<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="other" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.121947.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Genome Note</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Identification of the exuviae of larva from 
                    <italic>Teinopalpus aureus</italic> Mell, 1923 using the complete mitochondrial genome</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Liu</surname>
                        <given-names>Lei-Lei</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Zhang</surname>
                        <given-names>Li-Hua</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Weng</surname>
                        <given-names>Guo-Hang</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Wang</surname>
                        <given-names>Wei-Qin</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Gong</surname>
                        <given-names>Xi-Cheng</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Wang</surname>
                        <given-names>Shan-Biao</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Zhang</surname>
                        <given-names>Shu-Sheng</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-3031-5375</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>The Management Center of Wuyanling National Natural Reserve in Zhejiang, Taishun, Zhejiang, 325500, China</aff>
                <aff id="a2">
                    <label>2</label>Taishun County Environmental Protection Bureau, Taishun, Zhejiang, 325500, China</aff>
                <aff id="a3">
                    <label>3</label>Taishun County Tourism Development Investment Limited Company, Taishun, Zhejiang, 325500, China</aff>
                <aff id="a4">
                    <label>4</label>Key Lab of Wildlife Biotechnology, Conservation and Utilization of Zhejiang Province, Zhejiang Normal University, Jinhua, Zhejiang, 321004, China</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:zhangshusheng323@163.com">zhangshusheng323@163.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>31</day>
                <month>10</month>
                <year>2022</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2022</year>
            </pub-date>
            <volume>11</volume>
            <elocation-id>1232</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>18</day>
                    <month>10</month>
                    <year>2022</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Liu LL et al.</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/11-1232/pdf"/>
            <abstract>
                <p>
                    <italic toggle="yes">Teinopalpus aureus</italic> Mell (Lepidoptera: Papilionidae) is distributed throughout China, Vietnam and Laos, and is listed as a Class I species in China. To identify whether the exuviae of larva is belonging to 
                    <italic toggle="yes">Teinopalpus aureus</italic> Mell, 1923 or not, and to compare the gene structure and genetic differences among the known populations, ten mitogenomes of 
                    <italic toggle="yes">T. aureus</italic> from the exuviae of larva collected in the 
                    <italic toggle="yes">Michelia maudiae</italic> were sequenced. This method of sequencing the mitogenomes of exuviae of larva can give us the chance to monitor the conservation of rare butterflies.</p>
                <p>Ten mitogenomes of 
                    <italic toggle="yes">T. aureus</italic> showed typical gene arrangements and contained 13 protein-coding genes (PCGs), two ribosomal RNA genes (12S rRNA and 16S rRNA), 22 transfer RNA (tRNA) genes, and a non-coding control region (D-loop). The two haplotypes with one base different in 
                    <italic toggle="yes">T. aureus</italic> were found. We also conducted phylogenetic analyses including all different populations of 
                    <italic toggle="yes">T. aureus</italic> to assess the phylogenetic relationship of 
                    <italic toggle="yes">T. aureus.</italic> The lengths of the 12S rRNA and 16S rRNA genes from both haplotypes were 776 base pairs (bp) and 1,334 bp, respectively. The genetic distance of the ten samples was calculated as 0-0.000065 on the basis of the whole mitogenomes. 
                    <italic toggle="yes">T. aureus</italic> found in Taishun, Zhejiang province, China had a close phylogenetic relationship with the clade of 
                    <italic toggle="yes">T. aureus</italic> found in Pingshan, Jiangxi province, China, which was supported by neighbour-joining analysis.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Golden Kaiserihind</kwd>
                <kwd>Mitogenome</kwd>
                <kwd>Phylogeny</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1">
                    <funding-source>Zhejiang Normal University</funding-source>
                    <award-id>2022-013</award-id>
                </award-group>
                <funding-statement>This work was supported by the Key Lab of Wildlife Biotechnology, Conservation and Utilization of Zhejiang Province, Zhejiang Normal University (2022-013).</funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>Because of its beautiful appearance and relative rarity in China, 
                <italic toggle="yes">Teinopalpus aureus</italic> Mell, 1923 (Lepidoptera: Papilionidae) distributed in China, Vietnam and Laos is listed as a Class I species in China (
                <xref ref-type="bibr" rid="ref6">Morita 1998</xref>; 
                <xref ref-type="bibr" rid="ref5">Masui 1999</xref>; 
                <xref ref-type="bibr" rid="ref8">Xing 
                    <italic toggle="yes">et al.</italic> 2019</xref>; 
                <xref ref-type="bibr" rid="ref3">Huang 
                    <italic toggle="yes">et al.</italic> 2015</xref>), which is one of three highest classifications for protection of endangered insect species in China. If we can identify the larva of 
                <italic toggle="yes">T. aureus</italic> and obtain the mitochondrial genome using the exuviae of larva, we can determine its habitat sites and compare the genetic diversity of 
                <italic toggle="yes">T. aureus</italic> using non-damage sampling to protect it in the larva stage.</p>
            <p>No ethical approval was obtained for this study as we used wild exuviate gathered from the Wuyanling National Nature Reserve.</p>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>Methods</title>
            <p>Ten exuviae of larva of 
                <italic toggle="yes">T. aureus</italic> (No. ZJWYL20200601TP01- ZJWYL20200601TP10) were collected from wild host plants, 
                <italic toggle="yes">Michelia maudiae</italic>, in Zhejiang Wuyanling National Nature Reserve, Taishun, Zhejiang province, China and stored in 100% absolute ethyl alcohol in the Natural Museum of Wuyanling National Nature Reserve, China.</p>
            <p>A total of ten genomic DNAs from exuviae of larva (No. ZJWYL20200601TP01- ZJWYL20200601TP10) were extracted from partial exuviae using QIAGEN DNeasy Blood and Tissue Kit (QIAGEN, Valencia, CA) according to the manufacturer instructions, and stored at -20 &#x00b0;C refrigerator in 
                <ext-link ext-link-type="uri" xlink:href="http://www.zjysdw.cn/">Key Lab of Wildlife Biotechnology, Conservation and Utilization of Zhejiang Province</ext-link>.</p>
            <p>The mitochondrial genome was obtained by the Sanger method. Ten mt genomes were amplified by polymerase chain reaction (PCR) by using the normal primers (
                <xref ref-type="bibr" rid="ref12">Zhang 
                    <italic toggle="yes">et al.</italic> 2018</xref>; 
                <xref ref-type="bibr" rid="ref1">Guan 
                    <italic toggle="yes">et al.</italic> 2021</xref>; 
                <xref ref-type="bibr" rid="ref9">Xu 
                    <italic toggle="yes">et al.</italic> 2021</xref>; 
                <xref ref-type="bibr" rid="ref10">Yu 
                    <italic toggle="yes">et al.</italic> 2021</xref>) and six specific primers according to the reported mitochondrial genomes of 
                <italic toggle="yes">T. aureus</italic> (
                <xref ref-type="bibr" rid="ref3">Huang 
                    <italic toggle="yes">et al.</italic> 2015</xref>). This study used both normal polymerase chain reaction (PCR) and long-and-accurate PCR (LA PCR) methods with Takara Taq or Takara LA Taq DNA polymerase (Takara, Dalian, China). Normal PCR (or Long PCR) was performed in a 50 &#x03bc;L reaction mixture consisting of 32.5 &#x03bc;L (or 26.5 &#x03bc;L) of sterilized distilled water; 5 &#x03bc;L MgCl
                <sub>2</sub>, 25 mM; 5 &#x03bc;L 10 &#x00d7; PCR Buffer (or 5 &#x03bc;L 10 &#x00d7; LA PCR Buffer); 4 &#x03bc;L (or 8 &#x03bc;L) dNTP, 2.5 mM; 1 &#x03bc;L (or 2 &#x03bc;L) of each primer, 5 &#x03bc;mol; 1 &#x03bc;L DNA template; 0.5 &#x03bc;L Takara Taq enzyme (or Takara LA Taq enzyme) DNA polymerase (Takara Biomedical, Japan). Fragments were amplified using Takara Taq enzyme 
                <italic toggle="yes">via</italic> normal PCR or Takara LA Tag enzyme: initial denaturation for 3 min at 95 &#x00b0;C, followed by 35 cycles of 40 s at 95 &#x00b0;C, 1 min or 3 min at 46&#x2013;58 &#x00b0;C, and 50&#x2013;90 s at 72 &#x00b0;C, and a subsequent 10 min final extension step at 72 &#x00b0;C. All PCR reactions were used in Applied Biosystems Veriti instrument (Singapore). PCR products were purified using the Axygen agarose-out kit (Axygen, Hangzhou, China), and sequenced using ABI 3730 system by primer walking with two-directions.</p>
            <p>To further discuss the phylogenetic relationship of 
                <italic toggle="yes">T. aureus</italic> found in Zhejiang Wuyanling National Nature Reserve, a total of 13 mitogenomes were analyzed, including 11 mt genomes of 
                <italic toggle="yes">T. aureus</italic> downloaded from NCBI (
                <xref ref-type="bibr" rid="ref7">Qin 
                    <italic toggle="yes">et al.</italic> 2012</xref>; 
                <xref ref-type="bibr" rid="ref3">Huang 
                    <italic toggle="yes">et al.</italic> 2015</xref>; 
                <xref ref-type="bibr" rid="ref11">Zou 
                    <italic toggle="yes">et al.</italic> 2021</xref>) and two mt genomes of 
                <italic toggle="yes">T. imperialis</italic> (
                <xref ref-type="bibr" rid="ref2">Huang 
                    <italic toggle="yes">et al.</italic> 2016</xref>) as outgroups (
                <xref ref-type="fig" rid="f1">Figure 1</xref>). To align the all complete mt genomes, we used Clustal W in Mega 7.0 (
                <xref ref-type="bibr" rid="ref4">Kumar 
                    <italic toggle="yes">et al.</italic> 2016</xref>). We constructed a Neighbour-Joining phylogenetic tree with the parameters as below: bootstrap replications (1000), substitution model (Kimura 2-parameter model), Rates among sites (Gamma distributed), other parameters used default parameters.</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Phylogenetic tree of the relationships among 11 mt genomes of 
                        <italic toggle="yes">Teinopalpus aureus</italic> and two mt genomes of 
                        <italic toggle="yes">Teinopalpus imperialis</italic> based on the whole complete mitochondrial genomes.</title>
                    <p>Numbers around the nodes are the the bootstrap values of NJ. The GenBank numbers and the abbreviations of location information of all species are shown in the figure. JXPS: Pingshan, Jiangxi province; ZJMHS: Meihuashan, Zhejiang province; WYL: Wuyanling, Zhejiang province; JXJLS: Jiulianshan, Jiangxi province; GXDYS: Dayaoshan, Guangxi Zhuang Autonomous Region; WZ: Zhuang Autonomous Region.</p>
                </caption>
                <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/133868/03cefb84-df12-47fb-b6c2-17443546cf02_figure1.gif"/>
            </fig>
        </sec>
        <sec id="sec3" sec-type="results">
            <title>Results</title>
            <p>The two haplotypes with one base different in control region were found. The two obtained whole mt genome haplotypes were deposited in the 
                <ext-link ext-link-type="uri" xlink:href="http://www.baidu.com/link?url=k3t2uqINtkmwJ9OT0VtGq9RVkbq9C0SjxpefCYFvlV7OkGLjR46GcDsE7kY3jUg2">National Center for Biotechnology Information</ext-link> with accession numbers 
                <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/nuccore/OL449691">OL449691</ext-link> and 
                <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/nuccore/OL449692">OL449692</ext-link>.</p>
            <p>The two mt genome haplotypes of 
                <italic toggle="yes">T. aureus</italic> in majority-strand was 15,243 base pairs (bp) in length with negative AT-skew and GC-skew, which were -0.0025 and -0.2376, respectively, which showed typical lepidopterous gene structure and contained 13 protein-coding genes (PCGs), two ribosomal RNA genes (12S rRNA and 16S rRNA), 22 transfer RNA (tRNA) genes, and one control region (D-loop). One base T replaced C in control region between two haplotypes was found. The start codons of PCGs were ATG (in COX2, COX3, ATP6, ATP8, ND1, ND4, ND4L, and Cytb), ATT (in ND2, ND3, ND5, and ND6), and CGA (in COX1). The stop codons of PCGs were TAA (in ND2, ATP6, ATP8, COX3, ND1, ND5, ND6, and Cytb), TAG (in ND4L), and the incomplete stop codon T- (in COX1, COX2, ND3, and ND4). The gene arrangement was identical to the reported mt genome of 
                <italic toggle="yes">T. aureus wuyiensis</italic> from Lee (
                <xref ref-type="bibr" rid="ref11">Zou 
                    <italic toggle="yes">et al.</italic> 2021</xref>). The overall nucleotide composition of A, T, C and G in majority-strand was 39.8%, 40.0%, 12.5%, 7.7%, respectively. The lengths of the 12S rRNA and 16S rRNA genes from two haplotypes were 776 bp and 1,334 bp, respectively. The genetic distance of between two haplotypes and other reported population of 
                <italic toggle="yes">T. aureus</italic> based on Kimura 2-parameter model was calculated as 0.00007-0.01013 on the basis of the whole mitogenomes. According to genetic distance, we can identify that ten exuviae of larva is belonging to the exuviae from 
                <italic toggle="yes">T. aureus.</italic> This method using the exuviae to identify species can help us to monitor and protect 
                <italic toggle="yes">T. aureus.</italic>
            </p>
            <p>In NJ tree, two haplotypes from Taishun, Zhejiang province and the sample from Wuyishan, Fujian province were formed one clade 1. Then this clade is closed to the clade 2 from Pingshan and Meihuashan. Clade 1 and clade 2 are sister clade to the clade 3 from Jiulianshan and Dayaoshan. The clade 4 is sister clade to other clade and formed the phylogenetic relationship of (Clade 4 + (Clade 3 + (Clade 1+ Clade 2).</p>
            <p>In this study, the monophyly of 
                <italic toggle="yes">T. aureus</italic> was well supported. The samples collected in Taishun, Zhejiang province can be identified as 
                <italic toggle="yes">T. aureus wuyiensis</italic> because the genetic distance is below 0.00013 and the phylogenetic relationship of the samples collected in Taishun are clustered together with 
                <italic toggle="yes">T. aureus wuyiensis.</italic> The new mitochondrial genomes obtained from the exuviae of larva of 
                <italic toggle="yes">T. aureus</italic> can give us a further understanding of phylogenetic relationships of 
                <italic toggle="yes">T. aureus</italic> to protect it.</p>
        </sec>
        <sec id="sec4">
            <title>Author contributions</title>
            <p>All authors were involved in the conception and design, or analysis and interpretation of the data; LL Liu, LH Zhang, GH Weng, WQ Wang, and SS Zhang were involved in the drafting of the paper; all authors were involved in revising it critically for intellectual content; and all authors were involved in the final approval of the version to be published; and that all authors agree to be accountable for all aspects of the work.</p>
        </sec>
    </body>
    <back>
        <sec id="sec7" sec-type="data-availability">
            <title>Data availability</title>
            <sec id="sec8">
                <title>Source data</title>
                <p>The mitochondrial genome data that support the findings of this study are openly available in GenBank of NCBI at [
                    <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/nuccore/OL449691">https://www.ncbi.nlm.nih.gov/nuccore/OL449691</ext-link> and 
                    <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/nuccore/OL449692">https://www.ncbi.nlm.nih.gov/nuccore/OL449692</ext-link>] under the accession no. OL449691 and OL449692. The mt genome was obtained by the Sanger method, so no associated &#x201c;BioProject&#x201d;, &#x201c;SRA&#x201d; and &#x201c;Bio-Sample&#x201d; numbers should be shown.</p>
            </sec>
        </sec>
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    </back>
    <sub-article article-type="reviewer-report" id="report163936">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.133868.r163936</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Li</surname>
                        <given-names>Xue-yan</given-names>
                    </name>
                    <xref ref-type="aff" rid="r163936a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r163936a1">
                    <label>1</label>State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>27</day>
                <month>3</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Li Xy</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport163936" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.121947.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This manuscript investigated a method to use exuviae of butterfly larva for species identification, which is useful especially for protected species. Nevertheless, the authors should describe more details of methods and explain some following points.</p>
            <p> </p>
            <p> 1. What does 'Class I species in China' mean?</p>
            <p> </p>
            <p> 2. The authors got ten mt genomes of 
                <italic>T. aureus</italic> by the Sanger methods. Are all these sequences submitted to a public database? GenBank or other database?</p>
            <p> </p>
            <p> 3. Figure 1 include 11 mt genomes of 
                <italic>Teinopalpus aureus</italic> and two mt genomes of 
                <italic>Teinopalpus imperialis</italic>. For 11 mt genomes of 
                <italic>Teinopalpus aureus</italic>, which one(s) are from this study? Which ones from published database? The authors said &#x201c;including 11 mt genomes of 
                <italic>T. aureus </italic>downloaded from NCBI&#x201d;, please make the figure legend to be readable by itself.</p>
            <p>Are the datasets clearly presented in a usable and accessible format, and the assembly and annotation available in an appropriate subject-specific repository?</p>
            <p>Partly</p>
            <p>Are sufficient details of the sequencing and extraction, software used, and materials provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Are the rationale for sequencing the genome and the species significance clearly described?</p>
            <p>Partly</p>
            <p>Are the protocols appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Insect genome</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report156619">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.133868.r156619</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Kim</surname>
                        <given-names>Chang-Bae</given-names>
                    </name>
                    <xref ref-type="aff" rid="r156619a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r156619a1">
                    <label>1</label>Department of Biotechnology, Sangmyung University, Seoul, South Korea</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>9</day>
                <month>12</month>
                <year>2022</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Kim CB</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport156619" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.121947.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The manuscript sequenced and analyzed the complete mitogenomes for identification of the exuviae of larva from 
                <italic>Teinopalpus aureus</italic>. However, the authors did not explain why mitogenomes are necessary for this aim.</p>
            <p> </p>
            <p> In the manuscript, the authors focus on describing mitogenome structure but this work was done 10 years ago by Qin 
                <italic>et al.</italic> (2012): &#x201c;Complete mitochondrial genome of the 
                <italic>Teinopalpus aureus guangxiensis</italic> (Lepidoptera: Papilionidae) and related phylogenetic analyses&#x201d;
                <sup>
                    <xref ref-type="bibr" rid="rep-ref-156619-1">1</xref>
                </sup> and some following studies, compare your data to previous studies.</p>
            <p> </p>
            <p> Moreover, all 10 samples for analyses in this study were collected in one region so there was almost no variation among mitogenome sequences. The authors describe these limitations and further studies.</p>
            <p>Are the datasets clearly presented in a usable and accessible format, and the assembly and annotation available in an appropriate subject-specific repository?</p>
            <p>Yes</p>
            <p>Are sufficient details of the sequencing and extraction, software used, and materials provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Are the rationale for sequencing the genome and the species significance clearly described?</p>
            <p>No</p>
            <p>Are the protocols appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Genomics and bioinformatics</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <back>
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</article>
