillin, erythromycin, and trimethoprim-sulfamethoxazole. At least 90% of five uropathogens in the 35 positive samples were resistant to these antibiotics. These resistance levels are much higher than reported in a study comprising of 17,164 urine cultures
                <sup>
                    <xref ref-type="bibr" rid="ref-41">41</xref>
                </sup>, where the antimicrobial resistance rates were: ampicillin 36.3%, amoxicillin/clavulanic acid 24.7%, cefuroxime 16.8%, co-trimoxazole 31.1%, ciprofloxacin 14.7%, fosfomycin 14.5%, nitrofurantoin 15.6% and 3rd generation cephalosporins 9&#x2013;11%
                <sup>
                    <xref ref-type="bibr" rid="ref-41">41</xref>
                </sup>.</p>
            <p>On focusing on the antibiogram of all 23 
                <italic toggle="yes">E. coli</italic> isolates in this study, the resistance rate to antibiotics was ampicillin 91.3%, erythromycin  91.3%,  trimethoprim-sulfamethoxazole,  91.3%,  nalidixic acid 39.1%,  amoxicillin-clavulanate 34.8%, nitrofurantoin 30.4% and ceftriaxone 17.4%. These findings were comparable to the findings reported by Bahati 
                <italic toggle="yes">et al</italic>., conducted in Mwanza Tanzania
                <sup>
                    <xref ref-type="bibr" rid="ref-30">30</xref>
                </sup>. In another study conducted in northwestern part of Tanzania, resistance rates of 
                <italic toggle="yes">E. coli</italic>  were ampicillin (98.4%), trimethoprim-sulfamethoxazole (95.3%), amoxicillin-clavulanate (87.5%), cephalexin (61%), cefaclor (43.8%), gentamicin (21.9%), ceftriaxone (14%), nitrofurantoin (12.5%), ciprofloxacin (11.6%), ceftazidime (11%) and cefepime (3.1%)
                <sup>
                    <xref ref-type="bibr" rid="ref-42">42</xref>
                </sup>. The antibiogram of 
                <italic toggle="yes">E. coli</italic> was similar to that observed in a study in Turkey
                <sup>
                    <xref ref-type="bibr" rid="ref-39">39</xref>
                </sup>.</p>
        </sec>
        <sec sec-type="conslusions">
            <title>Conclusion</title>
            <p>The prevalence of UTIs for children under the age of five in this study was 16.4%. 
                <italic toggle="yes">Escherichia coli</italic> was the most common bacteria in UTIs, followed by 
                <italic toggle="yes">Klebsiella spp</italic>. There was high 
                <italic toggle="yes">in-vitro</italic> antibacterial resistance to ampicillin, trimethoprim-sulfamethoxazole and erythromycin with 
                <italic toggle="yes">Proteus, Pseudomonas</italic> and 
                <italic toggle="yes">Klebsiella</italic> species
                <italic toggle="yes"/> highly resistant to these three antibiotics.  There was no association found between malnutrition status and the UTI.</p>
            <p>These findings imply that children under five attending health facilities should be evaluated for UTI. Due to high resistance patterns of erythromycin, ampicillin and trimethoprim-sulfamethoxazole, these agents' routine use for treating UTIs in children under five should be evaluated at the health care facility. These agents need to be used following susceptibility testing results. Therefore, continuous surveillance for antimicrobial stewardship and surveillance is required to curb the increasing resistance patterns of uropathogens to manage UTI and other infections successfully.</p>
            <sec>
                <title>Limitation of the study</title>
                <p>One limitation of the study is the study's cross-sectional nature, whose findings may not extrapolate to other regions in Tanzania and abroad. Nevertheless, the study sheds light on the prevalence of urinary infections, the bacteria commonly isolated, and these isolates' antibiotic sensitivity.</p>
            </sec>
        </sec>
        <sec>
            <title>Data availability</title>
            <sec>
                <title>Underlying data</title>
                <p>Mendeley Data: Dataset for a cross-sectional study on the prevalence of urinary tract infections and antibiogram of uropathogens isolated from under-five children attending Bagamoyo district hospital in Tanzania - dataset. 
                    <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.17632/ktzzsfvt79.3">http://dx.doi.org/10.17632/ktzzsfvt79.3</ext-link>
                    <sup>
                        <xref ref-type="bibr" rid="ref-28">28</xref>
                    </sup>.</p>
                <p>This project contains the following underlying data:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>-</label>
                        <p>Data_uti_bagamoyo_2017_ver2.xlsx (data from questionnaire and laboratory analyses).</p>
                    </list-item>
                </list>
            </sec>
            <sec>
                <title>Extended data</title>
                <p>Mendeley Data: Dataset for a cross-sectional study on the prevalence of urinary tract infections and antibiogram of uropathogens isolated from under-five children attending Bagamoyo district hospital in Tanzania - dataset. 
                    <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.17632/ktzzsfvt79.3">http://dx.doi.org/10.17632/ktzzsfvt79.3</ext-link>
                    <sup>
                        <xref ref-type="bibr" rid="ref-28">28</xref>
                    </sup>.</p>
                <p>This project contains the following extended data:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>-</label>
                        <p>Questionnaire to the child parent or guardian.docx (semi-structured questionnaire).</p>
                    </list-item>
                </list>
                <p>Data are available under the terms of the 
                    <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International license</ext-link> (CC-BY 4.0).</p>
            </sec>
        </sec>
    </body>
    <back>
        <ref-list>
            <ref id="ref-1">
                <label>1</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Zelikovic</surname>
                            <given-names>I</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Adelman</surname>
                            <given-names>RD</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Nancarrow</surname>
                            <given-names>PA</given-names>
                        </name>
</person-group>:
                    <article-title>Urinary Tract Infections in Children. An Update.</article-title>
                    <source>

                        <italic toggle="yes">West J Med.</italic>
</source>
                    <year>1992</year>;<volume>157</volume>(<issue>5</issue>):<fpage>554</fpage>&#x2013;<lpage>561</lpage>.
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                    <pub-id pub-id-type="pmcid">1022035</pub-id>
                </mixed-citation>
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    <sub-article article-type="reviewer-report" id="report119583">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.55957.r119583</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Manilal</surname>
                        <given-names>Aseer</given-names>
                    </name>
                    <xref ref-type="aff" rid="r119583a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-1146-8093</uri>
                </contrib>
                <aff id="r119583a1">
                    <label>1</label>Department of Medical Laboratory Sciences, College of Medicine and Health Sciences, Arba Minch University, Arba Minch, Ethiopia</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>3</day>
                <month>3</month>
                <year>2022</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Manilal A</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport119583" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.52652.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>reject</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This relates to a research manuscript entitled "Prevalence of urinary tract infections and antibiogram of uropathogens isolated from children under five attending Bagamoyo District Hospital in Tanzania: A cross-sectional study." Overall, the manuscript is not well written, and should be revised with the help of native English speakers. 
                <list list-type="bullet">
                    <list-item>
                        <p>
                            <bold>Title:</bold> It is broad, please modify the title.</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Abstract:</bold> 
                            <list list-type="bullet">
                                <list-item>
                                    <p>Background should narrate the problem existing.</p>
                                </list-item>
                                <list-item>
                                    <p>Methodology is incomplete; must include the sampling technique employed, techniques used for disc diffusion assay.</p>
                                </list-item>
                                <list-item>
                                    <p>Details of descriptive and inferential statistics, Statistical software used. Compress the biochemical tests employed.</p>
                                </list-item>
                                <list-item>
                                    <p>Results; please pinpoint the most relevant results rather than incurious findings.</p>
                                </list-item>
                                <list-item>
                                    <p>Speciation of major bacteria has to be done; Please write the scientific names of bacterial pathogens in the correct form all over the manuscript and in the References section (should be italic).</p>
                                </list-item>
                                <list-item>
                                    <p>Associated factors have to be mentioned.</p>
                                </list-item>
                                <list-item>
                                    <p>Since it is a cross-sectional study, variables have to be analyzed by odds ratio and logistic regression.</p>
                                </list-item>
                                <list-item>
                                    <p>Conclusion: Has to be revised by specifying the overall findings.</p>
                                </list-item>
                            </list> </p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Introduction:</bold> 
                            <list list-type="bullet">
                                <list-item>
                                    <p>Introduction: It needs to be more informative; It is too general and shallow.</p>
                                </list-item>
                                <list-item>
                                    <p>Clearly state the problem, causes and outcomes in the African or Tanzanian context rather than USA.&#x00a0;</p>
                                </list-item>
                                <list-item>
                                    <p>Research gap existing in the study area.&#x00a0;</p>
                                </list-item>
                                <list-item>
                                    <p>Uropathogens: Give a hint about the virulence factors of uropathogens and its drug resistance and eventually the complications.&#x00a0;Factors associated with UTI in children in detail.</p>
                                </list-item>
                            </list> </p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Methodology:</bold> 
                            <list list-type="bullet">
                                <list-item>
                                    <p>Date of the study has to precisely mentioned ie., date.</p>
                                </list-item>
                                <list-item>
                                    <p>Why do the authors choose convenient sampling technique? Results couldn&#x2019;t be generalize; high possibility of under or over presentation and results would be biased.</p>
                                </list-item>
                                <list-item>
                                    <p>Inclusion criteria should be elaborated.</p>
                                </list-item>
                                <list-item>
                                    <p>Exclusion criteria is incomplete and obscure.</p>
                                </list-item>
                                <list-item>
                                    <p>Sample size calculation; why didn&#x2019;t the authors included the non-response rate.</p>
                                </list-item>
                                <list-item>
                                    <p>In this study, a total of 214 patients were evaluated in a short period. In the literature, there are well-designed studies with a larger number of cases on this subject. Why is the sample size too low?</p>
                                </list-item>
                                <list-item>
                                    <p>In addition, patients should have been evaluated with at least urinary USG or uroflowmetry.</p>
                                </list-item>
                                <list-item>
                                    <p>Sample collection parts have to be rewriten in a standard way.</p>
                                </list-item>
                                <list-item>
                                    <p>Add the company, city, and country of the used bacterial media and reagents that were used in the biochemical identification of isolates. Also, enumerate all used biochemical reactions.</p>
                                </list-item>
                                <list-item>
                                    <p>Have you checked the data quality?</p>
                                </list-item>
                            </list> </p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Antimicrobial susceptibility testing:</bold> 
                            <list list-type="bullet">
                                <list-item>
                                    <p>Add the names of the antimicrobial classes of the tested antibiotics.</p>
                                </list-item>
                                <list-item>
                                    <p>Statistical analysis must be included, odds of ratio and logistic regression.</p>
                                </list-item>
                            </list> </p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Results:</bold> 
                            <list list-type="bullet">
                                <list-item>
                                    <p>Are not well written.&#x00a0;</p>
                                </list-item>
                                <list-item>
                                    <p>Add this subtitle: Phenotypic characteristics of the recovered isolates.&#x00a0;</p>
                                </list-item>
                                <list-item>
                                    <p>The authors are advised to classify the tested isolates to MDR , XDR, and PDR as described by Magiorakos
                                        <italic> et al.</italic>
                                    </p>
                                </list-item>
                            </list> </p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Discussion</bold> 
                            <list list-type="bullet">
                                <list-item>
                                    <p>Need substantial improvement.</p>
                                </list-item>
                                <list-item>
                                    <p>Please improve the main conclusion of the manuscript.</p>
                                </list-item>
                            </list> </p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>No</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>No</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Medical Microbiology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to state that I do not consider it to be of an acceptable scientific standard, for reasons outlined above.</p>
        </body>
    </sub-article>
</article>
