<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.54661.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Marine plant mediated green synthesis of silver nanoparticles using mangrove 
                    <italic>Rhizophora </italic>
                    <italic>stylosa</italic>: Effect of variable process and their antibacterial activity</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Willian</surname>
                        <given-names>Nancy</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Syukri</surname>
                        <given-names>Syukri</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Zulhadjri</surname>
                        <given-names>Zulhadjri</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Arief</surname>
                        <given-names>Syukri</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Chemistry, Faculty of Mathematics and Natural Sciences, Andalas University, Kampus Limau Manis, Padang, West Sumatra, 25163, Indonesia</aff>
                <aff id="a2">
                    <label>2</label>Department of Teaching and Education, Raja Ali Haji Maritime University, Tanjungpinang, Riau Archipelago, 29115, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:syukriariefunand@gmail.com">syukriariefunand@gmail.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>6</day>
                <month>8</month>
                <year>2021</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2021</year>
            </pub-date>
            <volume>10</volume>
            <elocation-id>768</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>2</day>
                    <month>8</month>
                    <year>2021</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2021 Willian N et al.</copyright-statement>
                <copyright-year>2021</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
                <license>
                    <license-p>The author(s) is/are employees of the US Government and therefore domestic copyright protection in USA does not apply to this work. The work may be protected under the copyright laws of other jurisdictions when used in those jurisdictions.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/10-768/pdf"/>
            <abstract>
                <p>

                    <bold>Background: </bold>Most natural plants used in the synthesis of silver nanoparticles are limited to marine plants. To carry out applications, colloidal silver nanoparticles (AgNps) should have appropriate properties such as homogeneous shapes, small and narrow particle size distribution, and long time stability. This study aims to determine the effects of a variable process of AgNps mediated mangrove 
                    <italic toggle="yes">Rhizophora stylosa</italic> (RS) leaf extract, and antibacterial activity. </p>
                <p>

                    <bold>Methods</bold>: Synthesis of AgNps was carried out by stirring silver nitrate solution with aqueous extract. The characterization of AgNps was carried out using UV-Vis spectrophotometry, X-ray diffraction (XRD), Dynamic Light Scattering (DLS) zetasizer and Transmission Electron Microscopy (TEM). Evaluation of antibacterial activity was carried out on 
                    <italic toggle="yes">E</italic>

                    <italic toggle="yes">scherichia coli</italic> and 
                    <italic toggle="yes">Staphylococcus aureus. </italic>

                    <italic toggle="yes">
</italic>Reaction conditions such as the concentration of metal ions (0.001 M, 0.005 M, and 0.01 M), extracts (1%, 3%, and 5% v/v), and the reaction time on the size and stability of nanoparticles were also explored.</p>
                <p>

                    <bold>Results</bold>: The UV-Vis spectroscopy showed an absorption of colloidal AgNps in a wavelength range of 403&#x2013;443 nm. TEM analysis showed that as-synthesized AgNps were spherical in shape with a size range of 5&#x2013;87 nm. The use of 0.001 M and 0.005 M of Ag
                    <sup>+</sup> resulted in a smaller diameter than the synthesized AgNps, using 0.01 M Ag
                    <sup>+</sup>, in the same extract concentration. The range of zeta potential was -24.9 mV to -27.7 mV. The as-synthesized AgNps were stable for more than one month. The XRD analysis showed four peaks, which were attributed to the face centered cubic crystal structure of metallic silver. The results of the silver nanoparticles synthesis showed good activity on 
                    <italic toggle="yes">E</italic>

                    <italic toggle="yes">scherichia coli</italic> and 
                    <italic toggle="yes">Staphylococcus aureus</italic>, with an inhibition zone between 4.1&#x2013;7.2 mm.</p>
                <p>

                    <bold>Conclusions:</bold> The AgNps synthesized with RS leaf extract, which is a reducing agent, showed good potential as an antibacterial component.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>green synthesis</kwd>
                <kwd>Rhizophora stylosa</kwd>
                <kwd>silver nanoparticles</kwd>
                <kwd>antibacterial activity</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1">
                    <funding-source>Lembaga Pengelola Dana Penelitian (LPDP) of Ministry of Finance Indonesia</funding-source>
                    <award-id>201710210211848</award-id>
                </award-group>
                <funding-statement>This research work was supported by the Ministry of Finance Indonesia. The Directorate General of Higher Education, Ministry of Research, Technology and Higher Education,  Lembaga Pengelola Dana Penelitian (LPDP) of the Ministry of Finance Indonesia under Grant No. 201710210211848. The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.</funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>Nanotechnology has become a new breakthrough in research, as it finds wide application, especially in biomedical fields.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> One of the most studied materials is silver nanoparticles, which have various methods of synthesis from physics, chemistry, and biology techniques. However, most processes have many disadvantages, especially chemical methods, which require the use of hazardous reagents that are not friendly to the environment. Furthermore, an alternative arises in the synthesis of nanoparticles with a biological approach by utilizing phytochemical compounds contained in plants.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> In general, these phytochemical compounds contain hydroxyl groups, which play a crucial role in the formation of silver nanoparticles through the reduction of Ag
                <sup>+</sup> to Ag
                <sup>0</sup>.</p>
            <p>The green synthesis of nanoparticles relies on the stability of silver nanoparticles of substances that are non-toxic, as well as solvents and reducing agents. The effectiveness of this product is based on the size and shape of the particles.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> To carry out applications, colloidal silver nanoparticles (AgNps) should have appropriate physical and chemical properties such as homogeneous shapes, small and narrow particle size distribution, and long-time stability. The control of nanoparticle growth from agglomeration is very important in the selection of stabilizers, donor metals, polymers, and surfactants since its potential application strongly depends on the stability. In addition, to reduce the hazardous effect on the environment, the use of natural reagents is being considered. The hydroxyl group in the natural polyphenol component acts as a reducing, as well as capping agent.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> By the double-function utilization of natural plants, the reagent used in the reaction could be diminished.</p>
            <p>Currently, most of the natural plants used in the synthesis of silver nanoparticles are limited to terrestrial plants. Only a few studies report the use of marine plants. Indonesia as an archipelago has a wealth of marine resources such as mangroves. Its extracts are known to have antimicrobial abilities that have long been used by the community.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup> One of them is 
                <italic toggle="yes">Rhizophora stylosa</italic> (RS), which is a member of the 
                <italic toggle="yes">Rhizophoraceae</italic> family in the Southeast Asian mangrove ecosystem. It is known to have several compounds that play an important role in biomedical applications. Some studies report that 
                <italic toggle="yes">Rhizophora</italic> has several biological activities such as antibacterial, antioxidant and anti-cancer.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> Teraxerol, teraxerone (triterpenoids), sitosterol (steroids), protocatechuic acid and isovanillic acid (phenolic compounds), routine, astilbin, catechin (flavonoids) are the main compounds in RS mangrove plants. Those compounds show extraordinary pharmacological activities and are linked with the presence of &#x2013;OH.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>,
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> In this study, RS leaf extract was used as a reducing agent in the production of RS-AgNps as well as a stabilizer.</p>
            <p>To the best of our knowledge, this is the first research on RS mediated synthesis of silver nanoparticles. This study aims to investigate the effects of reaction conditions, such as reaction time, the amount of silver solution, and amount of extract, on the properties of fabricated silver nanoparticles. The antibacterial activity of as-synthesized RS AgNps was evaluated against 
                <italic toggle="yes">Escherichia coli</italic> and 
                <italic toggle="yes">Staphylococcus aureus</italic>, which are the main microbes present in wounds.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>Methods</title>
            <sec id="sec3">
                <title>Preparation of 
                    <italic toggle="yes">Rhizophora stylosa</italic> leaf extract</title>
                <p>Fresh leaves of RS were collected from mangrove forest on Bintan Island, Riau Archipelago Indonesia. They were washed with double distilled water (DDW) to remove dust and other impurities. Clean leaves were shade-dried for 10&#x2013;15 days and then ground to obtain leaf powder. The extraction of RS leaves was done by adding 20 grams of leaf powder into 100 ml of DDW (1:5) followed by heating at 65
                    <sup>o</sup>C for 30 minutes with a hotplate stirrer. This mixture was then filtered using Whatman filter paper no. 1. The obtained extract was stored at 4&#x00b0;C for further experiments.</p>
            </sec>
            <sec id="sec4">
                <title>Synthesis of colloidal silver nanoparticle</title>
                <p>Synthesis of silver nanoparticles was carried out by stirring silver nitrate solution with RS leaf extract in a total volume of 50 mL at a constant speed of 500 rpm. The concentration of AgNO
                    <sub>3</sub> was varied to be 0.001 M, 0.005 M, and 0.01 M, while RS leaf extract was 1%, 3%, and 5% (v/v). The absorbance of the sample was periodically monitored after one, two, four, and six hours of stirring using UV-Vis spectroscopy. Therefore, all samples were stored in a sealed bottle to measure the absorbance after 24, 72, 168, and 720 hours. In this study, some synthesis variables, such as reaction time, extract, and silver precursor concentration were applied to determine the optimum conditions for fabricating stable colloidal silver nanoparticles.</p>
            </sec>
            <sec id="sec5">
                <title>The characterization</title>
                <p>The diameter and zeta potential of RS-AgNps were characterized using Dynamic Light Scattering (DLS) Zetasizer HORIBA (SZ-100) at 25 &#x00b0;C. Absorbance intensity and surface plasmon resonance (SPR) uptake were analyzed using UV-Vis spectroscopy (Shimadzu UV-1800 spectrophotometer) in wavelength range of 200-800 nm at 5 nm intervals. The device was fully controlled by the 
                    <ext-link ext-link-type="uri" xlink:href="https://www.ssi.shimadzu.com/products/uv-vis-spectrophotometers/uv-probe-software.html">UV Probe version 2.42</ext-link> software monitor package. The shape and particle size distribution of silver nanoparticles were calculated on the basis of TEM images (JEOL JEM 1400) processed using 
                    <ext-link ext-link-type="uri" xlink:href="https://imagej.nih.gov/ij/download.html">J</ext-link> software. X-ray diffraction (Shimadzu XRD-7000s, &#x03bb; 1.5406 &#x00c5; operated at a voltage of 30kV and current of 30mA) were used to investigate crystal structures of the samples.</p>
            </sec>
            <sec id="sec6">
                <title>Antibacterial activity</title>
                <p>Antibacterial activity of the as-synthesized RS-AgNps was tested against 
                    <italic toggle="yes">Escherichia coli</italic> (Gram negative bacteria) and 
                    <italic toggle="yes">Staphylococcus aureus</italic> (Gram positive bacteria) using the agar diffusion method. Firstly, the bacteria were planted in nutrient agar (NA) and then cultivated for 24 hours at 37 &#x00b0;C. The suspended bacteria were transferred into 100 mL NA media and then poured into a petri dish. Sterile cotton with a colloidal nanoparticle sample with a concentration of 100 mg/mL were deposited in the well. DDW and amoxicillin were adopted as negative and positive controls, respectively, and the area of inhibition was measured after 24 hours of precipitation and incubation, tests were carried out in duplicate and the results displayed were averaged.</p>
            </sec>
        </sec>
        <sec id="sec7" sec-type="result|discussion">
            <title>Results and discussion</title>
            <sec id="sec8">
                <title>UV-Vis spectroscopy analysis</title>
                <p>The formation of silver nanoparticles in the samples were specifically recognized by color changes from colorless to light yellow right after mixing the silver precursor and leaf extract (
                    <xref ref-type="table" rid="T1">Table 1</xref>). It was confirmed by UV-Vis spectrophotometry analysis where AgNps provide specific peaks at a wavelength of about 403&#x2013;443 nm. This analysis was based on the SPR phenomenon of spherical metallic nanoparticles, which is strongly influenced by shape and size.
                    <sup>
                        <xref ref-type="bibr" rid="ref13">13</xref>
                    </sup>
                </p>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>Table 1. </label>
                    <caption>
                        <title>Wavelength of 
                            <italic toggle="yes">Rhizophora stylosa</italic> silver nanoparticles (RS-AgNps).</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="10" rowspan="1" valign="top">Wavelength (nm) RS-AgNps</th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Reaction Time (h)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.001 M (1%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.001 M (3%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.001 M (5%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.005 M (1%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.005 M (3%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.005 M (5%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.01 M (1%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.01 M (3%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.01 M (5%)</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">426</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">430.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">387</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">422</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">424.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">401.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">385</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">433</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">419</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">405</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">403.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">439</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">408.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">384</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">437.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">433</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">422.5</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">416.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">401</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">364</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">412</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">434.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">385</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">445.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">438</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">426</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">24</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">409</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">404.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">398</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">437.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">414.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">384</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">450</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">448</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">437.5</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">72</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">406</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">416.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">416</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">441</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">417.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">397.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">446</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">445</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">423</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">168</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">416</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">419.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">414</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">439</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">418.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">402.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">446</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">443</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">443</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">720</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">421</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">419</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">419</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">421</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">419</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">419</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">443</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">446</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">446</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>
                    <xref ref-type="fig" rid="f1">Figure 1</xref> shows the UV-Vis spectrum of as-synthesized RS-AgNps in a varied concentration of AgNO
                    <sub>3</sub> and RS leaf extract after a one-month reaction. The spectrum of silver nitrate solution (j) and RS leaf extract (k) provided peaks at wavelength 301 and 279 nm, respectively. In general, the peaks were then converted to a wavelength range of 419 to 446 nm, which were specific to spherical AgNps. The inset pictures show laser beam irradiation of the brown-colored samples based on the Tyndal effect. Those results strongly confirmed the formation of metallic silver nanoparticles through the reduction process of Ag
                    <sup>+</sup> to Ag
                    <sup>0</sup>, which consisted of three stages of process i.e. reduction, nucleation, and growth.
                    <sup>
                        <xref ref-type="bibr" rid="ref14">14</xref>
                    </sup> Similar studies on mangrove 
                    <italic toggle="yes">Rhizophora lamarckii</italic> plants have shown that spherical AgNps contribute to absorption bands of around 420 nm in the spectrum of particles.
                    <sup>
                        <xref ref-type="bibr" rid="ref15">15</xref>
                    </sup>
                </p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>Figure 1. </label>
                    <caption>
                        <title>UV-Vis absorption of synthesized 
                            <italic toggle="yes">Rhizophora stylosa</italic> silver nanoparticles (RS-AgNps), stabilization Nps after one month.</title>
                        <p>The inset shows the laser beam radiation.</p>
                    </caption>
                    <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/58166/613eff37-63f5-48b6-ad43-052570be7691_figure1.gif"/>
                </fig>
                <p>In this study, RS-AgNps samples were prepared using a varied concentration of silver nitrate (0.001 M, 0.005 M, and 0.01 M) and RS leaf extract (1%, 3%, and 5% v/v) in order to determine the optimum reaction composition. The wavelength and absorbance value based on spectrophotometry analysis are shown in 
                    <xref ref-type="table" rid="T1">Table 1</xref>. It was shown that an increase in extract concentration (1% to 5%) significantly shortened the wavelength, which indicates smaller-sized AgNps were formed. However, based on the wavelength values, AgNps with the addition of 3% leaf extract tended to have less wavelength shift than those of AgNps with 1% and 5%. This suggested that the stability and growth of AgNps were maintained by the addition of 3% extract. This result strongly confirmed that RS leaf extract acted as a capping agent to stabilize and control the growth of AgNps. This was observed in all samples prepared using three different concentrations of silver nitrate.</p>
                <p>In addition, an increase in silver nitrate concentration led to longer wavelength and showed the formation of bigger-sized AgNps. This phenomenon was related to the formation of aggregates due to the excessive amount of silver nitrate in the reaction, resulting in bigger sized AgNps.
                    <sup>
                        <xref ref-type="bibr" rid="ref16">16</xref>
                    </sup> Hence, in order to fabricate stable small-sized AgNps, it is sufficient to apply a low concentration of silver nitrate i.e. 0.001 M and 0.005 M.</p>
                <p>The leaf extract and silver ion concentration significantly affected the absorption intensity as well, as seen in 
                    <xref ref-type="table" rid="T2">Table 2</xref>. The AgNps samples prepared using 5% extract showed a higher absorption intensity than those prepared using 1% and 3%. This was observed both in the use of 0.001 M and 0.005 M silver nitrate. The absorption intensity reflects the number of metallic nanoparticles formed in the reaction. Hence, these results suggest that the more RS leaf extract used in the reaction, the greater the number of metallic nanoparticles formed. This strongly confirmed the role of leaf extract in reducing Ag
                    <sup>+</sup> to Ag
                    <sup>0</sup> and the formation of AgNps. This result is beneficial in industry because synthesis is carried out on a large scale.</p>
                <table-wrap id="T2" orientation="portrait" position="float">
                    <label>Table 2. </label>
                    <caption>
                        <title>Absorbance of 
                            <italic toggle="yes">Rhizophora stylosa</italic> silver nanoparticles (RS-AgNps).</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top"/>
                                <th align="left" colspan="9" rowspan="1" valign="top">Absorbance (a.u)</th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Reaction Time (h)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.001 M (1%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.001 M (3%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.001 M (5%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.005 M (1%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.005 M (3%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.005 M (5%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.01 M (1%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.01 M (3%)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">0.01 M (5%)</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.433</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.423</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.135</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.516</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.574</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.651</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.323</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.567</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.08</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.438</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.284</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.681</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.722</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.661</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.819</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.306</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.727</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.359</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.401</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.509</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.927</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.936</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.754</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.941</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.467</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.911</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">24</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.347</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.413</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.532</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.9669</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.923</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.846</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.971</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.535</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">2.007</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">72</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.376</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.491</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.589</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.129</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.967</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.911</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.957</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.765</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.005</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">168</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.36</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.483</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.587</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.408</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.972</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.876</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.623</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.532</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.943</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">720</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.352</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.473</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.597</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">1.458</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.962</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.776</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.723</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.432</td>
                                <td align="left" colspan="1" rowspan="1" valign="bottom">0.543</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>In addition, the samples prepared using 0.005 M silver nitrate solution exhibited higher absorption intensity than those prepared using 0.001 M. It is assumed that the higher concentration of silver nitrate solution provided more reduction and led to a higher number of formed AgNps. However, the excessive silver nitrate solution in a concentration of 0.01 M resulted in a lower absorption intensity.</p>
                <p>In general, there was no significant decrease in absorbance intensity during the reaction process up to a one-month reaction. This result suggested that the as-synthesized RS showed good stability. Furthermore, the AgNps size data and its correlation with the concentration of extract and silver solution is supported by the TEM data.</p>
            </sec>
            <sec id="sec9">
                <title>Transmission electron microscopy, dynamic light scattering, zeta potential and polydispersion index analysis</title>
                <p>
                    <xref ref-type="fig" rid="f2">Figure 2</xref> shows the TEM images of RS-AgNps, which are spherical in shape with a size range of 5&#x2013;87 nm. The mean diameter of AgNps prepared using 0.001 M, 0.005 M, and 0.01 M silver nitrate and the addition of 3% extract were 25 nm, 22 nm, and 45 nm, respectively. These results show that the concentration of silver nitrate affects the size of the nanoparticles, where the use of 0.01 M silver nitrate resulted in a larger diameter of AgNps than those prepared using a lower concentration. It was confirmed that there is a strong correlation between the mean particle diameter with absorption wavelength of AgNps. The shift to longer wavelength (red shift) in UV-Vis spectrophotometry analysis indicates a larger mean diameter.
                    <sup>
                        <xref ref-type="bibr" rid="ref17">17</xref>
                    </sup> 
                    <xref ref-type="fig" rid="f2">Figure 2a</xref> and 
                    <xref ref-type="fig" rid="f2">2b</xref> show smaller particle size.</p>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>Figure 2. </label>
                    <caption>
                        <p>Transmission electron microscope images of 
                            <italic toggle="yes">Rhizophora stylosa</italic> silver nanoparticles (RS-AgNps) and particle size distribution: (a, d) AgNps 0.001M 3% with particle size of 5 nm&#x2013;70 nm and mean diameter 25 nm, (b, e) AgNps 0.005 M 3%, with particle size of 5 nm&#x2013;77 nm and mean diameter 22 nm (c, f) AgNps 0.01 M 3%, with particle size of 23 nm&#x2013;87 nm and mean diameter 45 nm.</p>
                    </caption>
                    <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/58166/613eff37-63f5-48b6-ad43-052570be7691_figure2.gif"/>
                </fig>
                <p>In 
                    <xref ref-type="fig" rid="f2">Figure 2c</xref>, there was a slight agglomeration at 0.01 M. Particles in this study are ionic silver nanoparticles dispersed in aquades, permanent dipole and induced dipole between particles that are close together so that they undergo aggregation due to the van der Waals force.
                    <sup>
                        <xref ref-type="bibr" rid="ref18">18</xref>,
                        <xref ref-type="bibr" rid="ref19">19</xref>
                    </sup> Particle aggregation causes the size to become large. Aggregation also indicates the small repulsion force between particles, which causes colloid instability. In previous studies, leaf synthesis for nanoparticles (NP) production in mangrove 
                    <italic toggle="yes">Rhizophora mucranata</italic>,
                    <sup>
                        <xref ref-type="bibr" rid="ref20">20</xref>
                    </sup> 
                    <italic toggle="yes">Rhizophora apiculata</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref21">21</xref>
                    </sup> and 
                    <italic toggle="yes">Rhizophora lamarckii</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref17">17</xref>
                    </sup> had successive particle sizes of 60&#x2013;95, 19&#x2013;42, 12&#x2013;28 nm through reduction of silver nitrate compounds. In this study the nanoparticles produced were much smaller in size by controlling the amount of extracts and precursors.</p>
                <p>Based on the DLS analysis, the hydrodynamic particle size of colloidal RS-AgNps ranges from 98&#x2013;125 nm, which is larger than TEM measurements. This is due to the different measurement principles between TEM, and DLS. The latter method measures the hydrodynamic size of nanoparticles in aqueous suspensions including the metal core, and any biological molecule attached to the surface of the particles.
                    <sup>
                        <xref ref-type="bibr" rid="ref22">22</xref>
                    </sup> The zeta potential is an important parameter for assessing the stability of AgNps in aqueous suspensions. When the value is greater, either positive or negative, it suggests that molecules tend to repulse each other, hence it increases the suspension stability. The negative potential values shown by the bio-synthesized AgNps reflect the presence of bio-organic components in the extract as a capping agent.
                    <sup>
                        <xref ref-type="bibr" rid="ref13">13</xref>,
                        <xref ref-type="bibr" rid="ref23">23</xref>
                    </sup>
                </p>
                <p>A zeta potential value of &#x00b1; 30 mV is required for indication of a stable nanoparticle suspension.
                    <sup>
                        <xref ref-type="bibr" rid="ref24">24</xref>,
                        <xref ref-type="bibr" rid="ref25">25</xref>
                    </sup> The zeta ability of RS-AgNps colloids range from (&#x2212;24.9) mV up to (&#x2212;27.7) mV. In addition, the extract concentration in colloidal AgNps influenced the polydispersity index as well. The polydispersity index showed the dimensions of the particle size distribution, while a polydispersity index value &gt; 0.7 indicates a very wide dispersion.
                    <sup>
                        <xref ref-type="bibr" rid="ref26">26</xref>
                    </sup> AgNps 0.001 M and 0.005 M with addition of 3% extract showed a narrow size distribution (
                    <xref ref-type="fig" rid="f2">Figure 2d</xref> and 
                    <xref ref-type="fig" rid="f2">2e</xref>). It was confirmed by a polydispersity index of 0.37. Similar research was carried out by Nasiriboroumand 
                    <italic toggle="yes">et al</italic>., who synthesized AgNps mediated by pomegranate rind.
                    <sup>
                        <xref ref-type="bibr" rid="ref4">4</xref>
                    </sup> The zeta potential was found to be &#x2212;37 mV to &#x2212;32 mV and a PDI value of 0.25. It showed a narrow particle size distribution with good stability.</p>
            </sec>
            <sec id="sec10">
                <title>X-ray diffraction analysis</title>
                <p>X-ray diffraction (XRD) analysis was carried out in order to investigate the crystallinity of as-synthesized RS-AgNps. The diffraction pattern (
                    <xref ref-type="fig" rid="f3">Figure 3</xref>) showed diffraction peaks that are well resolved at an angle of 2&#x03b8; at 38.28, 44.45, 64.53 and 77.53, which correspond to (111), (200), (220), (311) of face-centered cubic structure of metallic silver (ICSD No. 4068). These results confirmed UV-Vis spectroscopy and the TEM analysis result, which showed that AgNps have been successfully obtained by the mediation of RS leaf extract. Some other peaks (marked by asterisks*) were observed in the diffraction pattern. It is assumed that these referred to the presence of reducing, and capping agent on the surface of the AgNps and the additional diffraction peaks in the XRD pattern were due to bio-organic crystallization in the plant extract.
                    <sup>
                        <xref ref-type="bibr" rid="ref27">27</xref>
                    </sup> These results were similar to those found in AgNps synthesized through mediation of other marine plants i.e. 
                    <italic toggle="yes">Ecklonia cava</italic> algae extract.
                    <sup>
                        <xref ref-type="bibr" rid="ref5">5</xref>
                    </sup> This happened in the use of other marine plants like 
                    <italic toggle="yes">Rhizophora stylosa</italic> as well.</p>
                <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                    <label>Figure 3. </label>
                    <caption>
                        <p>X-ray diffraction of 
                            <italic toggle="yes">Rhizophora stylosa</italic> mediated silver nanoparticles. (*) bio-organic crystallization in the plant extract (Khader 
                            <italic toggle="yes">et al</italic>., 2019).</p>
                    </caption>
                    <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/58166/613eff37-63f5-48b6-ad43-052570be7691_figure3.gif"/>
                </fig>
            </sec>
            <sec id="sec11">
                <title>Antibacterial activity</title>
                <p>Silver nanoparticles with sizes &lt;100 nm have been of great concern to researchers due to their small particle size and high surface area properties.
                    <sup>
                        <xref ref-type="bibr" rid="ref28">28</xref>
                    </sup> In this study, the antimicrobial activity of RS-AgNps was tested against two types of bacteria i.e. 
                    <italic toggle="yes">Escherichia coli</italic> and 
                    <italic toggle="yes">Staphylococcus aureus</italic> as representatives of Gram negative and Gram-positive bacteria, which were commonly used to evaluate the activity of nanoparticles in previous studies.
                    <sup>
                        <xref ref-type="bibr" rid="ref29">29</xref>,
                        <xref ref-type="bibr" rid="ref30">30</xref>
                    </sup> The antibacterial testing method uses the agar diffusion method. Amoxcillin and distilled water were used as positive and negative controls, respectively. The test was run in duplicate, and all data presented were averaged.</p>
                <p>The results showed that the three variations in the AgNp concentration significantly affected the inhibition zone. As shown in 
                    <xref ref-type="table" rid="T3">Table 3</xref> and 
                    <xref ref-type="fig" rid="f4">Figure 4</xref>, the area of restriction for a concentration of 0.001 M; 0.005 M and 0.01 M RS-AgNps respectively, are 5.5 mm, 7.2 mm, and 5.1 mm for 
                    <italic toggle="yes">E. coli</italic> and 4.3 mm for 
                    <italic toggle="yes">S. aureus</italic> bacteria. A higher zone of inhibition was found in the 0.005 M concentration of AgNps against 
                    <italic toggle="yes">E. coli</italic> and 
                    <italic toggle="yes">S. aureus.</italic>
                </p>
                <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                    <label>Figure 4. </label>
                    <caption>
                        <p>Antibacterial activity of silver nanoparticles against: a) 
                            <italic toggle="yes">Escherichia coli</italic> and b) 
                            <italic toggle="yes">Staphylococcus aureus.</italic>
                        </p>
                    </caption>
                    <graphic id="gr4" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/58166/613eff37-63f5-48b6-ad43-052570be7691_figure4.gif"/>
                </fig>
                <table-wrap id="T3" orientation="portrait" position="float">
                    <label>Table 3. </label>
                    <caption>
                        <p>Diameter of inhibition zone of synthesized silver nanoparticles (RS-AgNps) against 
                            <italic toggle="yes">Escherichia coli</italic> and 
                            <italic toggle="yes">Staphylococcus aureus.</italic>
                        </p>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="2" valign="top">Samples</th>
                                <th align="left" colspan="2" rowspan="1" valign="top">Inhibition zone (mm) against bacterial strains</th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">
                                    <italic toggle="yes">E. coli</italic>
                                </th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
                                    <italic toggle="yes">S. aureus</italic>
                                </th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">AgNps 0.001 M, 3% extract</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4.3</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">AgNps 0.005 M, 3% extract</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">7.2</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4.3</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">AgNps 0.01 M, 3% extract</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5.1</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4.3</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">RS leaf extract</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">3.8</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4.1</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Amoxicillin (+)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">16</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">15</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>Generally, it was observed that as-synthesized AgNps showed a greater inhibitory zone diameter against 
                    <italic toggle="yes">E. coli.</italic> than 
                    <italic toggle="yes">S. aureus.</italic> These results suggest that RS-AgNps is more specific against Gram negative bacteria than against Gram positive bacteria. The Gram-positive bacteria have a thick layer of peptidoglycan (80 nm) in the cell wall, and this zone has covalent bonds with teichoic and teichuronic acids, whereas Gram negative bacteria have a thin peptidoglycan layer (~8 nm thick) with a lipopolysaccharide external membrane (1&#x2013;3 &#x03bc;m thick). Another possible cause for their vulnerability to nanoparticles (NP) are these bacteria are coated with lipopolysaccharides, which are negatively charged. These negative loaded molecules are closer to positive ions, which are mostly released through NP leading to ion uptake and increased intracellular damage. NP exhibit their antibacterial activity by different pathways, which are summarized as a combination of ROS production, altered gene regulation, cell wall penetration, and binding metabolites, among other processes.
                    <sup>
                        <xref ref-type="bibr" rid="ref31">31</xref>
                    </sup>
                </p>
                <p>In addition, the region of maximum inhibition of AgNps was observed based on the TEM results. As corresponding to the average diameter estimated by TEM analysis, there is a correlation between mean diameter of NP and its antibacterial activity. The resulting smaller-sized particles (22 nm) have a larger inhibitory zone, as well as stable colloidal AgNps. Choi and Hu (2008) reported that this phenomenon was due to the easiness of the small-sized NP to penetrate into the bacteria cell. In addition, smaller NP have a larger surface area, resulting in a larger interaction site of NP and bacteria.
                    <sup>
                        <xref ref-type="bibr" rid="ref32">32</xref>
                    </sup>
                </p>
                <p>According to Aromal and Philip (2012), the mechanism of antibacterial activity of metallic NP is highly dependent on the interaction or bond between NP and compounds in the bacteria cell wall. Firstly, the metallic nanoparticles penetrate into the cell and then interfere with cell metabolism, especially with the organelle involved in protein synthesis.
                    <sup>
                        <xref ref-type="bibr" rid="ref33">33</xref>
                    </sup> From this study, it can be concluded that RS-AgNps may be developed as an antimicrobial agent.</p>
                <p>Other types of mangroves have also been used as reducing agents for the synthesis of AgNps against pathogenic bacteria including 
                    <italic toggle="yes">E. coli and S. aureus</italic>, such as 
                    <italic toggle="yes">Ceriops tagal</italic>,
                    <sup>
                        <xref ref-type="bibr" rid="ref34">34</xref>
                    </sup> 
                    <italic toggle="yes">Exoecaria agallocha</italic>,
                    <sup>
                        <xref ref-type="bibr" rid="ref35">35</xref>
                    </sup> 
                    <italic toggle="yes">Sonneratia apetala</italic>,
                    <sup>
                        <xref ref-type="bibr" rid="ref32">32</xref>
                    </sup> and 
                    <italic toggle="yes">Rhizophora mucranata</italic>.
                    <sup>
                        <xref ref-type="bibr" rid="ref33">33</xref>
                    </sup>
                </p>
            </sec>
        </sec>
        <sec id="sec12" sec-type="conclusion">
            <title>Conclusion</title>
            <p>Silver nanoparticles with a particle size range of 5&#x2013;87 nm or an average of 22 nm have been successfully synthesized with a wavelength of 403&#x2013;443 nm by bioreduction using leaf extracts of the 
                <italic toggle="yes">Rhizophora stylosa</italic> mangrove plant. The results of UV-Vis spectroscopy and TEM analysis showed the formation of smaller sized nanoparticles. DLS, zeta potential and index polydispersion analysts have demonstrated the stability of nanoparticles within a month of the reaction. The influence of reaction time, silver nitrate dissolution concentration and effect of extract amount showed a joint relationship. A silver nitrate concentration of 0.001 M and 0.005 M was able to produce smaller nanoparticles and the optimal concentration of extract used was 3% (v/v). Antibacterial activity showed that silver nanoparticles mediated by RS mangroves have biomedical potential.</p>
        </sec>
        <sec id="sec13">
            <title>Data availability</title>
            <p>All data underlying the results are available as part of the article and no additional source data are required.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgements</title>
            <p>This research work was supported by Ministry of Finance Indonesia. Funding this works was supported by Pengelola Dana Penelitian (LPDP) of Ministry of Finance Indonesia under Grant No. 201710210211848.</p>
        </ack>
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    <sub-article article-type="reviewer-report" id="report122119">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.58166.r122119</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Choudhary</surname>
                        <given-names>Manoj Kumar</given-names>
                    </name>
                    <xref ref-type="aff" rid="r122119a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-5658-8814</uri>
                </contrib>
                <aff id="r122119a1">
                    <label>1</label>Nanomaterial Research Laboratory, Department of Chemistry, Guru Nanak National College, Ludhiana, India</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>18</day>
                <month>2</month>
                <year>2022</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Choudhary MK</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport122119" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.54661.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>
                <list list-type="order">
                    <list-item>
                        <p>The theory should be more explanatory and well written to improve the readability of this article.</p>
                    </list-item>
                    <list-item>
                        <p>Incorrect inter-relation between the data in the tables and the statements in the text.</p>
                    </list-item>
                    <list-item>
                        <p>Lack of consideration of reference materials as the authors of this article directly give statement rather than giving particular reference to that statement.</p>
                    </list-item>
                    <list-item>
                        <p>A statement has been given in the article &#x201c;
                            <italic>these compounds show extraordinary pharmacological activities and are linked with the presence of &#x2013;OH</italic>&#x201d; What does it referred to?</p>
                    </list-item>
                    <list-item>
                        <p>In the results and discussion part, the UV-Vis spectrum of synthesized nanoparticles is not clearly explained and hence unjustified.</p>
                    </list-item>
                    <list-item>
                        <p>In the discussion of table 1 (in results and discussion part), the relation between the size of Nps, wavelength and concentration of extract should be properly explained. Authors may follow a recent article of mine titled, &#x201c;Evaluation of the kinetic and catalytic properties of biogenically synthesized silver nanoparticles&#x201d;
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-122119-1">1</xref>
                            </sup>.</p>
                    </list-item>
                    <list-item>
                        <p>The statement made by authors &#x201c;
                            <italic>Ag Nps with addition of 3% leaf extract tend to have less wavelength shift than those of 1% and 5%</italic>&#x201d; needs more elaborated explanation with proper justification and latest reference to support it.</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Synthesis, Characterization and Environmental Applications of metal nanoparticles, carbonaceous materials and photocatalytic materials</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <back>
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