<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.76191.2</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Sulfiredoxin-1 blood mRNA expression levels negatively correlate with hippocampal atrophy and cognitive decline</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 2; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Cucos</surname>
                        <given-names>Catalina Anca</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Cracana</surname>
                        <given-names>Ioana</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Dobre</surname>
                        <given-names>Maria</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Popescu</surname>
                        <given-names>Bogdan Ovidiu</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a3">3</xref>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Tudose</surname>
                        <given-names>Catalina</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                    <xref ref-type="aff" rid="a5">5</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Spiru</surname>
                        <given-names>Luiza</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                    <xref ref-type="aff" rid="a6">6</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Manda</surname>
                        <given-names>Gina</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9706-1883</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Niculescu</surname>
                        <given-names>Gabriela</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a7">7</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Milanesi</surname>
                        <given-names>Elena</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-2753-3395</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Victor Babes National Institute of Pathology, Bucharest, 050096, Romania</aff>
                <aff id="a2">
                    <label>2</label>Medinst Diagnostic Romano-German SRL, Bucharest, Romania</aff>
                <aff id="a3">
                    <label>3</label>&#x201c;Carol Davila&#x201d; University of Medicine and Pharmacy, Bucharest, Romania</aff>
                <aff id="a4">
                    <label>4</label>Clinical Hospital Colentina, Bucharest, Romania</aff>
                <aff id="a5">
                    <label>5</label>Prof. Dr. Al. Obregia&#x201d; Psychiatry Clinical Hospital &amp; the Memory Center of the Romanian Alzheimer Society, Section II, Bucharest, Romania</aff>
                <aff id="a6">
                    <label>6</label>&#x201c;Ana Aslan&#x201d; International Foundation, Bucharest, Romania</aff>
                <aff id="a7">
                    <label>7</label>Faculty of Medical Engineering, University Politehnica of Bucharest, Bucharest, Romania</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:elena.k.milanesi@gmail.com">elena.k.milanesi@gmail.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>Author Ioana Cracana is employed by Medinst Diagnostic Romano-German SRL, Bucharest, Romania. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>21</day>
                <month>3</month>
                <year>2022</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2022</year>
            </pub-date>
            <volume>11</volume>
            <elocation-id>114</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>16</day>
                    <month>3</month>
                    <year>2022</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Cucos CA et al.</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/11-114/pdf"/>
            <abstract>
                <p>
                    <bold>Introduction</bold>: Cognitive decline, correlating with hippocampal atrophy, characterizes several neurodegenerative disorders having a background of low-level chronic inflammation and oxidative stress.</p>
                <p>
                    <bold>Methods</bold>: In this cross-sectional study, we examined how cognitive decline and hippocampal subfields volume are associated with the expression of redox and inflammatory genes in peripheral blood. We analyzed 34 individuals with different cognitive scores according to Mini-Mental State Examination, corrected by age and education (adjMMSE). We identified a group presenting cognitive decline (CD) with adjMMSE&lt;27 (n=14) and a normal cognition (NC) group with adjMMSE&#x2265;27 (n=20). A multiparametric approach, comprising structural magnetic resonance imaging measurement of different hippocampal segments and blood mRNA expression of redox and inflammatory genes was applied.</p>
                <p>
                    <bold>Results</bold>: Our findings indicate that hippocampal segment volumes correlate positively with adjMMSE and negatively with the blood transcript levels of 19 genes, mostly redox genes correlating especially with the left subiculum and presubiculum. A strong negative correlation between hippocampal subfields atrophy and 
                    <italic toggle="yes">SRXN1</italic> redox gene is emphasized.</p>
                <p>
                    <bold>Conclusions:</bold> Concluding, these results suggest that 
                    <italic toggle="yes">SRXN1</italic> might be a valuable candidate blood biomarker for non-invasively monitoring the evolution of hippocampal atrophy in CD patients.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>SRXN1</kwd>
                <kwd>MRI</kwd>
                <kwd>blood</kwd>
                <kwd>Cognitive decline</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1">
                    <funding-source>Competitiveness Operational Programme </funding-source>
                    <award-id>29/2016</award-id>
                </award-group>
                <funding-statement>Research and publication of the present study were funded by Competitiveness Operational Programme 2014&#x2013;2020 project P37_732 (contract no. 29/2016), Priority Axis 1, Action 1.1.4, co-financed by the European Funds for Regional Development and Romanian Government funds. The contents of this publication do not necessarily reflect the official position of the European Union or Romanian Government.</funding-statement>
            </funding-group>
        </article-meta>
        <notes>
            <sec sec-type="version-changes">
                <label>Revised</label>
                <title>Amendments from Version 1</title>
                <p>The new version of the article includes: a revised title reporting the full SRXN1 gene name, new citations relevant to the topic and an update of the limitations paragraph.</p>
            </sec>
        </notes>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>1. Introduction</title>
            <p>Cognitive decline is a very early phase of several neurodegenerative disorders, including Alzheimer&#x2019;s disease (AD) that is the main cause of dementia in the elderly population and affects 44 million people worldwide.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup>
            </p>
            <p>Brain degeneration can be evaluated using morphometric estimates obtained with magnetic resonance imaging (MRI). Hippocampus is particularly vulnerable to the aging processes, and its volume has been tied to decline in different cognitive areas including episodic, semantic, working memory, and visuospatial ability.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> Indeed, hippocampal volume on a structural MRI scan represents one of the most valuable brain imaging markers used in clinical research to evaluate the severity and progression of AD.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> In the last years, morphological changes within the hippocampus are being focused on the measurement of hippocampal subfields. A recent study conducted on subjects selected from Alzheimer&#x2019;s Disease Neuroimaging Initiative (ADNI), investigating hippocampal subfield volumes, identified that atrophy of the bilateral CA1, CA2-CA4 and subiculum subfields was higher in AD patients compared to mild cognitive impairment (MCI) individuals and controls, and registered a high atrophy rate in whole hippocampus, CA1 and subiculum subfields of MCI.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> Despite its high diagnostic potential, MRI displays discomforts and feasibility issues, occurring mostly in elderly individuals.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
            </p>
            <p>Molecular aberrations in the AD brain are reflected in the cerebrospinal fluid (CSF) whose levels of &#x03b2;-amyloid 
                <sub>1&#x2013;42</sub>, total TAU and phospho-TAU-181 currently represent the core biomarkers in clinical practice for AD diagnosis. However, the diagnostic use of CSF biomarkers is limited due to invasive collection by lumbar puncture with potential side effects. The urgent need of less invasive, more accessible and safe biomarkers for predicting the risk of AD have led in the last decade to develop a wide research on blood biomarkers for AD risk screening, diagnosis and progression. Recently, some CSF biomarkers relevant for AD have been studied also in blood, such as p-tau181, p-tau217 and p-tau231.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> Plasma p-tau181 seems to be predictive and specific of AD,
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> but its relevance for AD diagnosis and monitoring has still to be investigated longitudinally in larger cohorts.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> In turn, a recent study did not shown any significant correlations between plasma p-tau181, p-tau231 and hippocampal volume.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup>
            </p>
            <p>The etiology of AD is multifactorial, involving both genetic and environmental factors, with a prominent role of oxidative stress and inflammatory disturbances that appear long before symptoms onset. Free radicals such as reactive oxygen species (ROS) generated from physiological metabolic processes, contribute, at physiological concentrations to cell cycle regulation, phagocytosis, and enzyme activation.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> However, excessive generation of ROS leads to oxidative stress causing macromolecule peroxidation, A&#x03b2; metal ion redox potential and mitochondrial dysfunction. All these processes affect the cell homeostasis, the generation of ROS and the up-regulation of A&#x03b2; and p-tau formation,
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> contributing to the progressive deterioration of cognitive functions. The brains of patients with AD also exhibit a sustained inflammatory response that has been found in multiple postmortem studies in AD patients.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> Moreover, impairments in redox and inflammatory pathways have been observed also in peripheral blood from AD patients,
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> and have been associated with low cognitive performance
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup> and AD progression.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
            </p>
            <p>The advance of &#x201c;omics&#x201d; tools is helping in the identification of minimally invasive AD blood biomarkers and therapeutic targets within molecular pathologic networks that include redox metabolism and inflammation, integrated with brain imaging data through novel computational and statistical tools.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup>
            </p>
            <p>The aim of this study was to examine how cognitive decline and changes of hippocampal volumes are associated with redox and inflammatory changes in peripheral blood in order to identify putative blood biomarkers whose levels correlate with progression of cognitive decline and can be easily evaluated for timely disease monitoring. Accordingly, 34 individuals with different cognitive scores were analyzed using a multiparametric approach, comprising MRI measurement of different hippocampal segments and blood mRNA expression of a large panel of inflammatory and oxidative stress related genes.</p>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>2. Methods</title>
            <sec id="sec3">
                <title>2.1 Study cohort</title>
                <p>34 individuals (age 56&#x2013;86 years) were randomly enrolled in this cross-sectional study from the neurology departments of three medical centers in Bucharest, Romania from June 2017 to April 2019. All participants provided written informed consent for their participation and the study was approved by the local ethic committees of the participating hospitals: Clinical Hospital Colentina, 12/11.05.2017; &#x201c;Prof. Dr. Al. Obregia&#x201d; Psychiatry Clinical Hospital, 3/17.05.2017; &#x201c;Ana Aslan&#x201d; National Institute of Gerontology and Geriatrics, 299.1101.2018. The exclusion criteria comprised: (1) acute inflammatory reactions and infections in the last 30 days prior to the study inclusion; (2) history of any type of cancer and autoimmune diseases; (3) acute episodes of morbidities during the last year, before being recruited in the present study; (4) psychiatric illness. The subjects referred to the hospitals for a routine checkup or due to episodes of memory loss. All the individuals underwent neuropsychological evaluation and brain MRI. Mini&#x2013;Mental State Examination (MMSE) was corrected by age and years of education (adjMMSE) as previously reported.
                    <sup>
                        <xref ref-type="bibr" rid="ref20">20</xref>
                    </sup> The individuals were categorized based on their adjMMSE in two groups: one presenting signs of cognitive decline (CD) with adjMMSE&lt;27 (n=14), and another reporting normal cognition (NC) with adjMMSE&#x2265;27 (n=20) (
                    <xref ref-type="table" rid="T1">Table 1</xref>). For a subgroup of 13 subjects neuropsychological evaluation using Montreal Cognitive Assessment (MoCA) was performed at the initial visit (T0) and after 6 months (T1).</p>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>Table 1. </label>
                    <caption>
                        <title>Demographic and clinical characteristics of the individuals included in the study.</title>
                        <p>Differences between CD and NC individuals were evaluated using the t-test for continuous and the &#x03c7;
                            <sup>2</sup> test for categorical variables.</p>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Group (Number)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">CD (N=14)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">NC (N=20)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Significance</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Mean age (years&#x00b1;SD)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">74.7&#x00b1;6.55</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">73.6&#x00b1;7.36</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <italic toggle="yes">p</italic>=0.646</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Sex (%F)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">64.3%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">55%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=0.293; 
                                    <italic toggle="yes">p</italic>=0.588</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Education in years (mean&#x00b1;SD)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">9.79&#x00b1;4.49</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">14.20&#x00b1;3.42</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>
                                        <italic toggle="yes">p=0.003</italic>
                                    </bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>adjMMSE (mean&#x00b1;SD)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">23.59&#x00b1;2.17</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">29.3&#x00b1;1.08</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>
                                        <italic toggle="yes">p&lt;0.001</italic>
                                    </bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Coffee (% consumers)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">71.42%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">80%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <italic toggle="yes">p</italic>=0.562</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Body mass index (mean&#x00b1;SD)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">26.37&#x00b1;3.48</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">27.22&#x00b1;3.87</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <italic toggle="yes">p</italic>=0.517</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Exposure to toxicants (% yes)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">7.1%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">15%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=0.490; 
                                    <italic toggle="yes">p</italic>=0.484</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Childhood environment (% urban)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">35.70%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">70%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>
                                        <italic toggle="yes">&#x03c7;</italic>
                                    </bold>
                                    <sup>
                                        <bold>
                                            <italic toggle="yes">2</italic>
                                        </bold>
                                    </sup>
                                    <bold>
                                        <italic toggle="yes">=3.927; p=0.048</italic>
                                    </bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Adult environment (% urban)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">64.3%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">90%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=3.331; 
                                    <italic toggle="yes">p</italic>=0.068</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Familiarity for AD (% yes)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">14.3%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">25%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=0.578; 
                                    <italic toggle="yes">p</italic>=0.447</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Smokers (% of smokers)</bold>
                                    <xref ref-type="table-fn" rid="tfn1">*</xref>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">15.4%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">26.3%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=0.540; 
                                    <italic toggle="yes">p</italic>=0.463</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Hypertension (% affected)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">85.7 %</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">45%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>
                                        <italic toggle="yes">&#x03c7;</italic>
                                    </bold>
                                    <sup>
                                        <bold>
                                            <italic toggle="yes">2</italic>
                                        </bold>
                                    </sup>
                                    <bold>
                                        <italic toggle="yes">=5.781; p=0.016</italic>
                                    </bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Cardiopathy (% affected)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">71.4%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>
                                        <italic toggle="yes">&#x03c7;</italic>
                                    </bold>
                                    <sup>
                                        <bold>
                                            <italic toggle="yes">2</italic>
                                        </bold>
                                    </sup>
                                    <bold>
                                        <italic toggle="yes">=4.371; p=0.037</italic>
                                    </bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Diabetes (% affected)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=3.173; 
                                    <italic toggle="yes">p</italic>=0.075</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Dyslipidemia (% affected)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">42.9%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=2.072; 
                                    <italic toggle="yes">p</italic>=0.150</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Hypercholesterolemia (% affected)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">50%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=3.387; 
                                    <italic toggle="yes">p</italic>=0.066</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Hypertriglyceridemia (% affected)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">7.1%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">&#x03c7;
                                    <sup>2</sup>=1.472; 
                                    <italic toggle="yes">p</italic>=0.225</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn1">
                                <label>*</label>
                                <p>Not available for one CD and one NC individual.</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
            <sec id="sec4">
                <title>2.2 MRI acquisition</title>
                <p>All MRI scans were performed on 1.5 Tesla Siemens Avanto machine (syngo MR B17) following the Alzheimer's Disease Neuroimaging Initiative ADNI1 protocol (adni.loni.usc.edu/methods/documents/mri-protocols/). The scan protocol included two MP-RAGE: a three-dimensional, T1-weighted gradient echo sequence and a straight axial PD/T2-weighted turbo spin echo sequence (covered below cerebellum through top of head). The following parameters were used: (a). MP-RAGE T1weighted: TR/TE/TI 2400/3.6/1000 ms, sagittal, voxel size 1.3 &#x00d7; 1.3 &#x00d7; 1.2 mm resolution; (b) T2 weighted turbo spin echo TR/TE1/TE2 3000/12/97 ms, in plane resolution 0.9 &#x00d7; 0.9 mm, slice thickness 3 mm, 96 slices, transversal, oriented perpendicularly to the long axis of the hippocampus, covering the whole hippocampal head, body and tail. To ensure quality scans and scanner stability after each subject scan, a quality control scan on a phantom was acquired with an additional coronal MP-RAGE.</p>
                <p>2.2.1 Image quality control</p>
                <p>The image quality was assessed for accuracy of FOV angulation regarding the hippocampal axes, contrast/noise of internal structure of hippocampus and motion artifacts.</p>
                <p>2.2.2 Image processing</p>
                <p>An open source brain image processing software FreeSurfer 6.0 available at 
                    <ext-link ext-link-type="uri" xlink:href="https://surfer.nmr.mgh.harvard.edu/was">https://surfer.nmr.mgh.harvard.edu/was</ext-link> used to perform the automated volumetric analyses for the structural MRI T1-weighted data and/or T2 hippocampal images.
                    <sup>
                        <xref ref-type="bibr" rid="ref21">21</xref>
                    </sup> The FreeSurfer 6.0 pipeline recon - all was run to compute the probabilistic estimated segmented volumes of the left and right whole hippocampus and of the multi-label hippocampal substructures. The hippocampal substructures that are segmented by the software are: hippocampal tail, parasubiculum, presubiculum, subiculum, CA1, CA2 + CA3, CA4, hippocampus&#x2013;amygdala transition area (HATA), granule cell layer of dentate gyrus (GC-DG), molecular layer, fimbria and hippocampal fissure (not included for computing the whole hippocampal volume).</p>
                <p>The steps in the FreeSurfer 6.0 processing perform a motion correction, non-uniform intensity normalization for intensity inhomogeneity correction, affine transformation to Talairach image space and removal of non-brain tissues. The remaining brain image volume is intensity normalized to match the FreeSurfer atlas image intensity histogram. A non-linear warping of the atlas brain image to subject brain image is used in labeling the subcortical structures. To define image features of the anatomy of the brain structures surrounding the hippocampus, a training set of 39 manually labeled 1mm T1-weighted MR scans in combination with 15 
                    <italic toggle="yes">ex vivo</italic> scans from which hippocampal substructures were manually labeled were used to build the probabilistic atlas of hippocampal anatomy.
                    <sup>
                        <xref ref-type="bibr" rid="ref21">21</xref>
                    </sup> The atlas is represented as a tetrahedral mesh, in which each node has a corresponding vector of probabilities for the different structures encoded in the atlas.</p>
                <p>The final segmentation output (aseg.mgz) was then used to generate a tissue classification map using the FreeSurfer Look Up Table of the segmented regions. Labels can be displayed in FreeSurfer's Freeview to assess label accuracy.</p>
            </sec>
            <sec id="sec5">
                <title>2.3 Gene expression analysis in blood</title>
                <p>Venous blood (2.5 mL) was collected in PAXgene Blood RNA Tubes (Qiagen) and RNA was isolated with PAXgene blood RNA kit (Qiagen) according to the manufacturer&#x2019;s protocol. RNA quantification and quality control was performed using Nanodrop 2000 spectrophotometer (Thermo Scientific). RNA (400 ng) was reverse transcribed with the RT2 First Strand Kit (Qiagen). The expression of 84 key genes involved in redox responses and of 84 genes related to inflammatory processes was evaluated with RT2 Profiler&#x2122; PCR Array Human Oxidative Stress Plus (PAHS-065Y, Qiagen, 
                    <italic toggle="yes">Extended data</italic>, Table S1 A)
                    <sup>
                        <xref ref-type="bibr" rid="ref41">41</xref>
                    </sup> and RT
                    <sup>2</sup> Profiler&#x2122; PCR Array Human NF-&#x03ba;B Signalling Pathway (PAHS-025Z, Qiagen, 
                    <italic toggle="yes">Extended data</italic>, Table S1 B).
                    <sup>
                        <xref ref-type="bibr" rid="ref41">41</xref>
                    </sup> The SYBR Green chemistry on an ABI-7500 fast instrument (Thermo Fisher Scientific) was applied. The expression level of each transcript was normalized against the geometric mean of two housekeeping genes (
                    <italic toggle="yes">HPRT1</italic> and 
                    <italic toggle="yes">RPLP0</italic>) whose stability in blood was previously reported.
                    <sup>
                        <xref ref-type="bibr" rid="ref22">22</xref>
                    </sup> Gene expression levels were calculated as 2
                    <sup>&#x2212;&#x0394;CT</sup> values.</p>
            </sec>
            <sec id="sec6">
                <title>2.4 Statistical analysis</title>
                <p>Statistical analysis was performed using the Statistical Package for Social Sciences, Version 17.0 (SPSS Inc) and GraphPad Prism 8. Possible demographic and clinical differences between CD and NC individuals were evaluated through the t-test for continuous and the &#x03c7;
                    <sup>2</sup> test for categorical variables. Due to the small sample size, the volumetric difference between CD and NC was evaluated by the Mann-Whitney nonparametric test. Pearson's correlation analysis was performed to correlate neuroimaging data with adjMMSE, as well as with mRNA levels in blood. All the original data used in the analysis are reported in 
                    <italic toggle="yes">Underlying data.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref41">41</xref>
                    </sup>
                </p>
            </sec>
        </sec>
        <sec id="sec7" sec-type="results">
            <title>3. Results</title>
            <p>The volume of hippocampal subfields was analyzed in connection with the registered cognitive score (adjMMSE) in a group of 34 individuals. This cohort was divided in two groups according to adjMMSE: the CD group (n=14) presenting cognitive decline (adjMMSE 17.91-26.08) and the NC group (n=20) reporting normal cognition (MMSE 27-30). The two CD and NC groups were homogenous for age, sex, and body mass index, as shown in 
                <xref ref-type="table" rid="T1">Table 1</xref>. In terms of comorbidities, the differences between the two groups were not significant for diabetes, dyslipidemia, hypercholesterolemia and hypertriglyceridemia, but were significant for hypertension and cardiopathy. Therefore, we performed partial correlations (controlling for the effect of hypertension and/or cardiopathy) between the selected hippocampal subfields volume and adjMMSE (
                <italic toggle="yes">Extended data</italic>, Table S2 A),
                <sup>
                    <xref ref-type="bibr" rid="ref41">41</xref>
                </sup> as well as between blood Sulfiredoxin-1 (
                <italic toggle="yes">SRXN1</italic>) mRNA levels and selected hippocampal subfields volume and adjMMSE in CD individuals (
                <italic toggle="yes">Extended data</italic>, Table S2 B).
                <sup>
                    <xref ref-type="bibr" rid="ref41">41</xref>
                </sup> The results obtained with hypertension, cardiopathy, and both hypertension and cardiopathy as control variables, were very similar to those obtained previously using bivariate correlations. This suggests that these comorbidities do not influence the found correlations between gene expression levels and selected hippocampal subfields volume and adjMMSE. Moreover, in a paper recently published by our team, aiming to identify gene expression changes that might underlie pathologic processes in elderly patients with hypertension and cardiovascular disease, the expression levels of the genes of interest were not found to be affected by these pathologies.
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup>
            </p>
            <p>We found that the CD subjects presented a significant volume reduction of multiple hippocampal segments compared to NC individuals: left hippocampus, subiculum, pre-subiculum, CA1, molecular layer HP, GC ML DG, HATA and left/right CA4 (
                <xref ref-type="table" rid="T2">Table 2</xref>).</p>
            <table-wrap id="T2" orientation="portrait" position="float">
                <label>Table 2. </label>
                <caption>
                    <title>Significant differences of hippocampal subfields volume between the CD and NC groups.</title>
                    <p>Comparisons were made using Mann-Whitney nonparametric test.</p>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Hippocampal subfields</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Group</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Volume (mm
                                <sup>3</sup>)</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">SD</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">P</italic>-value</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>Whole hippocampus left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2578.98</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">486.71</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.015</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">2997.21</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">355.77</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>Subiculum left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">328.48</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">68.39</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.010</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">384.63</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">44.00</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>Presubiculum left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">227.99</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">46.96</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.027</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">272.20</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">49.39</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>CA1 left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">493.37</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">84.29</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.017</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">572.47</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">81.66</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>Molecular layer HP left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">421.64</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">83.89</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.012</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">494.47</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">62.62</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>GC ML DG left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">214.89</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">48.16</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.011</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">254.30</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">32.74</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>CA4 left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">188.99</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">40.12</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.023</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">222.99</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">27.59</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>CA4 right</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">208.85</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">36.93</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.047</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">231.14</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">26.14</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>HATA left</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">CD</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">41.67</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11.68</td>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>
                                    <italic toggle="yes">0.023</italic>
                                </bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">NC</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">51.00</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">9.32</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>A representative axial (A), sagittal (B) and coronal (C) view of hippocampal segmentation is presented in 
                <xref ref-type="fig" rid="f1">Figure 1</xref> for one NC individual and one CD patient, showing marked hippocampal atrophy in the CD patient.</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>MRI scans of the hippocampus segmentation for a representative NC individual with an MMSE value of 30 (upper panel) and a representative CD patient with an adjMMSE value of 17.9 (lower panel): axial (A), sagittal (B) and coronal (C) view.</title>
                </caption>
                <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/122375/c92f4621-006b-4024-bf2d-4a75085fe8ea_figure1.gif"/>
            </fig>
            <p>We also correlated the volume of the selected hippocampal segments (
                <xref ref-type="table" rid="T2">Table 2</xref>) with the adjMMSE values. A statistically significant positive correlation was found exclusively in the CD group (
                <xref ref-type="table" rid="T3">Table 3</xref>) showing a linear association between cognitive decline and hippocampal atrophy.</p>
            <table-wrap id="T3" orientation="portrait" position="float">
                <label>Table 3. </label>
                <caption>
                    <title>Correlations between selected hippocampal subfields volume and adjMMSE in all individuals, CD and NC groups.</title>
                    <p>L=left side; R=right side. Correlations were established using Pearson's correlation analysis.</p>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="2" rowspan="2" valign="top">Hippocampal subfields</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">All individuals (N=34)</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">CD (N=14)</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">NC (N=20)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Pearson r</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">P-value</italic>
                            </th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Pearson r</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">P-value</italic>
                            </th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Pearson r</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">P-value</italic>
                            </th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Whole Hippocampus</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.583</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">&lt;0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.763</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-0.187</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.431</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Subiculum</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.631</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">&lt;0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.765</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.046</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.846</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>CA1</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.486</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.004</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.714</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.004</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-0.403</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.078</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Presubiculum</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.572</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">&lt;0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.731</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.003</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.189</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.426</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>Molecular layer HP</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.575</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">&lt;0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.741</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.002</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-0.187</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.430</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>GC ML DG</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.551</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.687</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.007</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-0.279</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.234</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="top">
                                <bold>CA4</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.554</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.691</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.006</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-0.318</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.172</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>R</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.499</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.003</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.793</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.001</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-0.238</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.313</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>HATA</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>L</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.462</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.006</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.497</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">
                                <bold>
                                    <italic toggle="yes">0.071</italic>
                                </bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-0.232</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.324</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>The observed volume reduction was not age-dependent, considering that no significant correlations were found between the volume of the selected hippocampal segments and age (
                <italic toggle="yes">P</italic>&gt;0.05).</p>
            <p>We further correlated the blood expression levels of the 84 redox and the 84 inflammation genes with the volume of the selected hippocampal segments, reported in 
                <xref ref-type="table" rid="T2">Table 2</xref>. All the correlations are presented in 
                <italic toggle="yes">Extended data</italic>, Table S3 A-B-C.
                <sup>
                    <xref ref-type="bibr" rid="ref41">41</xref>
                </sup> The statistically significant correlations (
                <italic toggle="yes">P</italic>&lt;0.05) are reported in the correlation matrix shown in 
                <xref ref-type="fig" rid="f2">Figure 2A</xref> and 
                <xref ref-type="fig" rid="f2">B</xref>, and the most significant (
                <italic toggle="yes">P</italic>&lt;0.05 and -0.60 &gt;r&gt; 0.60) are presented in 
                <xref ref-type="fig" rid="f3">Figure 3</xref>. More specifically, 23 genes correlated with hippocampal subfields volume in the CD group (
                <italic toggle="yes">P</italic>&lt;0.05, -0.60 &gt;r&gt; 0.60). Most of these genes (19 out of 23) negatively correlated with left subiculum and presubiculum, suggesting that high transcript levels in blood correspond to a potentially pathologic atrophy of these brain areas. Most of the identified genes belong to redox pathways. These include oxidative stress responsive genes (
                <italic toggle="yes">RNF7</italic>, 
                <italic toggle="yes">SIRT2</italic>, 
                <italic toggle="yes">DUOX1</italic>, 
                <italic toggle="yes">DUSP1</italic> and 
                <italic toggle="yes">LHPP</italic>), genes involved in ROS production (
                <italic toggle="yes">DUOX1</italic>, 
                <italic toggle="yes">CYBB</italic>), glutathione metabolism (
                <italic toggle="yes">GPX1</italic>, 
                <italic toggle="yes">GPX2</italic>, 
                <italic toggle="yes">GPX4</italic> and 
                <italic toggle="yes">GSS</italic>), arachidonic acid metabolism (
                <italic toggle="yes">GPX1</italic>, 
                <italic toggle="yes">GPX2</italic>, 
                <italic toggle="yes">ALOX12</italic> and 
                <italic toggle="yes">PTGS1</italic>), ferroptosis (
                <italic toggle="yes">GPX4</italic>, 
                <italic toggle="yes">GSS</italic>, 
                <italic toggle="yes">FTH1</italic> and 
                <italic toggle="yes">CYBB</italic>) and other antioxidant mechanisms (
                <italic toggle="yes">PRDX5</italic> and 
                <italic toggle="yes">PRDX6</italic>). Only four inflammatory genes (
                <italic toggle="yes">FOS</italic>, 
                <italic toggle="yes">TLR9</italic>, 
                <italic toggle="yes">ALOX12</italic> and 
                <italic toggle="yes">PTGS1</italic>) correlated negatively with the volume of left subiculum and pre-subiculum. Of note, 
                <italic toggle="yes">ALOX12</italic> and 
                <italic toggle="yes">PTGS1</italic> exhibit overlapping functions both in inflammation and in redox-mediated processes.</p>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Correlation heat maps between (A) the redox genes blood levels and hippocampal segments volume; (B) the inflammatory genes blood levels and hippocampal segments volume.</title>
                    <p>On the right panel are reported correlations in CD individuals and on the left in NC individuals. Stars indicate significant correlations (
                        <italic toggle="yes">P</italic>&lt;0.05). Correlations were established using Pearson's correlation analysis.</p>
                </caption>
                <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/122375/c92f4621-006b-4024-bf2d-4a75085fe8ea_figure2.gif"/>
            </fig>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <title>Redox and inflammatory genes significantly correlating with hippocampal segments in CD.</title>
                    <p>Blue font indicates negative correlations (r&lt;-0.60) and red font positive correlations (r&gt;0.60). *The gene levels correlate (r&lt;-0.60) in subiculum left both in CD and NC. &#x03b3;Correlates in presubiculum left with r=-0.59. &#x03b3;&#x03b3;Correlates in subiculum left with r=-0.55. &#x03b3;&#x03b3;&#x03b3;Correlates in subiculum left with r=-0.54. Correlations were established using Pearson's correlation analysis.</p>
                </caption>
                <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/122375/c92f4621-006b-4024-bf2d-4a75085fe8ea_figure3.gif"/>
            </fig>
            <p>As shown in 
                <xref ref-type="fig" rid="f3">Figure 3</xref>, eighteen genes exhibited negative correlations with both left subiculum and presubiculum. The only gene specifically correlating with left subiculum atrophy was 
                <italic toggle="yes">FTH1.</italic> Meanwhile, three genes strongly correlated negatively either with the left subiculum (
                <italic toggle="yes">PRDX5</italic>) or presubiculum (
                <italic toggle="yes">GPX2</italic> and 
                <italic toggle="yes">GSS</italic>), without being exclusively associated with a particular hippocampal area.</p>
            <p>While negative correlations between gene expression and volume of the left subiculum and/or presubiculum were highlighted, positive correlations were observed instead in other hippocampal segments, indicating that the atrophy of these segments is associated with a decrease in blood gene expression. Thus, two redox genes showed positive correlations with various left segments: 
                <italic toggle="yes">EPHX</italic> correlated with left GC ML DG, CA4 and HATA, while 
                <italic toggle="yes">TTN</italic> with left CA1 and CA4. Regarding inflammatory genes, only 
                <italic toggle="yes">NFKBIE</italic> had a positive correlation with HATA left volume, while 
                <italic toggle="yes">MALT1</italic> positively correlated with several left segments, including CA4, GC ML DG and molecular layer (
                <xref ref-type="fig" rid="f3">Figure 3</xref>).</p>
            <p>Among the genes presented in 
                <xref ref-type="fig" rid="f3">Figure 3</xref>, we emphasize the redox gene 
                <italic toggle="yes">SRXN1</italic>, since its blood levels in CD individuals negatively correlated with the volume of many hippocampal segments. These include the left side of whole hippocampus (r=-0.62, 
                <italic toggle="yes">P</italic>=0.018) (
                <xref ref-type="fig" rid="f4">Figure 4A</xref>), subiculum (r=-0.77, 
                <italic toggle="yes">P</italic>=0.001), presubiculum (r=-0.73, 
                <italic toggle="yes">P</italic>=0.003) and molecular layer (r=-0.61, 
                <italic toggle="yes">P</italic>=0.022) (
                <xref ref-type="fig" rid="f4">Figure 4B</xref>, 
                <xref ref-type="fig" rid="f4">C</xref>, 
                <xref ref-type="fig" rid="f4">D</xref>), as well as with the right side of CA4 (r=-0.62, 
                <italic toggle="yes">P</italic>=0.017) (
                <xref ref-type="fig" rid="f4">Figure 4E</xref>).</p>
            <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                <label>Figure 4. </label>
                <caption>
                    <title>Correlations between blood 
                        <italic toggle="yes">SRXN1</italic> mRNA levels and hippocampal subfields volume, (A) whole hippocampus left; (B) subiculum left; (C) presubiculum left; (D) molecular layer left: (E) CA4 right, and (F) adjMMSE in CD individuals.</title>
                    <p>
                        <italic toggle="yes">SRXN1</italic> levels are expressed as 2
                        <sup>-&#x2206;CT</sup> values.</p>
                </caption>
                <graphic id="gr4" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/122375/c92f4621-006b-4024-bf2d-4a75085fe8ea_figure4.gif"/>
            </fig>
            <p>The selected genes associated with the reduction of hippocampal subfields volume (
                <xref ref-type="fig" rid="f2">Figure 2</xref>) were further correlated with the adjMMSE values. Only 
                <italic toggle="yes">SRXN1</italic> significantly correlated with the adjMMSE value specifically in CD individuals (r=-0.628, 
                <italic toggle="yes">P</italic>=0.016) (
                <xref ref-type="fig" rid="f4">Figure 4F</xref>), but not in NC individuals. Summarizing, our results regarding 
                <italic toggle="yes">SRXN1</italic> pointed out that the increase of its transcript in the blood of individuals with CD is accompanied by atrophy in different hippocampal subfields, and this increase follows the cognitive decline measured with the MMSE test.</p>
            <p>Moreover, for a subgroup of 13 individuals neuropsychological evaluation using MoCA was also performed at the initial visit (T0) and after 6 months (T1). From this subgroup six individuals presented progressive cognitive decline (MoCA mean value T0 = 20.33&#x00b1;4.50 and T1 = 15.91&#x00b1;5.46; Wilcoxon Signed Rank test, 
                <italic toggle="yes">P</italic>=0.027), and seven remained cognitively stable. We also performed a Mann-Whitney U test between the 
                <italic toggle="yes">SRXN1</italic> blood expression levels comparing the stable and the progressive cognitive decline groups, and although was not significant, probably due to the small number of subjects, a difference in gene expression levels was observed between the two groups in term of fold change (
                <italic toggle="yes">P</italic>=0.101, FC=2.32, 
                <italic toggle="yes">Extended data</italic>, Figure S4
                <sup>
                    <xref ref-type="bibr" rid="ref41">41</xref>
                </sup>). This may suggest that elevated 
                <italic toggle="yes">SRXN1</italic> blood expression levels may precede cognitive decline.</p>
        </sec>
        <sec id="sec8" sec-type="discussion">
            <title>4. Discussion</title>
            <p>In this study we investigated the correlation between various hippocampal subfields volume and the expression profile of 84 redox and 84 inflammatory genes in the blood of CD and NC individuals, in the context of cognitive decline and age. We found a significant reduction in the volume of the left part of whole hippocampus and seven other segments in CD individuals compared to NC, which also correlated well with adjMMSE score, specifically in the CD group. It is worth noticing that MMSE is the most frequently used and recommended cognition test, followed by the Montreal Cognitive Assessment (MoCA) and the clock-drawing test,
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup> and its adjustment with age and educational level is recommended.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> It has been reported that atrophy of the left side of hippocampus plays a critical role in episodic verbal memory,
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup> and may predict longitudinal decline in visuospatial function.
                <sup>
                    <xref ref-type="bibr" rid="ref25">25</xref>
                </sup> A meta-analysis showed a consistent left-less-than-right hippocampal volume in MCI individuals compared to controls,
                <sup>
                    <xref ref-type="bibr" rid="ref26">26</xref>
                </sup> and several studies reported that patients with dementia presented a higher atrophy of left hippocampus compared to the contralateral part.
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref26">26</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref28">28</xref>
                </sup> Moreover, asymmetry and lateralization of hippocampal subfields in AD and MCI patients have been recently reported.
                <sup>
                    <xref ref-type="bibr" rid="ref29">29</xref>
                </sup>
            </p>
            <p>Although we did not find significant gene expression differences between CD and NC, it appears that a volume decrease in hippocampal segments was well correlated with the transcript levels of 23 blood genes in the CD group. The highest number of correlations was observed with the subiculum and presubiculum left, which is considered to be the earliest hippocampal anatomical marker of AD.
                <sup>
                    <xref ref-type="bibr" rid="ref30">30</xref>
                </sup> Most of the correlating genes are involved in redox regulation, emphasizing that changes in the redox balance seem to be relevant in early stages of disease. Multiple lines of evidence have shown that oxidative stress is the earliest event in AD that precedes by decades the onset of clinical dementia. During the diseases progression, this mechanism is accompanying by compensatory responses such as the induction of anti-oxidant responses that may provide some protective mechanisms to ensure that neuronal cells are not irreversibly damaged by the oxidative insult.
                <sup>
                    <xref ref-type="bibr" rid="ref31">31</xref>
                </sup>
            </p>
            <p>The negative correlations between the transcript levels of several redox genes and the hippocampus segments volume suggested that in CD patients, a potential increase of the oxidative activity in the blood of CD patients correlated with hippocampal atrophy, especially in the left subiculum and presubiculum. The identified redox genes are known to be involved in ROS production (
                <italic toggle="yes">DUOX1</italic>, 
                <italic toggle="yes">CYBB</italic>) and in arachidonic acid metabolism (
                <italic toggle="yes">GPX1</italic>, 
                <italic toggle="yes">GPX2</italic>, 
                <italic toggle="yes">ALOX12</italic> and 
                <italic toggle="yes">PTGS1</italic>), as well as in antioxidant responses, encompassing peroxiredoxins (
                <italic toggle="yes">PRDX5</italic> and 
                <italic toggle="yes">PRDX6</italic>), genes involved in glutathione metabolism (
                <italic toggle="yes">GPX1</italic>, 
                <italic toggle="yes">GPX2</italic>, 
                <italic toggle="yes">GPX4</italic> and 
                <italic toggle="yes">GSS</italic>) and other redox-regulated genes (
                <italic toggle="yes">RNF7</italic>, 
                <italic toggle="yes">SIRT2</italic>, 
                <italic toggle="yes">DUOX1</italic>, 
                <italic toggle="yes">DUSP1</italic> and 
                <italic toggle="yes">LHPP</italic>). Three of these genes (
                <italic toggle="yes">GPX2</italic>, 
                <italic toggle="yes">FTH1</italic> and 
                <italic toggle="yes">SRXN1</italic>) are targets of the transcription factor Nrf2 which is the master inducer of antioxidant responses against oxidative and electrophilic challenges.
                <sup>
                    <xref ref-type="bibr" rid="ref32">32</xref>
                </sup> Alteration of the redox balance due to defective Nrf2 activity has been associated with cognitive impairment.
                <sup>
                    <xref ref-type="bibr" rid="ref33">33</xref>
                </sup> As such, hippocampal atrophy in early stages of disease seem to be associated with an antioxidant response in blood, aimed to restore redox homeostasis. In turn, 
                <italic toggle="yes">SIRT2</italic>, a member of the sirtuin family with a pathological role in AD, negatively correlating with hippocampal volume, could be therapeutically downregulated to improve cognitive abilities in AD patients.
                <sup>
                    <xref ref-type="bibr" rid="ref34">34</xref>
                </sup> The negative correlation of the left subiculum and presubiculum volume with the levels of the dual specificity phosphatase 
                <italic toggle="yes">DUSP1,</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref35">35</xref>
                </sup> involved in the pro-inflammatory toll-like receptor signaling,
                <sup>
                    <xref ref-type="bibr" rid="ref36">36</xref>
                </sup> along with 
                <italic toggle="yes">FOS</italic>, a gene involved in cell proliferation, differentiation, transformation, and apoptotic cell death,
                <sup>
                    <xref ref-type="bibr" rid="ref37">37</xref>
                </sup> suggests that even mild hippocampal atrophy might be associated with systemic inflammatory responses in blood.</p>
            <p>One of the most interesting findings of this work is the strong negative correlations between 
                <italic toggle="yes">SRXN1</italic> blood transcript levels, hippocampal subfields atrophy and cognitive impairment. To our knowledge, this is the first study that highlights 
                <italic toggle="yes">SRXN1</italic> as a useful blood-based biomarker that is able to reflect in blood the cognitive decline accompanied by hippocampal atrophy in patients with signs of memory loss. The neuroprotective effect of SRXN1 has been shown in several 
                <italic toggle="yes">in vitro</italic> and 
                <italic toggle="yes">in vivo</italic> studies, and SRXN1 it has been proposed as a therapeutic target for chronic neurodegenerative diseases.
                <sup>
                    <xref ref-type="bibr" rid="ref38">38</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref40">40</xref>
                </sup> The 
                <italic toggle="yes">in vitro</italic> studies performed so far on the connection between SRXN1 and CNS have shown that SRXN1 can protect nerve cells from oxidative damage induced by hydrogen peroxide due to its antioxidant and anti-apoptotic action.
                <sup>
                    <xref ref-type="bibr" rid="ref41">41</xref>
                </sup> Furthermore, it has been shown that SRXN1 may protect astrocytes from H
                <sub>2</sub>O
                <sub>2</sub>-induced oxidative stress injury by activating the Notch signaling pathway,
                <sup>
                    <xref ref-type="bibr" rid="ref42">42</xref>
                </sup> and to protect cells against mitochondrial dysfunction.
                <sup>
                    <xref ref-type="bibr" rid="ref43">43</xref>
                </sup> Additionally, other 
                <italic toggle="yes">in vitro</italic> studies on spinal cord neurons demonstrated that SRXN1 mRNA and protein overexpression has a positive impact by attenuating oxidative damages and decreasing neuronal apoptosis. Moreover, it seems that the cytoprotective transcription factor Nrf2 is directly controlling the expression levels of the antioxidant 
                <italic toggle="yes">SRXN1</italic> gene in astrocytes.
                <sup>
                    <xref ref-type="bibr" rid="ref44">44</xref>
                </sup> Most probably, the negative correlation between 
                <italic toggle="yes">SRXN1</italic> transcript levels and pathologic brain atrophy derives from an enhanced systemic oxidative stress in CD patients which triggers the activation of various antioxidant mechanisms, such as those mediated by 
                <italic toggle="yes">SRXN1.</italic>
            </p>
            <p>The findings of this study indicate that volume changes in hippocampal segments are negatively correlating with the blood transcript levels of 19 genes, most of them being involved in redox regulation. Significant correlations were found mainly with the left part of subiculum and presubiculum of individuals with cognitive decline. Our results particularly highlight the 
                <italic toggle="yes">SRXN1</italic> gene, whose mRNA blood levels exhibited a tendency to increase with cognition decline and with the level of the hippocampal atrophy in five segments. 
                <italic toggle="yes">SRXN1</italic> might be a valuable candidate blood biomarker for non-invasively monitoring in the blood the evolution of hippocampal atrophy in patients with mild cognitive decline. The limitations of this study are the A major limit of this study is the small number of the investigated cases and the evaluation of only 84 key genes involved in redox responses and of 84 genes related to inflammatory processes, using target arrays. Results should be further validated in a larger and longitudinal cohort.</p>
        </sec>
        <sec id="sec9">
            <title>Data availability</title>
            <sec id="sec10">
                <title>Underlying data</title>
                <p>Harvard Dataverse: Underlying data for &#x2018;SRXN1 blood levels negatively correlate with hippocampal atrophy and cognitive decline&#x2019;. 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.7910/DVN/I2UBIF">
                        <sans-serif>https://doi.org/10.7910/DVN/I2UBIF</sans-serif>
                    </ext-link>
                    <sans-serif>.</sans-serif>
                    <sup>
                        <xref ref-type="bibr" rid="ref45">45</xref>
                    </sup>
                </p>
            </sec>
            <sec id="sec11">
                <title>Extended data</title>
                <p>Harvard Dataverse: Extended data for &#x2018;SRXN1 blood levels negatively correlate with hippocampal atrophy and cognitive decline&#x2019;. 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.7910/DVN/I2UBIF">
                        <sans-serif>https://doi.org/10.7910/DVN/I2UBIF</sans-serif>
                    </ext-link>
                    <sans-serif>.</sans-serif>
                    <sup>
                        <xref ref-type="bibr" rid="ref45">45</xref>
                    </sup>
                </p>
                <p>Data are available under the terms of the 
                    <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/">Creative Commons Zero &#x201c;No rights reserved&#x201d; data waiver</ext-link> (CC0 1.0 Public domain dedication).</p>
            </sec>
        </sec>
        <sec id="sec12">
            <title>Author contributions</title>
            <p>CAC and EM designed and coordinated the study. MD, CAC, IC and GN performed the laboratory experiments, contributed to data processing and writing. BOP, CT and LS were responsible of the collection and diagnosis of the samples included in the study. EM and CAC were responsible of data processing, statistical analysis and wrote the first draft of the manuscript. GM gave her contribution in critical revision, data interpretation and writing. All authors discussed the results, commented on the manuscript and agreed to the published version of the manuscript.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments</title>
            <p>The authors thank the patients involved in the study for the generous collaboration.</p>
        </ack>
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                        </name>

                        <name name-style="western">
                            <surname>Zhou</surname>
                            <given-names>Y</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Sulfiredoxin-1 attenuates oxidative stress via Nrf2/ARE pathway and 2-Cys Prdxs after oxygen-glucose deprivation in astrocytes.</article-title>
                    <source>

                        <italic toggle="yes">J. Mol. Neurosci.</italic>
</source>
                    <year>2015</year>;<volume>55</volume>:<fpage>941</fpage>&#x2013;<lpage>950</lpage>.
                    <pub-id pub-id-type="pmid">25407820</pub-id>
                    <pub-id pub-id-type="doi">10.1007/s12031-014-0449-6</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref45">
                <label>45</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Milanesi</surname>
                            <given-names>E</given-names>
                        </name>
</person-group>:
                    <article-title>Hippocampal MRI data, blood mRNA expression of 84 redox and 84 inflammatory genes and cognitive score in 34 elderly individuals.</article-title>
                    <source>

                        <italic toggle="yes">Harvard Dataverse.</italic>
</source>
                    <year>2022</year>;<volume>V1</volume>.
                    <pub-id pub-id-type="doi">10.7910/DVN/I2UBIF</pub-id>
                </mixed-citation>
            </ref>
        </ref-list>
    </back>
    <sub-article article-type="reviewer-report" id="report121476">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.80158.r121476</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Genc</surname>
                        <given-names>Sermin</given-names>
                    </name>
                    <xref ref-type="aff" rid="r121476a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r121476a1">
                    <label>1</label>International Biomedicine and Genome Center, &#x0130;zmir, Turkey</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>18</day>
                <month>2</month>
                <year>2022</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Genc S</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport121476" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.76191.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>In this manuscript,&#x00a0;Milanesi 
                <italic>et al.</italic>&#x00a0;analyzed the relationship between cognitive decline and hippocampal subfield atrophy and redox and inflammatory gene expression in the blood. The study is well organized and the results are presented quite clearly. I disagree with the first reviewer's opinion on the necessity of RNA sequencing. I think that targeted analyzes are more informative than large scale analyses.</p>
            <p> </p>
            <p> Although the number of cases included in the study was small, the inclusion and exclusion criteria were clearly defined. In addition, I found the corrections of MMSE scores according to age and education very important for the reliability of the results.</p>
            <p> </p>
            <p> The authors performed volumetric analyses of hippocampal substructures by using MRI. While measuring the total hippocampal volume in general, the evaluation of hippocampal substructures is one of the strengths of the study.</p>
            <p> </p>
            <p> Finally, blood expression levels of several genes (redox and inflammation) were evaluated by qPCR.&#x00a0; Inflammation and oxidative stress are two important mechanisms involved in the pathogenesis of neurodegenerative diseases such as Alzheimer's with cognitive dysfunction. For this reason, I considered it a correct approach to perform gene expression analysis targeting these two mechanisms.</p>
            <p> </p>
            <p> An important issue here is how peripheral gene expression changes occur in a situation affecting the central nervous system. Perhaps this issue should be considered in the discussion.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Neuroscience, Neurobiology, Alzheimer's disease, biomarker</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report121474">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.80158.r121474</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Gurwitz</surname>
                        <given-names>David</given-names>
                    </name>
                    <xref ref-type="aff" rid="r121474a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9363-1869</uri>
                </contrib>
                <aff id="r121474a1">
                    <label>1</label>Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel-Aviv, Israel</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>31</day>
                <month>1</month>
                <year>2022</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Gurwitz D</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport121474" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.76191.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This is a well-perceived and accomplished study reporting on correlations between cognition status (MMSE scores), hippocampal volumes (MRI), and&#x00a0;blood mRNA expression levels of redox and inflammatory genes (Qiagen&#x00a0;PCR Array Human Oxidative Stress Plus). The conclusions are convincingly supported by the reported findings, which (albeit requiring validation by larger cohorts) add to our understanding on the biology of dementia - in particular regarding oxidative stress and inflammation.&#x00a0;</p>
            <p> </p>
            <p> The article would benefit from addressing the following minor points. 
                <list list-type="order">
                    <list-item>
                        <p>The title should be edited to reflect the fact that mRNA levels were measured (rather than just " 
                            <italic>SRXN1</italic> blood levels "). Additionally, I think it would be better to use the full gene name, Sulfiredoxin-1, rather than its abbreviation, in the title. I, therefore, suggest changing the title to " Sulfiredoxin-1 blood mRNA expression levels negatively correlate with hippocampal atrophy and cognitive decline".</p>
                    </list-item>
                    <list-item>
                        <p>The full 
                            <italic>SRXN1</italic> gene name, Sulfiredoxin-1, should be used (followed by its gene symbol) also in the Abstract and for the first time that it is mentioned in the main text.</p>
                    </list-item>
                    <list-item>
                        <p>The authors conclude in the last sentence of their Discussion that a "major limit of this study is the small number of the investigated cases. Results should be further validated in a larger and longitudinal cohort." They should also mention that the use of commercial microarrays for only " 84 key genes involved in redox responses and of 84 genes related to inflammatory processes". Future studies should ideally attempt to validate the present findings not only with larger cohorts but also with RNA-seq.</p>
                    </list-item>
                    <list-item>
                        <p>The discussion on the relevance of 
                            <italic>SRXN1</italic> to dementia should be expanded by citing at least some of the following published studies:</p>
                    </list-item>
                </list> 
                <list list-type="bullet">
                    <list-item>
                        <p>Wu J 
                            <italic>et al</italic> 2017. Neuroprotective effects of sulfiredoxin-1 during cerebral ischemia/reperfusion oxidative stress injury in rats.
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-121474-1">1</xref>
                            </sup>
                        </p>
                    </list-item>
                    <list-item>
                        <p>Yu 
                            <italic>et al</italic> 2015. Sulfiredoxin-1 protects primary cultured astrocytes from ischemia-induced damage.
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-121474-2">2</xref>
                            </sup>
                        </p>
                    </list-item>
                    <list-item>
                        <p>Sunico 
                            <italic>et al</italic> 2016. Role of sulfiredoxin as a peroxiredoxin-2 denitrosylase in human iPSC-derived dopaminergic neurons.
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-121474-3">3</xref>
                            </sup>
                        </p>
                    </list-item>
                    <list-item>
                        <p>Wu 
                            <italic>et al</italic> 2012. c-Jun-dependent sulfiredoxin induction mediates BDNF protection against mitochondrial inhibition in rat cortical neurons.
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-121474-4">4</xref>
                            </sup>
                        </p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>RNA biomarkers for neuropsychiatric disorders</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
        <back>
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