<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="methods-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.73390.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Method Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Vessel masking and Hough transform for optic disc localisation from retinal images</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved with reservations, 1 not approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Ali</surname>
                        <given-names>Aziah</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1597-5065</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Wan Zaki</surname>
                        <given-names>Wan Mimi Diyana</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-5808-4348</uri>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Hussain</surname>
                        <given-names>Aini</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Hashim</surname>
                        <given-names>Noramiza</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-9838-2892</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Mohd Isa</surname>
                        <given-names>Wan Noorshahida</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Faculty of Computing &amp; Informatics, Multimedia University, Cyberjaya, Selangor, 63100, Malaysia</aff>
                <aff id="a2">
                    <label>2</label>Faculty of Engineering &amp; Built Environment, Universiti Kebangsaan Malaysia, Bangi, Selangor, 43600, Malaysia</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:aziah.ali@mmu.edu.my">aziah.ali@mmu.edu.my</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>14</day>
                <month>2</month>
                <year>2022</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2022</year>
            </pub-date>
            <volume>11</volume>
            <elocation-id>181</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>16</day>
                    <month>11</month>
                    <year>2021</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Ali A et al.</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/11-181/pdf"/>
            <abstract>
                <p>
                    <bold>Background</bold>: Retinal images can be considered as one of the reliable indicators for symptoms of many ocular diseases such as diabetic retinopathy, macular degeneration and glaucoma. By analysing and tracking changes of important structures on a retinal image, symptoms of ocular diseases can be detected in a timely manner which helps physicians plan early treatment for better disease control. One of the important landmarks on a retinal image is the optic disc (OD), which must be localised to estimate retinal vessel parameters such as vessel width and tortuosity. This paper proposes a method for automatic OD localisation from a retinal image.</p>
                <p>
                    <bold>Methods:</bold> A retinal image is first pre-processed and thresholded to produce a binary image that highlights most retinal vessels on the image. Next, a discrete cosine transform-based smoothing method is employed to replace the detected vessel pixel values on the pre-processed image with values closer to the surrounding neighbour pixel values, effectively masking most vessels on the image. Hough transform is then applied to the vessel-masked image to detect the circle representing the OD on the image, producing the estimated location of the OD center and its estimated diameter.</p>
                <p>
                    <bold>Results:</bold> Applying the proposed method to three different public databases, namely Digital Retinal Images for Vessel Extraction (DRIVE), High-Resolution Fundus (HRF) and Methods to Evaluate Segmentation and Indexing Techniques in the field of Retinal Ophthalmology (MESSIDOR) resulted in an overall detection rate of 99.53%.</p>
                <p>
                    <bold>Conclusions:</bold> The achieved performance by the proposed method is superior to many published methods of OD localization, with a processing time of less than one second for each image. While this has only been validated on one type of retinal images, future investigations may include validation on other types such as angiograms or scanning laser ophthalmoscopy.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Optic disc localisation</kwd>
                <kwd>fundus image</kwd>
                <kwd>vessel masking</kwd>
                <kwd>Hough transform</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1" xlink:href="http://dx.doi.org/10.13039/501100003093">
                    <funding-source>Ministry of Higher Education, Malaysia</funding-source>
                    <award-id>FRGS/1/2020/TK0/MMU/03/15</award-id>
                </award-group>
                <funding-statement>This work was supported in part by the research grant from Ministry of Higher Education, Malaysia with Grant no. FRGS/1/2020/TK0/MMU/03/15.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>Retinal image analysis can be very helpful in providing insights into patients&#x2019; ocular health. By analysing the retinal image, ophthalmologists can detect various symptoms of ocular diseases, which may help to ensure timely treatment of the diseases, thus ultimately decreasing the risk of patients going totally blind. Most hospitals are now equipped with modern fundus cameras that image the patient&#x2019;s fundus to produce a retinal image. 
                <xref ref-type="fig" rid="f1">Figure 1</xref> shows a sample of a fundus image. Nerves from the retina converge to form a round or oval optic disc (OD) that sends a focused image onto the retina, in the form of electrical impulses to the part of the brain responsible for visual function. The central part of the retina, known as the macula, is responsible for an important part of the central vision system, while the fovea is the point in the middle of the macula.</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>A sample of a fundus image with important landmarks labeled.</title>
                </caption>
                <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/77038/ff63da48-53e6-428a-83c0-44fecfda18e9_figure1.gif"/>
            </fig>
            <p>With routine retinal screening in place, a huge number of fundus images will need to be analysed daily. This scenario has resulted in a lot of research being conducted on the automatic analysis of fundus images to assist ophthalmologists in efficiently and accurately performing retinal diagnoses.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> These studies aim to extract important parameters from a fundus image, mostly related to the important landmarks, including the OD, retinal blood vessels, fovea, macula, and any associated anomalies.</p>
            <p>A topic of interest regarding fundus image analysis is the automatic localisation of the OD from a fundus image. By detecting the OD, parameters such as its position and radius could be used to estimate other parameters such as vessel width or tortuosity. Normally, when measuring for these parameters from a fundus image, to be considered for parameter calculation the vessels are to be of certain distance close to the OD.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> OD detection would also allow for identification of the eye side from which the image is taken, whether right eye or left eye.</p>
            <p>A number of studies have been dedicated to automatically detecting the OD on the fundus image,
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> while others have also attempted at providing a more accurate boundary of the detected OD.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> The methods used include circular transformation,
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> directional local contrast,
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> probability models,
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> automatic thresholding
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> and deep learning.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup>
            </p>
            <p>Thresholding works in locating the OD in fundus images with high-intensity differences between the OD region and other parts of the image.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup> When dealing with images containing an OD with low contrast against the retinal background or images with pathologies, the thresholding method may fail to detect the OD.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> A set of points is used to describe the OD boundary by minimising the energy function in active contour-based methods for OD detection.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> While this method may work well, its performance is very much dependent on the initial seed points for the contour model. There is also the risk of being trapped in a local maximum when searching for the OD boundary, especially with images containing pathologies. Extensive review of existing OD segmentation methods can be found in the review literature.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup>
            </p>
            <p>OD localisation focuses more on locating the position of OD center on the fundus image, which is different from the focus of the OD segmentation procedure. In OD segmentation, the general aim is to identify every pixel that belongs to the OD on the fundus. In most applications, OD localisation precedes the OD segmentation step; hence it is important to have an accurate estimate of the OD center through OD localisation to ensure a successful OD segmentation procedure. Since the OD is usually a bright disc-shaped area on the fundus image, some researchers have investigated the use of the Hough transform technique to detect the shape and thus estimate the center of the OD.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref27">27</xref>
                </sup> Many researchers employ methods to remove vessel structures from the fundus image, or use vessel masking, to further highlight the OD structure, such as inpainting
                <sup>
                    <xref ref-type="bibr" rid="ref28">28</xref>
                </sup> and median filtering.
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup> Combining Hough transform with vessel masking can be a potential method to efficiently localise the OD in a fundus image, instead of using the methods separately.
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref28">28</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>Methods</title>
            <p>A method inspired by combining existing efficient OD localisation methods, namely thresholding, vessel masking and Hough transform, is proposed to localise the OD centre's position from a fundus image.</p>
            <p>The proposed OD localisation method takes a color fundus image as the input. Firstly, the green channel image is extracted from the color image as part of pre-processing. Next, the green channel image is padded around the original region of interest (ROI - the circular non-black area), with additional pixels matching the pixel values along the border. This pre-processing step is similar to Soares&#x2019; proposed method
                <sup>
                    <xref ref-type="bibr" rid="ref29">29</xref>
                </sup> for retinal vessel segmentation, except that the number of iterations for ROI padding is increased to 50 instead of 20. This step helps to minimise the contrast between the ROI and background further so it would not be falsely detected as the OD centre in the following step. The pre-processed image is then resized to a standardised smaller size for faster computation and is converted to a binary image using a global thresholding method, called Otsu&#x2019;s method. The binary image will highlight most vessel structures in the pre-processed fundus image in white pixels, while the retinal background is in black pixels. This method is implemented using the 
                <ext-link ext-link-type="uri" xlink:href="https://ch.mathworks.com/products/matlab.html">Matlab</ext-link> software, which can potentially be translated into 
                <ext-link ext-link-type="uri" xlink:href="https://www.scilab.org/about/scilab-open-source-software">SCILAB</ext-link> as an open-source alternative.</p>
            <p>Next, using the vessel pixel information from the binary image, a discrete cosine transform-based smoothing method is employed on the pre-processed image to replace all the vessel pixel values with values closer to the surrounding neighbours. This vessel masking step will effectively remove most of the vessel structures from the image, resulting in a vessel-masked image. The Hough transform is then applied to detect the circle representing the OD on the image. Once the circle has been detected, the OD centre and the radius can then be estimated to be used in the estimation of important retinal parameters such as cup-to-disc ratio, tortuosity and calibre of the retinal vessels.</p>
            <p>
                <xref ref-type="fig" rid="f2">Figure 2</xref> depicts all steps involved in OD localisation from a fundus image and their corresponding sample output images.</p>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Overview of the steps for proposed optic disc localization method from a fundus image (OD = optic disc).</title>
                </caption>
                <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/77038/ff63da48-53e6-428a-83c0-44fecfda18e9_figure2.gif"/>
            </fig>
            <p>For validation, it is not necessary for the fundus images to have ground truth vessel segmentation images. In a number of previous studies on OD localisation, a database called Methods to Evaluate Segmentation and Indexing Techniques in the field of Retinal Ophthalmology (MESSIDOR) is used for validation.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref30">30</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref31">31</xref>
                </sup> The MESSIDOR database
                <sup>
                    <xref ref-type="bibr" rid="ref32">32</xref>
                </sup> consists of 1200 fundus images captured using a Topcon TRC NW6 non-mydriatic fundus camera with 45 degrees of field of viev (FOV). In this study, the OD&#x2019;s centre position and radius are estimated on all 40 images from Digital Retinal Images for Vessel Extraction (DRIVE),
                <sup>
                    <xref ref-type="bibr" rid="ref33">33</xref>
                </sup> 45 images from High-Resolution Fundus (HRF),
                <sup>
                    <xref ref-type="bibr" rid="ref34">34</xref>
                </sup> and 1200 images from MESSIDOR, which are all publicly available fundus image databases. The images from another popular benchmark fundus image database, the STructured Analysis of the Retina (STARE) database, are excluded in this evaluation since most of its images do not contain OD. Even for those with the OD in the ROI, the OD is only partially visible.</p>
        </sec>
        <sec id="sec3" sec-type="results|discussion">
            <title>Results &amp; discussion</title>
            <p>
                <xref ref-type="table" rid="T1">Table 1</xref> shows sample output images for the main steps in the proposed OD localisation method for the DRIVE, HRF and HUKM databases. The OD-localised image output includes a &#x201c;+&#x201d; sign to indicate the estimated OD centre and the green circle denotes the estimated OD radius. 
                <xref ref-type="fig" rid="f3">Figure 3</xref> shows zoomed-in images of the OD localisation output from HRF images. It can be seen that the proposed method managed to accurately detect the centre and the radius of the OD, regardless of whether the fundus image contains a clean (normal) or noisy (with pathologies) retinal background.</p>
            <table-wrap id="T1" orientation="portrait" position="float">
                <label>Table 1. </label>
                <caption>
                    <title>Sample outputs of optic disc (OD) localization steps applied to fundus images from the Digital Retinal Images for Vessel Extraction (DRIVE), High-Resolution Fundus (HRF) and Methods to Evaluate Segmentation and Indexing Techniques in the field of Retinal Ophthalmology (MESSIDOR) databases.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <tbody>
                        <tr>
                            <td colspan="1" rowspan="1">
                                <inline-graphic xlink:href="graphic1.gif"/>
                            </td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <title>Samples of zoomed-in optic disc localisation output on randomly selected images from HRF.</title>
                </caption>
                <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/77038/ff63da48-53e6-428a-83c0-44fecfda18e9_figure3.gif"/>
            </fig>
            <p>Following the previous researchers&#x2019; method of assessing the OD localisation performance, a method is considered to have successful OD localisation when the estimated location of OD center is within the circumference of the OD itself.
                <sup>
                    <xref ref-type="bibr" rid="ref31">31</xref>
                </sup> The proposed OD localisation method achieves a 100% correct detection rate for all images in DRIVE and HRF. For the larger MESSIDOR database, only six images out of 1200 images result in either wrong detection or non-detection of the OD, hence 99.5% successful rate. These results are summarised in 
                <xref ref-type="table" rid="T2">Table 2</xref> below.</p>
            <table-wrap id="T2" orientation="portrait" position="float">
                <label>Table 2. </label>
                <caption>
                    <title>Result of optic disc localization in four databases (Digital Retinal Images for Vessel Extraction [DRIVE], High-Resolution Fundus [HRF], and Methods to Evaluate Segmentation and Indexing Techniques in the field of Retinal Ophthalmology [MESSIDOR]).</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Database</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Number of images</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Correct output</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">False output</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Detection rate (%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">DRIVE</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">40</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">40</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">100</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">HRF</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">45</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">45</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">100</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1200</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1194</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">99.50</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">All</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1285</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1279</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">99.53</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>
                <xref ref-type="table" rid="T3">Table 3</xref> shows the performance comparison of the proposed method against published methods in the literature. The proposed method outperforms all considered methods except for Yu&#x2019;s method that achieved 99.67% detection rate. On average, this translates to a 99.53% detection rate for all the validated databases. The processing time for OD localisation is less than one second for every image tested, regardless of the original image resolution. Shorter processing time is achieved because the proposed method employs image resizing, however this does not compromise the detection rate. This method is efficient and accurate for practical application of OD localisation in clinical settings.</p>
            <table-wrap id="T3" orientation="portrait" position="float">
                <label>Table 3. </label>
                <caption>
                    <title>Comparison of optic disc localization results against published methods (DRIVE = Digital Retinal Images for Vessel Extraction, HRF = High-Resolution Fundus, MESSIDOR = Methods to Evaluate Segmentation and Indexing Techniques in the field of Retinal Ophthalmology).</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Author</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Database</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Detection rate (%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="3" valign="middle">Proposed</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">DRIVE</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>100</bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">HRF</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>100</bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">99.50</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Aquino 
                                <italic toggle="yes">et al</italic>.
                                <sup>
                                    <xref ref-type="bibr" rid="ref9">9</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">99.00</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Lu
                                <sup>
                                    <xref ref-type="bibr" rid="ref11">11</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">98.77</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Yu 
                                <italic toggle="yes">et al</italic>.
                                <sup>
                                    <xref ref-type="bibr" rid="ref31">31</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>99.67</bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="middle">Salih 
                                <italic toggle="yes">et al</italic>.
                                <sup>
                                    <xref ref-type="bibr" rid="ref30">30</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">DRIVE</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>100</bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">98.91</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="middle">Gui 
                                <italic toggle="yes">et al</italic>.
                                <sup>
                                    <xref ref-type="bibr" rid="ref5">5</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">DRIVE</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>100</bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">99.25</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="3" valign="middle">Dietter 
                                <italic toggle="yes">et al</italic>.
                                <sup>
                                    <xref ref-type="bibr" rid="ref4">4</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">DRIVE</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">100</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">HRF</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>100</bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MESSIDOR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">98.91</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
        </sec>
        <sec id="sec4" sec-type="conclusion">
            <title>Conclusion</title>
            <p>In this paper, we have proposed an efficient method for localising the OD in a fundus image. The method involves the use of vessel masking to remove vessel structures from the image and Hough transform to locate the circular object on the vessel-masked image, which is the OD. The output will be in the form of the coordinates of the OD center together with the estimated radius of the OD, which can also be visualised on the fundus image. Validation of the proposed method on three different public databases, namely DRIVE, HRF and MESSIDOR resulted in an overall detection rate of 99.53%. The achieved performance is superior to many published methods available, with a much-reduced processing time of less than one second for each image. The proposed method has only been validated on one type of retinal image, which is a fundus image produced by a fundus camera. In the future, retinal images using other imaging modalities such as angiogram or scanning laser ophthalmoscopy can further validate the proposed optic disc localisation. Another interesting direction for future research is accurate segmentation of the OD boundary for more accurate parameter estimation. The output of the method may prove to be useful for diagnosing ocular diseases, which relate to parameters such as cup-to-disc ratio and vessel width parameters. Automating the step for OD localisation can help develop a fully automated computer-assisted retinal diagnosis system in the future.</p>
        </sec>
        <sec id="sec5">
            <title>Data availability</title>
            <sec id="sec6">
                <title>Source data</title>
                <p>The DRIVE database can be accessed at 
                    <ext-link ext-link-type="uri" xlink:href="https://drive.grand-challenge.org/">https://drive.grand-challenge.org/</ext-link>, HRF at 
                    <ext-link ext-link-type="uri" xlink:href="https://www5.cs.fau.de/research/data/fundus-images/">https://www5.cs.fau.de/research/data/fundus-images/</ext-link> and MESSIDOR at 
                    <ext-link ext-link-type="uri" xlink:href="https://www.adcis.net/en/third-party/messidor/">https://www.adcis.net/en/third-party/messidor/</ext-link>.</p>
            </sec>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments</title>
            <p>We would like to thank our collaborators from the Department of Ophthalmology, Universiti Kebangsaan Malaysia Medical Center, especially Dr Wan Haslina and her team for their valuable inputs for this study.</p>
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    <sub-article article-type="reviewer-report" id="report150516">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.77038.r150516</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Calisto</surname>
                        <given-names>Francisco Maria</given-names>
                    </name>
                    <xref ref-type="aff" rid="r150516a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8179-7872</uri>
                </contrib>
                <aff id="r150516a1">
                    <label>1</label>Institute for Systems and Robotics (ISR/IST), Instituto Superior T&#x00e9;cnico (IST), University of Lisbon, Lisbon, Portugal</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>16</day>
                <month>11</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Calisto FM</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport150516" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.73390.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>In this manuscript, the authors are proposing an efficient method for localizing the optic disc in a fundus image. Their method involves the use of vessel masking to remove vessel structures from the image. Additionally, the authors applied the Hough transform method to locate the circular object on the vessel-masked image, which is the optic disc. The authors validated properly the proposed method on three different public databases, namely DRIVE, HRF and MESSIDOR resulted in an overall detection rate of 99.53%. In the end, they demonstrate that the achieved performance is superior to many published methods available, with a much-reduced processing time of less than one second for each image. Another interesting direction that the authors were discussing, is the potential to promote an accurate segmentation of the optic disc boundary for more accurate parameter estimation. This represents an exciting achievement. Not only, the authors are demonstrating good results with the proposed method, but also are showing promising directions of the work.</p>
            <p> </p>
            <p> The submitted manuscript, under revision, is well and clearly structured. The introduction of the work gives a short brief of the domain problem, while the background describes that both domain problem and scientific community can benefit from the procedure itself obtained by the provided methods [1, 5, 8]. Previous literature gives an overview of the related work to the resolution enhancement and its influence on the technique performance [3, 7, 9].</p>
            <p> </p>
            <p> Proposed methods are giving enough details to the concern resolution, while presenting several methods, including the Hough transform. It also describes the approaches used for the analysis. However, it could also be interesting to discuss how clinical adoption is working with these new set of methods [2], as well as how can the authors apply these methods to other clinical domains [4, 6].</p>
            <p> </p>
            <p> As a main opinion, this manuscript gives a good presentation of the contribution impact on the domain tasks. Authors are presenting their sampling technique, stating its novelty. The mentioned existing methods are well referenced in the manuscript.</p>
            <p> </p>
            <p> The proposed method is clearly described, and the manuscript is well organized. The method description should be clear for readers with technical background. All the detailed in depth information are provided and described with support of results. Validation procedure of the proposed methods are satisfactory.</p>
            <p> </p>
            <p> Finally, it would be interesting to see similar analysis for the proposed methods. In summary, the manuscript shows an exciting work and can be recommended for publication.</p>
            <p>Is the rationale for developing the new method (or application) clearly explained?</p>
            <p>Yes</p>
            <p>Is the description of the method technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions about the method and its performance adequately supported by the findings presented in the article?</p>
            <p>Yes</p>
            <p>If any results are presented, are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Are sufficient details provided to allow replication of the method development and its use by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Human-Computer Interaction, Health Informatics, Artificial Intelligence</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <back>
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        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.77038.r123841</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Khan</surname>
                        <given-names>Khan Bahadar</given-names>
                    </name>
                    <xref ref-type="aff" rid="r123841a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1409-7571</uri>
                </contrib>
                <aff id="r123841a1">
                    <label>1</label>Department of Telecommunication Engineering, Faculty of Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>16</day>
                <month>11</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Khan KB</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport123841" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.73390.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>reject</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>Following are some suggestions to improve the current work: 
                <list list-type="order">
                    <list-item>
                        <p>This paper is an application-based technical paper, which adopts a well-known method. However, it is short of novelty.</p>
                    </list-item>
                    <list-item>
                        <p>In section 1 (Introduction), it&#x2019;s better to clarify the whole structure of the paper, which can be easier for the reader to understand what scenarios have been investigated or examined and what&#x2019;s the main contribution this paper makes should be highlighted in bullet form for the ease of the readers. For example, this paper is organized as follows: section 2 presents what and section 3 presents what&#x2026; It&#x2019;s suggested to give a brief overview of the entire paper in the introduction.</p>
                    </list-item>
                    <list-item>
                        <p>The authors are advised to refer to more datasets or some newer fundus datasets. The authors must consider the clinical images and the results must be evaluated by the physicians. The following latest databases are available (Samiksha 
                            <italic>et al. </italic>2020; Muhammed 
                            <italic>et al.&#x00a0;</italic>2006, and Ce 
                            <italic>et al.&#x00a0;</italic>2021).
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-123841-1">1</xref>
                            </sup> 
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-123841-2">2</xref>
                            </sup> 
                            <sup>
                                <xref ref-type="bibr" rid="rep-ref-123841-3">3</xref>
                            </sup>
                        </p>
                    </list-item>
                    <list-item>
                        <p>In the related work, the authors have described several previous methods for the problem. They could explain how their work differs from or improves existing methods.</p>
                    </list-item>
                    <list-item>
                        <p>It would be better to compare the obtained results with existing state-of-the-art techniques for better judgment of the proposed approach.</p>
                    </list-item>
                    <list-item>
                        <p>Please add the discussion section separately. The discussion section is always important while making a comparison of the findings with previous studies. Therefore, it is needed to compare the results of the study with existing literature. Are the findings being in line with the literature? If it is not inline then why the findings are apposite to the literature? This needs to be addressed.</p>
                    </list-item>
                    <list-item>
                        <p>There are some minor comments about the paper. There are still some errors and typos in the paper. Your submission requires extensive editing for English grammar and usage. Please have your manuscript copy-edited by a professional copy-editing service. The format of all references should be uniform and all references should be correctly listed.</p>
                    </list-item>
                </list>
            </p>
            <p>Is the rationale for developing the new method (or application) clearly explained?</p>
            <p>Partly</p>
            <p>Is the description of the method technically sound?</p>
            <p>No</p>
            <p>Are the conclusions about the method and its performance adequately supported by the findings presented in the article?</p>
            <p>Partly</p>
            <p>If any results are presented, are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>No source data required</p>
            <p>Are sufficient details provided to allow replication of the method development and its use by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Retinal Vessel segmentation, Biomedical Image Processing</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to state that I do not consider it to be of an acceptable scientific standard, for reasons outlined above.</p>
        </body>
        <back>
            <ref-list>
                <title>References</title>
                <ref id="rep-ref-123841-1">
                    <label>1</label>
                    <mixed-citation>
                        <person-group person-group-type="author"/>:
                        <article-title>RETINAL FUNDUS MULTI-DISEASE IMAGE DATASET (RFMID)</article-title>.
                        <source>
                            <italic>IEEE Dataport</italic>
                        </source>.<year>2020</year>;
                        <elocation-id>10.21227/s3g7-st65</elocation-id>
                        <pub-id pub-id-type="doi">10.21227/s3g7-st65</pub-id>
                    </mixed-citation>
                </ref>
                <ref id="rep-ref-123841-2">
                    <label>2</label>
                    <mixed-citation>
                        <person-group person-group-type="author"/>:
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                            <italic>preprint</italic>
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                        <ext-link ext-link-type="uri" xlink:href="https://arxiv.org/pdf/2006.09158.pdf">Reference source</ext-link>
                    </mixed-citation>
                </ref>
                <ref id="rep-ref-123841-3">
                    <label>3</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Automatic detection of 39 fundus diseases and conditions in retinal photographs using deep neural networks</article-title>.
                        <source>
                            <italic>Nature Communications</italic>
                        </source>.<year>2021</year>;<volume>12</volume>(<issue>1</issue>) :
                        <elocation-id>10.1038/s41467-021-25138-w</elocation-id>
                        <pub-id pub-id-type="doi">10.1038/s41467-021-25138-w</pub-id>
                    </mixed-citation>
                </ref>
            </ref-list>
        </back>
    </sub-article>
</article>
