<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.123556.2</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Detection of SARS-CoV-2 in conjunctival secretion and tears in patients with COVID-19 in a tertiary care centre, South India. .</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 2; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>R. Nayak</surname>
                        <given-names>Rajesh</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Bhat</surname>
                        <given-names>Sevitha</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>R Kamath</surname>
                        <given-names>Ajay</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Chandak</surname>
                        <given-names>Anshul</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Khare</surname>
                        <given-names>Kanishk</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Opthalmology, Kasturba Medical College, Mangalore, Manipal Academy of Higher Education, Manipal, India</aff>
                <aff id="a2">
                    <label>2</label>Department of Microbiology, Kasturba Medical College, Mangalore, Manipal Academy of Higher Education, Manipal, India</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:sevitha.bhat@manipal.edu">sevitha.bhat@manipal.edu</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>5</day>
                <month>1</month>
                <year>2023</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2022</year>
            </pub-date>
            <volume>11</volume>
            <elocation-id>1059</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>4</day>
                    <month>1</month>
                    <year>2023</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 R. Nayak R et al.</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/11-1059/pdf"/>
            <abstract>
                <p>
                    <bold>Aims and objectives</bold>: Purpose of this study is to detect the presence of SAR-CoV-2 viral RNA in conjunctival secretions of COVID-19 patients and to compare the RT-PCR positivity rate for SARS-CoV-2 in conjunctival and nasopharyngeal swab.</p>
                <p>
                    <bold>Materials and method</bold>: Eighty hospitalised COVID-19 patients whose nasopharyngeal swab tested positive for SARS-CoV-2 by RT-PCR were included in the study. Conjunctival swab was collected from eyes of these patients and sent for detection of SARS-CoV-2 by RT-PCR method.</p>
                <p>
                    <bold>Results</bold>: Among the eighty patients, 51 (63.7%) were males and 29 (36.3%) were females. The mean age of the patients was 55.93 &#x00b1; 16.59. Six patients had ocular manifestations. Eleven (13.75%) patients tested positive on conjunctival swab for SARS-CoV-2 viral RNA and only one of them had ocular manifestations out of the eleven.</p>
                <p>
                    <bold>Conclusion</bold>: In our study the presence of SARS-CoV-2 in conjunctival secretions of COVID-19 patients was detected and this was not dependent on presence of ocular manifestations or duration of disease. Though the conjunctival positivity is lower compared to the nasopharyngeal swab sampling, ocular surface and secretions can be a potential route of viral transmission.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Conjunctival swab</kwd>
                <kwd>nasopharyngeal swab</kwd>
                <kwd>SARS-CoV-2</kwd>
                <kwd>COVID-19</kwd>
                <kwd>RT-PCR</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
        <notes>
            <sec sec-type="version-changes">
                <label>Revised</label>
                <title>Amendments from Version 1</title>
                <p>There is a minor change in the affiliations.</p>
            </sec>
        </notes>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>An outbreak of pneumonia of unknown cause was first reported in late December 2019 from Wuhan, China. A new variant of coronavirus temporarily called 2019 novel coronavirus (2019-nCoV) was found to be the culprit behind it.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> This non-segmented enveloped RNA virus of the 
                <italic toggle="yes">Coronaviridae</italic> family was named &#x2018;severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)&#x2019; as it resembled the virus causing the 2003 SARS outbreak, genetically, and the disease was termed as COVID-19 (Coronavirus disease).
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
            </p>
            <p>Clinically majority of patients have symptoms of fever, dry cough, and breathlessness while the less common symptoms include headache, fatigue, confusion, and diarrhoea. Though the majority of patients are asymptomatic or have mild to moderate influenza-like illness, severe cases of COVID-19 may present with a severe lung infection, acute respiratory or renal injury, septic shock, etc.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup> Ground-glass opacity was a typical finding on the chest computed tomography which was seen in the majority of the patients. Decreased lymphocytes were another commonly seen finding on blood investigation.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> Alteration in taste and smell sensations has also been reported by patients with milder symptoms.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> Eye symptoms are also reported in a few patients which included watering, redness, itching, and discharge.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
            </p>
            <p>SARS-CoV-2 led to a global health crisis causing COVID-19. Worldwide a total of 220 million individuals have been diagnosed with the presence of the virus, and approximately 4.5 million people among them have been lost to COVID-19. In India alone, approximately 33 million individuals were found positive for SARS-CoV-2, and approximately half a million individuals have died. Though, the vaccination drive is at its height still the cases of COVID-19 are on the rise. The transmission of the coronavirus appears mainly through respiratory droplets and direct contact as the major routes for infection. Transmission through the gastrointestinal route, aerosol and eye secretions, is still to be further investigated. The possibility of transmission of the virus through ocular surfaces like the conjunctiva and cornea is still unproven.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> This highly contagious disease has presented as a medical challenge in terms of diagnosing and management because of the wide spectrum of disease symptoms with which a patient presents. RT-PCR (Reverse Transcription Polymerase Chain Reaction) test to look for SARS-CoV-2 in swabs taken from the nasopharyngeal area is still the gold standard for diagnosing COVID-19 disease.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
            </p>
            <p>The ocular surface may be an inoculation site by direct touch or aerosols. From the conjunctiva, the virus may further spread to the cornea or may spread through the tears and secretions draining into the nasolacrimal duct to finally reach the nasopharynx. There have been few studies conducted worldwide demonstrating the presence of viruses in ocular secretions.</p>
            <sec id="sec42">
                <title>Objectives</title>
                <p>In our study, we aimed towards detecting SARS-CoV-2 in the conjunctival secretions and tears of COVID-19 affected individuals via reverse-transcriptase polymerase chain reaction (RT-PCR). The viral presence in the tears and ocular secretions may suggest another potential route of virus transmission. Furthermore, it will support the importance of avoiding touching of eyes and the use of protective eyewear among the doctors and even the general population at large.</p>
            </sec>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>Methods</title>
            <p>Study design and setting: It was a prospective cross-sectional study conducted in a tertiary care set up with COVID-19 care in the southern state of India between June 2021 and July 2021.</p>
            <p>The study commenced with Institutional level ethical clearance from the Institutional Ethics Committee, Kasturba Medical College, Mangalore with the approval number IEC KMC MLR06-2021/191.</p>
            <sec id="sec32">
                <title>Study participants</title>
                <p>Patients admitted with a positive nasopharyngeal swab for SARS-CoV-2 within a duration of 1 week, and age of more than 18 years. Patients with Covid-19 like symptoms but whose RT-PCR was negative for Covid-19 were excluded. Critically ill patients who couldn&#x2019;t give consent were also excluded.</p>
            </sec>
            <sec id="sec30">
                <title>Variables and data source</title>
                <p>Patients presenting complaints were noted along with any ocular complaints. The patient&#x2019;s co-morbidities were recorded and clinical parameters on presentation like body temperature and oxygen saturation (SpO2) were also taken from the patient&#x2019;s medical record. Day of nasopharyngeal swab collection was recorded and days between the nasopharyngeal swab collection and conjunctival swab collection was calculated for every patient. Written informed consent was obtained from patients before sample collection.</p>
            </sec>
            <sec id="sec3">
                <title>Sample collection</title>
                <p>A bedside ophthalmologist examination was done and the patient&#x2019;s eyelids, adnexa, conjunctiva, and cornea were examined before collection of samples. The sample was collected under aseptic conditions by the same ophthalmologist who was donned in personal protective equipment. Samples were collected by using nylon flocked swabs by sweeping movement over the inferior fornix from the medial to the lateral direction. Sample from both eyes was collected for each patient using separate swab sticks without the use of any topical anaesthetic drops. Both swab sticks were then dipped into a single viral transport medium and transferred to the institutional microbiology lab, maintaining a proper cold chain at all times. The RTPCR was performed on the samples using the kit protocol and the results were recorded.</p>
            </sec>
            <sec id="sec4">
                <title>Statistical analysis</title>
                <p>All the data was entered into an excel sheet and analyzed using IBM SPSS version 25. The continuous and categorical variables have been represented as mean &#x00b1; standard deviation and frequency percentages respectively. The association between conjunctival swab positivity and variables like the severity of COVID, presence of symptoms such as fever, breathlessness, cough, fatigue, myalgia, diarrhoea, and ocular symptoms were analyzed using the chi-square test. Correlation between the duration of days after which conjunctival swab is tested positive from the day of nasopharyngeal swab positivity, and oxygen saturation was done using Pearson&#x2019;s correlation and p&lt;0.05 was considered significant.</p>
            </sec>
        </sec>
        <sec id="sec5" sec-type="results">
            <title>Results</title>
            <p>A total of 80 patients who were tested positive for SARS-CoV-2 on nasopharyngeal swabs were included in our study. Among them 51(63.7%) were males and 29(36.3%) were females. The mean age of the patients was 55.93 years with a standard deviation of 16.59 years. The average time interval between conjunctival swab collection and nasopharyngeal swab collections was similar in overall patients when compared to patients with conjunctival swab positivity with an average interval of 3.96&#x00b1;2.25 days and 3.45&#x00b1;2.73 days respectively. The mean of baseline parameters (like body temperature, respiratory rate, and oxygen saturation) of patients with conjunctival swab positivity was also similar to that of overall study patients (
                <xref ref-type="table" rid="T1">Table 1</xref>).</p>
            <table-wrap id="T1" orientation="portrait" position="float">
                <label>Table 1. </label>
                <caption>
                    <title>Descriptive statistics for continuous variables for the whole sample and conjunctival swab positive patients.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="2" valign="top">Variable</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">Study sample (n=80)</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">conjunctival swab positive patients (n=11)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Mean</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Std deviation</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Mean</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Std deviation</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Age</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">55.93</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">16.59</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">56.36</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18.41</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Duration from Nasopharyngeal swab</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3.96</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2.25</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3.45</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2.73</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Duration of hospital stay till conjunctival swab</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4.23</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2.27</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3.09</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2.07</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Temp</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">98.42</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">1.12</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">97.90</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">.70</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">RR</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">19.20</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3.55</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18.18</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3.15</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">SpO
                                <sub>2</sub>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">95.09</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4.41</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">94.09</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4.08</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>The presence of COVID-19 related symptoms did not show any variation in distribution among conjunctival swab-positive patients as compared to the whole study sample. Fever was the most common symptom among these patients seen in 70% of patients followed by cough (60%), breathlessness (52.5%), fatigue (36.3%), myalgia (18.8%), diarrhoea (8.8%), and ocular symptoms (7.5%) (
                <xref ref-type="table" rid="T2">Table 2</xref>). The association between Conjunctival swab positivity and the severity of COVID-19 infection is shown in 
                <xref ref-type="table" rid="T3">Table 3</xref>.</p>
            <table-wrap id="T2" orientation="portrait" position="float">
                <label>Table 2. </label>
                <caption>
                    <title>Descriptive statistics for categorical variables for the whole sample and conjunctival swab positive patients.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="2" valign="top">Variable</th>
                            <th align="left" colspan="1" rowspan="2" valign="top">Categories</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">Study sample (n=80)</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">conjunctival swab positive patients (n=11)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Frequency</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Percent</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Frequency</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Percent</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Sex</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Male</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">51</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Female</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">29</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Conjunctival swab positivity</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Negative</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">69</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">86.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Positive</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">13.8</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">100</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Category</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Mild</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">40</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">50.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">45.5</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Moderate</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">27</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">33.8</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Severe</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">13</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">16.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18.2</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Fever</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">24</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">30.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">56</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">70.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Breathlessness</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">38</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">47.5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">45.5</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">42</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">52.5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">6</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">54.5</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Cough</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">32</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">40.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">48</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">60.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Fatigue</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">51</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">29</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Myalgia</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">78.8</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">15</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18.8</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Diarrhoea</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">73</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">91.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">100.0</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">8.8</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Ocular symptoms</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">74</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">92.5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">10</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">90.9</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">6</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7.5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">9.1</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>DM</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">42</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">52.5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">38</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">47.5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>HTN</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">48</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">60.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">32</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">40.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>COPD</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">69</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">86.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">10</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">90.9</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">9</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>IHD</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">72</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">90.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">9</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">81.8</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">6.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Xray or CT findings</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">60</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">75.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.6</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">20</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">25.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <table-wrap id="T3" orientation="portrait" position="float">
                <label>Table 3. </label>
                <caption>
                    <title>Conjunctival swab positivity * Category.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="2" valign="top">Conjunctival swab positivity</th>
                            <th align="left" colspan="1" rowspan="2" valign="top">Count/%</th>
                            <th align="left" colspan="3" rowspan="1" valign="top">Category</th>
                            <th align="left" colspan="1" rowspan="2" valign="top">Chi square (p value)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Mild</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Moderate</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Severe</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Count</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">35</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">23</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11</td>
                            <td align="left" colspan="1" rowspan="4" valign="top">.108 (0.94)</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">50.7%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">33.3%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">15.9%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Count</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">45.5%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.4%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18.2%</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Inference: Conjunctival swab positivity was not associated with severity of COVID.</p>
                </table-wrap-foot>
            </table-wrap>
            <p>A total of 11 patients showed conjunctival swab positivity for SARS-CoV-2 by RT-PCR test. Among them, only one patient had ocular symptoms as compared to five patients complaining of ocular symptoms in whom conjunctival swab showed a negative result for the presence of the concerned virus. There was no correlation found between conjunctival swab positivity and the presence of ocular symptoms by using the chi-square test (
                <xref ref-type="table" rid="T4">Table 4</xref>).</p>
            <table-wrap id="T4" orientation="portrait" position="float">
                <label>Table 4. </label>
                <caption>
                    <title>Conjunctival swab positivity * Ocular symptoms.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="2" valign="top">Conjunctival swab positivity</th>
                            <th align="left" colspan="1" rowspan="2" valign="top">Count/%</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">Ocular symptoms</th>
                            <th align="left" colspan="1" rowspan="2" valign="top">Chi square (p value)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Absent</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Present</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Count</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">64</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                            <td align="left" colspan="1" rowspan="4" valign="top">0.04 (.82)</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">92.8%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">7.2%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Count</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">10</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">1</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">90.9%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">9.1%</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Inference: Conjunctival swab positivity was not associated with the presentation of ocular symptoms.</p>
                </table-wrap-foot>
            </table-wrap>
            <p>Conjunctival swab positivity was not correlated to the time interval between conjunctival swab collection from that of nasopharyngeal swab collection as shown by Spearman's correlation. This shows conjunctival swab positivity is not affected by disease duration among COVID-19 patients (
                <xref ref-type="table" rid="T5">Table 5</xref>).</p>
            <table-wrap id="T5" orientation="portrait" position="float">
                <label>Table 5. </label>
                <caption>
                    <title>Correlation between conjunctival positivity and duration from nasal swab.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Conjunctival positivity</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Mean duration from nasal swab</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Std deviation</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Spearmans correlation coefficient (rho)</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">P value</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Absent</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4.04</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2.179</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">-.091</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">.422</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Present</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3.45</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2.734</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Inference: Conjunctival swab positivity was not related to duration from nasal swab.</p>
                </table-wrap-foot>
            </table-wrap>
        </sec>
        <sec id="sec6" sec-type="discussion">
            <title>Discussion</title>
            <p>One of the earliest studies conducted in China by Zang 
                <italic toggle="yes">et al</italic> demonstrated SARS-CoV-2 on the ocular surface of 102 patients, among which only two patients tested positive for the RNA virus. Ping Wu 
                <italic toggle="yes">et al</italic> also conducted a similar study and found two (5.2%) out of 28 patients who were positive for the virus on nasopharyngeal swabs. Similar studies were also performed worldwide to investigate ocular surface and secretions as the probable transmission source of SARS-CoV-2. K Kumar 
                <italic toggle="yes">et al</italic> were among the first to study the conjunctival presence of SARS-CoV2 in the Indian population and found one (2.23%) conjunctival swab positive out of 45 samples studied.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
            </p>
            <p>In our study, out of 80 nasopharyngeal swab-positive patients, 11(13.75%) patients have detected the concerned virus in their conjunctival secretions also. Our study showed a higher conjunctival swab positivity rate as compared to a few of the previously conducted studies.</p>
            <p>Similar results were found by H Kaya 
                <italic toggle="yes">et al</italic>, where they studied the prevalence of the virus among 32 COVID-19 patients with a positivity rate of 16% (five out of 32) was found. None of them showed conjunctivitis. Interestingly, at the time of conjunctival swab collection, a repeat nasopharyngeal swab was also sent. Out of five conjunctival swab-positive patients, two were tested negative on the nasopharyngeal swab test.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> This may indicate the possibility of viral transmission through ocular surface and secretions, even after nasopharyngeal swab results are negative.</p>
            <p>In another study conducted among the Indian population from the Northern parts, found a higher prevalence of conjunctival positivity of 24% (18 patients) in a study population of 75 patients with moderate to severe COVID-19 disease without any ocular symptoms.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> 
                <ext-link ext-link-type="uri" xlink:href="https://jamanetwork.com/searchresults?author=Claudio+Azzolini&amp;q=Claudio+Azzolini">Claudio Azzolini</ext-link> 
                <italic toggle="yes">et al,</italic> also concluded a higher prevalence in a cohort of 91 patients, with 52 patients (57.1%) having conjunctival swab positivity for SARS-CoV-2.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
            </p>
            <p>The patients included in our study had a mean age of 55.93 years which was comparable to the conjunctival swab positive group of patients, 56.36 years. The systemic symptoms in the majority of patients were fever (70%), cough (60%), and breathlessness (52.5%). The mean SpO
                <sub>2</sub> of the patients in the conjunctival swab positive group was slightly lower (94%) as compared to the patients who were negative for the same (95%).</p>
            <p>Various studies have been conducted to compare the ocular manifestations, mainly conjunctivitis, and compare it with the positivity rate of detection of the virus in their conjunctival secretions. 
                <ext-link ext-link-type="uri" xlink:href="https://onlinelibrary.wiley.com/action/doSearch?ContribAuthorRaw=G%C3%BCemes-Villahoz%2C+Noemi">Noemi G&#x00fc;emes-Villahoz</ext-link> 
                <italic toggle="yes">et al</italic>, in Spain, studied 36 COVID-19 patients, with 18 patients each in conjunctivitis and non-conjunctivitis group, and found a similar prevalence of 5.5% (one patient) of conjunctival positivity in each group.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup>
            </p>
            <p>
                <ext-link ext-link-type="uri" xlink:href="https://orcid.org/0000-0002-9601-8154">Mahmoud H</ext-link> 
                <italic toggle="yes">et al</italic> also studied 28 covid patients and found a higher conjunctival positivity prevalence rate of 28.57% (eight out of 28). Among ten patients with ocular symptoms, three tested positive on conjunctival swab while in the remaining 18 patients without ocular manifestations, five tested positive on the conjunctival swab for SARS-CoV-2.
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> Therefore, the authors suggested the presence of the COVID-19 virus on the ocular surface or secretions is not affected by the presence of conjunctivitis.</p>
            <p>In our study, a total of six patients had ocular manifestations. The main symptoms were redness and watery discharge. SARS-CoV-2 was detected in the conjunctival secretions in one patient with conjunctivitis. Other five patients who had ocular symptoms tested negative for the RNA virus on conjunctival swab sampling. Ten patients among the conjunctival positive group did not have any ocular manifestations.</p>
            <p>
                <ext-link ext-link-type="uri" xlink:href="https://pubmed.ncbi.nlm.nih.gov/?sort=pubdate&amp;term=Kaur+P&amp;cauthor_id=34304212">Prempal Kaur</ext-link> 
                <italic toggle="yes">et al</italic> in a study conducted in northern India demonstrated RNA virus in conjunctival secretions of COVID 19 patients with or without ocular manifestations. The study included 60 COVID-19 patients each in two groups- one with ocular symptoms and the other without ocular symptoms (control). A similar positivity rate was found in both cases (18.33%) and control (16.66%) groups.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup>
            </p>
            <p>In our study, we also evaluated the effect of duration between the nasopharyngeal swab to the conjunctival swab collection on the viral persistence in conjunctival secretions. The mean duration in our total sample of 80 patients was 3.96 days with a standard deviation of 2.25 days, while in the conjunctival swab positive patients it was 3.45 days (2.73&#x00b1;), with minimum and maximum duration being one and seven days respectively. This shows that detection of virus in conjunctival secretions may vary, and is not dependent on the duration. Thus, the chance of transmission of the RNA virus through the ocular surface is possible even after seven days of presentation, when most of the systemic symptoms of COVID-19 subside.</p>
            <p>To study the ocular route of transmission of the virus, Wei Deng 
                <italic toggle="yes">et al</italic> conducted an animal study on rhesus monkeys and found SARS-CoV-2 inoculation on the ocular surface can cause mild Covid-19 in these monkeys suggesting transmission of the virus through the ocular route is a possibility.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup>
            </p>
            <p>The importance of protective eyewear can hence be ascertained and should be strictly practiced by doctors especially the ophthalmologist.</p>
            <p>Our study had the limitation of a small sample size. A multi-centric and a larger cohort may be needed to further validate the ocular route of transmission of the virus. Another limitation was that the conjunctival swab was collected only once. Our study showed that the virus was detected from the conjunctival secretions as early as day one to as late as day seven from nasopharyngeal swab positivity. Therefore, results may vary with multiple sampling done over a period of time.</p>
            <p>In conclusion, our study demonstrated SARS-CoV-2 in conjunctival secretions of COVID-19 patients and is not dependent on the presence of ocular manifestations or duration of disease. Though the conjunctival positivity is lower compared to the nasopharyngeal swab sampling, ocular surface and secretions can be a potential route of viral transmission.</p>
        </sec>
        <sec id="sec9">
            <title>Author contributions</title>
            <p>
                <list list-type="order">
                    <list-item>
                        <label>1.</label>
                        <p>Dr Rajesh Nayak: Conceptualization, Data Curation, Formal Analysis, Funding Acquisition, Investigation,Methodology, Project Administration, Resources, Software Supervision, Validation, Visualization, Writing &#x2013; Review &amp; Editing</p>
                    </list-item>
                    <list-item>
                        <label>2.</label>
                        <p>Dr Sevitha Bhat - Data Curation, Formal Analysis, Investigation, Methodology, Project Administration, Supervision, Validation, Visualization, Writing &#x2013; Review &amp; Editing</p>
                    </list-item>
                    <list-item>
                        <label>3.</label>
                        <p>Dr Ajay R Kamath: Conceptualization, Funding Acquisition, Project Administration, Resources, Supervision, Validation, Visualization, Writing &#x2013; Review &amp; Editing</p>
                    </list-item>
                    <list-item>
                        <label>4.</label>
                        <p>Dr Anshul Chandak: Data Curation, Formal Analysis, Investigation, Methodology, Software, Validation, Visualization, Writing &#x2013; Original Draft Preparation</p>
                    </list-item>
                    <list-item>
                        <label>5.</label>
                        <p>Dr Kanishk Khare: Data Curation, Formal Analysis, Investigation, Methodology, Software, Validation, Visualization, Writing &#x2013; Original Draft Preparation</p>
                    </list-item>
                </list>
            </p>
        </sec>
    </body>
    <back>
        <sec id="sec8" sec-type="data-availability">
            <title>Data availability</title>
            <p>

                <bold>Dryad.</bold> Detection of SARS-CoV-2 in conjunctival secretion and tears in patients with COVID-19 in a tertiary care centre, South India. DOI: 
                <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.5061/dryad.rn8pk0pdp">https://doi.org/10.5061/dryad.rn8pk0pdp</ext-link>

                <sup>

                    <xref ref-type="bibr" rid="ref20">20</xref>
</sup>
            </p>
        </sec>
        <ack>
            <title>Acknowledgments</title>
            <p>The authors are grateful to Manipal Academy of Higher education for the support.</p>
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                    <pub-id pub-id-type="doi">10.1038/s41467-020-18149-6</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref20">
                <label>20</label>
                <mixed-citation publication-type="data">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Nayak</surname>
                            <given-names>R</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <data-title>Detection of SARS-CoV-2 in conjunctival secretion and tears in patients with COVID-19 in a tertiary care centre, South India, Dryad</data-title>. Dataset.<year>2022</year>.
                    <pub-id pub-id-type="doi">10.5061/dryad.rn8pk0pdp</pub-id>
                </mixed-citation>
            </ref>
        </ref-list>
    </back>
    <sub-article article-type="reviewer-report" id="report162563">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.142625.r162563</article-id>
            <title-group>
                <article-title>Reviewer response for version 2</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Karunasagar</surname>
                        <given-names>Iddya</given-names>
                    </name>
                    <xref ref-type="aff" rid="r162563a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8783-1269</uri>
                </contrib>
                <aff id="r162563a1">
                    <label>1</label>Technology Enabling Center, Nitte University, Deralakatte, Mangalore, India</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>31</day>
                <month>3</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Karunasagar I</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport162563" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.123556.2"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The authors have tested the presence of SARS-CoV-2 by RT-PCR in conjunctival swabs of patients who were also tested with nasopharyngeal swabs. Data on those who tested positive and negative for conjunctival swabs were compared. Only 11/80 patients tested positive in conjunctival swabs and only one of them had ocular manifestations. This study suggests that ocular secretions can be a potential source of viral transmission.</p>
            <p> </p>
            <p> The study has been carried out using well-established methodology and the data has clinical significance. The results have been discussed well in the context of present status of knowledge in the field.</p>
            <p> </p>
            <p> 
                <bold>Strengths of the study:</bold> The study shows that SARS CoV2 could be present&#x00a0;in the ocular secretions of individuals without ocular manifestations. Therefore ocular secretions should&#x00a0;be considered a source of virus. This warrants adopting measures like handwashing and sanitising hands. This information is very important in considering pathways of transmission of SARS CoV2. The study has been performed using robust methodology.</p>
            <p> </p>
            <p> 
                <bold>Weakness:</bold> The sample size is small and this is a single center study. The weakness does not in any way minimise the significance of the finding, since even in the small sample size, a significant portion of samples were positive for SARS CoV2 virus by RT PCR in ocular secretions.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Infectious diseases</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report150606">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.135672.r150606</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Mathew</surname>
                        <given-names>Anugraha</given-names>
                    </name>
                    <xref ref-type="aff" rid="r150606a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-2058-8783</uri>
                </contrib>
                <aff id="r150606a1">
                    <label>1</label>Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>28</day>
                <month>9</month>
                <year>2022</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Mathew A</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport150606" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.123556.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The manuscript by Nayak 
                <italic>et al</italic>
                <italic>.</italic>&#x00a0;is original, reads well, and is of significant interest to clinicians, patients and policymakers. The authors describe the prevalence of coronavirus in the conjunctival secretions, regardless of specific ocular manifestations. Although SARS-CoV-2 conjunctivitis is rare in relation to the magnitude and prevalence of other manifestations and complications caused by the virus, the ophthalmic route of disease transmission is possible and hence this study is relevant and adds to the current knowledge of COVID-19 testing and prevention measures.</p>
            <p> </p>
            <p> 
                <underline>
                    <bold>Major comments</bold>
                </underline> 
                <list list-type="bullet">
                    <list-item>
                        <p>Since the objective of the study includes a comparison of the RT-PCR positivity rate for SARS-CoV-2 in conjunctival and nasopharyngeal swabs, it would be ideal to include the Ct values obtained with RT-PCR from both the samples. These values would also be a good indicator of the viral load in both samples and provide additional information to the current literature on the topic.</p>
                    </list-item>
                    <list-item>
                        <p>The authors conclude that ocular surface and secretions can be a potential route of viral transmission. Since ACE2 receptors serve as the entry point of the viral particle, a comment or discussion on the presence of these receptors on the ocular surface would be an additional point to support this hypothesis.</p>
                    </list-item>
                </list> </p>
            <p> 
                <underline>
                    <bold>Minor comments</bold>
                </underline>
            </p>
            <p> 
                <bold>Introduction</bold> 
                <list list-type="bullet">
                    <list-item>
                        <p>
                            <bold>Line 1, 2nd paragraph:</bold> "
                            <italic>Clinically majority of patients have symptoms of fever, dry cough, and breathlessness while the less common symptoms include headache, fatigue, confusion, and diarrhoea.</italic>" Maybe modified as "Most patients have symptoms such as fever, dry cough, and breathlessness while the less common symptoms include headache, fatigue, confusion, and diarrhoea."</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Line 4, 3rd paragraph: </bold>"
                            <italic>The transmission of the coronavirus appears mainly through respiratory droplets and direct contact as the major routes for infection.</italic>" Maybe modified as "According to current evidence, COVID-19 virus is primarily transmitted&#x00a0;between people through respiratory droplets and contact routes."</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Line 5, 3rd paragraph: </bold>"
                            <italic>Transmission through the gastrointestinal route, aerosol and eye secretions, is still to be further investigated. The possibility of transmission of the virus through ocular surfaces like the conjunctiva and cornea is still unproven.</italic>" Maybe modified as "The possibility of transmission through the gastrointestinal route, aerosol and eye secretions still needs further investigation. Likewise, the transmission of the virus through ocular surfaces like the conjunctiva and cornea is still unproven."</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Line 7, 3rd paragraph: </bold>"
                            <italic>This highly contagious disease has presented as a medical challenge...</italic>" Maybe modified as "This highly contagious disease represents a medical challenge..."</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Microbiology, Molecular Biology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
        <sub-article article-type="response" id="comment8832-150606">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>BHAT</surname>
                            <given-names>SEVITHA</given-names>
                        </name>
                        <aff>Kasturba Medical College ,Mangalore, India</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>28</day>
                    <month>9</month>
                    <year>2022</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <bold>Reply to Major comments </bold> 
                    <list list-type="order">
                        <list-item>
                            <p>11 of the patients with conjunctival swab positivity had the Ct values for the E and RdRp genes in the range of 25-30. The Ct values of the same patients in the nasopharyngeal swabs were in the range of 15-20. Though Ct value is not an estimate of the viral load, the values were more in the conjunctival swabs compared to the nasopharyngeal swabs.</p>
                        </list-item>
                        <list-item>
                            <p>Previous studies have reported the presence of ACE2 in the conjunctiva, limbus, and cornea, reemphasizing the fact that conjunctiva is susceptible to SARS-CoV-2 infection.
                                <sup>20</sup>
                            </p>
                            <p> Reference 20 - Zhou L, Xu Z, Castiglione GM, Soiberman US, Eberhart CG, Duh EJ. ACE2 and TMPRSS2 are expressed on the human ocular surface, suggesting susceptibility to SARS-CoV-2 infection. 
                                <italic>Ocul Surf</italic>. 2020 Oct;18(4):537-544.</p>
                        </list-item>
                    </list> </p>
                <p> 
                    <bold>Reply to Minor comments </bold> 
                    <list list-type="order">
                        <list-item>
                            <p>
                                <bold>Line 1, 2nd paragraph: please modify the existing sentence as </bold>"Most patients have symptoms such as fever, dry cough, and breathlessness while the less common symptoms include headache, fatigue, confusion, and diarrhoea."</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Line 4, 3rd paragraph: please modify the existing sentence as </bold>"According to current evidence, COVID-19 virus is primarily transmitted&#x00a0;between people through respiratory droplets and contact routes."</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Line 5, 3rd paragraph: please modify the existing sentence as </bold>"The possibility of transmission through the gastrointestinal route, aerosol and eye secretions still needs further investigation. Likewise, the transmission of the virus through ocular surfaces like the conjunctiva and cornea is still unproven."</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Line 7, 3rd paragraph:&#x00a0;please modify the existing sentence as </bold>"This highly contagious disease represents a medical challenge"</p>
                        </list-item>
                    </list>
                </p>
            </body>
        </sub-article>
    </sub-article>
</article>
