<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.109968.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Typhoid diagnosis and associated prevailing drug resistance in Mbale city, Uganda</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>GIDUDU</surname>
                        <given-names>SAMUEL</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9782-7826</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Nakavuma</surname>
                        <given-names>Jesca</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Muhanguzi</surname>
                        <given-names>Dennis</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Mutebi</surname>
                        <given-names>Francis</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Itabangi</surname>
                        <given-names>Herbert</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Iramiot</surname>
                        <given-names>Jacob</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9239-6641</uri>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Biomolecular Resources and Biolaboratory Sciences; School of Biosecurity; Biotechnical and Laboratory Science; College of Veterinary Medicine Animal Resources and Biosecurity, Makerere University, Kampala, Uganda</aff>
                <aff id="a2">
                    <label>2</label>Department of Microbiology and Immunology, Faculty of Health Sciences, Busitema University, Mbale, Uganda</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:gidudusam@gmail.com">gidudusam@gmail.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>17</day>
                <month>3</month>
                <year>2022</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2022</year>
            </pub-date>
            <volume>11</volume>
            <elocation-id>319</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>3</day>
                    <month>3</month>
                    <year>2022</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 GIDUDU S et al.</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/11-319/pdf"/>
            <abstract>
                <p>
                    <bold>Background:</bold> The study aimed at determining the predictive values of Widal&#x2019;s test against culture and the antimicrobial sensitivity profile of 
                    <italic toggle="yes">Salmonella typhi</italic> (
                    <italic toggle="yes">S. typhi</italic>) isolates from patients attending private health facilities in Mbale city, Uganda.</p>
                <p>
                    <bold>Methods:</bold> This was a quantitative cross-sectional study in which 172 participants were recruited. Blood and stool samples collected were cultured; and to each stool sample the following tests were done; Xylose Lysine Deoxycholate (XLD), 
                    <italic toggle="yes">Salmonella Shigella</italic> agar (SSA), and MacConkey. Isolates suggestive for 
                    <italic toggle="yes">S. typhi</italic> were examined with triple sugar iron (TSI) and SIM (Sulphur, indole, and motile) and antibiotic sensitivity test (Ciprofloxacin, Imipenem, Ceftriaxone, Chloramphenicol and Augmentin for sensitivity testing) conducted with Mueller Hinton respectively. Generated data was entered into the Epidemiological information (Epi Info) software (version 7) and analyzed using the contingency table to determine the sensitivity, specificity, positive predictive value and the negative predictive value. The analysis was then presented in form of graphs and tables.</p>
                <p>
                    <bold>Results:</bold> The positive predictive value (PPV) for Widal&#x2019;s test was 6.8% while the negative predictive value (NPV) was 100%. Three isolates were sensitive to Ciprofloxacin (3, 100%) and Imipenem (3, 100%), intermediate to Ceftriaxone (2, 67%) and resistant to Chloramphenicol (2, 67%) and Augmentin (2, 67%).</p>
                <p>
                    <bold>Conclusion:</bold> In comparison with culture, Widal&#x2019;s test is highly sensitive (100%) with a low specificity of 76% and PPV (6.8%) and NPV (100%). It should therefore be followed up with a more specific confirmatory test. 
                    <italic toggle="yes">S. typhi</italic> was highly sensitive to both Ciprofloxacin and Imipenem; and resistant Chloramphenicol and Augmentin.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Typhoid fever</kwd>
                <kwd>Widal's test</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>The global burden of typhoid fever was estimated at 17 million cases with 178,000 deaths in 2015 with more cases being reported in South Asia, South East Asia, and Sub-Saharan Africa.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> Whereas typhoid fever appears to be less common or under ascertained in Africa compared to Asia, more recent studies confirm that typhoid fever incidence is high in some parts of Africa.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup>
            </p>
            <p>The prevalence of the fever in Uganda was reported to be 7.6% during the February, 2015 disease outbreak that started from Kampala City
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> and by the month of December 2015, the cases were reported by nearly all districts in Uganda with central region reporting the highest numbers followed by Northern, Western and Eastern respectively. In Mbale specifically, the prevalence of typhoid fever was reported at 1.3%.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup>
            </p>
            <p>The recommended diagnosis for typhoid fever in Uganda is by use of culture, rapid antibody tests, Polymerase Chain Reaction (PCR) and relative leukopenia tests and not Widal&#x2019;s test
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>; and the antibiotics used for treatment include Ciprofloxacin, Chloramphenicol, Ceftriaxone, and or Amoxicillin depending on the fever&#x2019;s severity.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup> Private health facilities in Mbale city are still depending on the Widal&#x2019;s test that is no longer recommended to diagnose typhoid fever which isn&#x2019;t the case in public health facilities. The test is not recommended because of its low positive predictive value (60%) and low negative predictive value (75.2%).
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> The non-compliance to the diagnostic guidelines of diagnosing typhoid fever is causing inappropriate drug prescription and multidrug resistance development against antibiotics like ampicillin, chloramphenicol and ciprofloxacin.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
            </p>
            <p>Since accurate diagnosis is crucial to the management of typhoid fever,
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> the research aimed at determining the predictive values of Widal&#x2019;s test against culture and the antimicrobial sensitivity profile of 
                <italic toggle="yes">S. typhi</italic> isolates from patients attending private health facilities in Mbale city, Uganda; and give information about how typhoid fever is being managed in private health facilities, act as a basis for developing or re-enforcing policies on typhoid fever management, and also act as a reference to other researchers adventuring in the same field of study.</p>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>Methods</title>
            <sec id="sec3">
                <title>Ethical considerations</title>
                <p>This study was approval by the Mbale regional referral hospital research ethical committee (MRRH REC) with a reference of MRRH-REC IN-COM 006/2018 before data collection. MRRH REC is accredited by UNST with a registration number of UG-REC-011. Permission was sought from Mbale city authorities and private health facility authorities before conducting the study. A written consent was sought from the participants prior to recruitment into the study. Codes instead of names were used as sample identification numbers for confidentiality purposes. Results obtained were availed to the clinicians and the research participants for health management purposes. The 
                    <italic toggle="yes">S. typhi</italic> isolates and the data summary was kept safely in the Mbale regional referral hospital microbiology laboratory.</p>
            </sec>
            <sec id="sec4">
                <title>Patients and samples</title>
                <p>This was a quantitative cross-sectional study that recruited 172 patients clinically suspected for typhoid fever and seeking treatment from private clinics in Mbale city between December, 2017 to January, 2018. A systematic sampling technique was used to identify and enroll four participants (every 1st, 3rd, 5th and 7th) from each private health facility into the study. The sample size was used to obtain the number of private facilities to be enrolled into the study (i.e., sample size/number of expected participants per facility). The study included typhoid suspects seeking diagnosis and treatment in private health facilities during the period of study and consented in writing to participate in the study. Those who were on antibiotics within one month of the study were excluded. Both blood samples (10 ml and 2 ml) and stool samples (2 g) were collected from the research participants for study and treatment purposes.</p>
            </sec>
            <sec id="sec5">
                <title>Specimen collection/sampling procedure</title>
                <p>Using a vacuum extraction blood-sampling system, 10 mls of blood was aseptically collected from the research participants and dispensed directly into the BD blood culture bottles. 2 ml syringes were used to aseptically collect 2 ml of blood from the research participants, discard the needle, open the plan vacutainer tube to dispense the 2 ml volume of collected blood into the plan vacutainer; this was used for Widal&#x2019;s test by the laboratory staff at the private health facility as routine. Following orientation, research participants scooped 2 g of fresh stool samples using the spoon in the clean leak-proof containers that were free from disinfectant or detergent residue and recapped with tight-fitting, leak-proof lids; and delivered to the private health facility laboratory where it was inoculated into a Cary Blair media for transportation to the microbiology laboratory for culture. Both blood and stool samples including the request form were triple packaged and transported to the microbiology Laboratory Unit at Microbiology Department in Mbale regional referral hospital. Other information collected from the research participants included demographic data such age and gender and the Widal&#x2019;s test result at the private health facility.</p>
            </sec>
            <sec id="sec6">
                <title>Blood and stool culture and sensitivity</title>
                <p>BD blood culture bottles inoculated with blood samples were inserted into the Bactec machine for incubation set at 37&#x00b0;C for up to seven days. While, Stool samples were inoculated on XLD, SS agar (placed in the incubator set at 37&#x00b0;C for 24 hours) and MacConkey was first placed into anerobic gar before placing it in the incubator in order to limit the background of environmental flora and allow only 
                    <italic toggle="yes">S. typhi</italic> to grow. Gram reaction testing, triple iron sugar (TSI), and SIM biochemical testing were performed on isolates for identification purposes. The susceptibility of each bacteria to each antibiotic disk (Ciprofloxacin, Ceftriaxone, Azithromycin, Amoxiclave, Imipenem and Chloramphenicol) was done using the disc diffusion method and results recorded as resistant (R), Intermediate (I) and Sensitive (S).</p>
            </sec>
            <sec id="sec7">
                <title>Data management and analysis</title>
                <p>Data generated from the study was entered into the Epidemiological information (Epi Info) software (version 7) and analyzed using the contingency table to determine the sensitivity, specificity, positive predictive value and the negative predictive value. The analysis was then presented in form of graphs and tables.</p>
            </sec>
            <sec id="sec8">
                <title>Safety and environment</title>
                <p>The personal protective equipment (examination gloves, lab coats and closed shoes) was put on during sample collection and sample processing procedures. The media (except blood culture broth) were prepared aseptically, and incubated to rule out contamination. All Laboratory procedures were done following the standard operation procedures (SOPs) guide lines of the Mbale regional referral hospital microbiology laboratory.</p>
            </sec>
        </sec>
        <sec id="sec9" sec-type="results">
            <title>Results</title>
            <sec id="sec10">
                <title>Demographic characteristics of research participants</title>
                <p>A total of 172 participants, 55% female and 45% male, aged between 17 to 50 years were enrolled for the study. Majority of the participants were aged between 18 and 34 years and few were those above 50 years of age (
                    <xref ref-type="fig" rid="f1">Figure 1</xref>).</p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>Figure 1. </label>
                    <caption>
                        <title>Age and gender composition of the research participants.</title>
                    </caption>
                    <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/121530/637ad3f2-197c-4b61-8681-992933d94f6f_figure1.gif"/>
                </fig>
            </sec>
            <sec id="sec11">
                <title>Comparison of Widal&#x2019;s test with bacterial culture</title>
                <p>
                    <bold>Occurrence of 
                        <italic toggle="yes">S. typhi</italic> positive participants</bold>
                </p>
                <p>Out of the 172 Widal&#x2019;s tests that were done in the private health facility, 44 (25.6%) were reactive and 128 (74.4%) were non-reactive. When compared to the gold standard, culture had 3 (1.7%) 
                    <italic toggle="yes">S. typhi</italic> isolates and 169 (98.3%) did not have any significant growth (
                    <xref ref-type="table" rid="T2">Table 2</xref>).</p>
                <p>The samples were drawn from 43 private health facilities of which only three (7%) had 
                    <italic toggle="yes">S. typhi</italic> isolated from their referred samples (
                    <xref ref-type="fig" rid="f2">Figure 2</xref>).</p>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>Figure 2. </label>
                    <caption>
                        <title>Comparison of typhoid diagnosis using Widal&#x2019;s test and culture in private health facility.</title>
                    </caption>
                    <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/121530/637ad3f2-197c-4b61-8681-992933d94f6f_figure2.gif"/>
                </fig>
                <p>
                    <italic toggle="yes">S. typhi</italic> was isolated more from the male participants (67%, 2/3) as compared to the female counterparts (33%, 1/3). These isolates were mainly obtained from two age groups namely 18-34 years and 35-49 years with more amongst the 18-34 years age group (67%, 2/3). The 
                    <italic toggle="yes">S. typhi</italic> was isolated from three (03) stool samples and none from blood samples.</p>
                <p>
                    <bold>Diagnostic accuracy study</bold>
                </p>
                <p>This study showed the Widal&#x2019;s test diagnostic accuracy to be as follows: sensitivity (100%), specificity (76%), positive predictive value (6.8%) and negative predictive value (100%) (
                    <xref ref-type="table" rid="T2">Table 2</xref>).</p>
            </sec>
            <sec id="sec12">
                <title>The antimicrobial sensitivity profiles</title>
                <p>
                    <bold>Drug sensitivity patterns</bold>
                </p>
                <p>This study showed that the drugs i.e., Chloramphenicol and Augmentin demonstrated resistance each at 67% (2/3). Those that were highly sensitive included Ciprofloxacin and Imipenem each at 100% (3/3). Ceftriaxone 67% (2/3) was intermediate (
                    <xref ref-type="table" rid="T1">Table 1</xref>).</p>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>Table 1. </label>
                    <caption>
                        <title>Antibiotic sensitivity pattern.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Antibiotic</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Resistance</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Sensitivity</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Intermediate</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Ciprofloxacin (CIP)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">03</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Imipenem (IPM)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">03</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Augmentin (AUG)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">02</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">01</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Chloramphenicol (C)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">02</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">01</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Ceftriaxone (CRO)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">01</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">02</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <table-wrap id="T2" orientation="portrait" position="float">
                    <label>Table 2. </label>
                    <caption>
                        <title>Culture and Widal&#x2019;s test results.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="2" valign="top">Widal&#x2019;s test results</th>
                                <th align="left" colspan="4" rowspan="1" valign="top">Culture results</th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Positive</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Negative</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Total</th>
                                <th align="left" colspan="1" rowspan="1" valign="top"/>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Reactive</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">3 (6.8%)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">41 (93.2%)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">44 (25.6%)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>PPV = 6.8%</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Non-reactive</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">00</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">128 (100%)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">128 (74.4%)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>NPV = 100%</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Total</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">3 (1.7%)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">169 (98.3%)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">172 (100%)</td>
                                <td colspan="1" rowspan="2"/>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1"/>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Sensitivity = 100%</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Specificity = 76%</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <p>Key: PPV = Positive predictive value; NPV = Negative predictive value.</p>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
        </sec>
        <sec id="sec13" sec-type="discussion">
            <title>Discussion</title>
            <p>This study revealed the Widal&#x2019;s test had a positive predictive value (PPV) of 6.8% implying that, there was a 6.8% probability that the participant with a positive Widal&#x2019;s test result truly had typhoid fever.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> This finding was similar to most of the studies reviewed whose PPV was below 60% with exception of Minjibir (2020) whose PPV was 68.2%.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> Therefore, the Widal&#x2019;s test is not dependable for the diagnosis of typhoid fever.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> This study revealed that the Widal&#x2019;s test had a negative predictive value (NPV) of 100%. This implied that, there was a likelihood that the participant with negative Widal&#x2019;s test results truly didn&#x2019;t have typhoid fever.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> This finding was similar to most of the studies reviewed whose NPV was above 90% with exception of Mengist (2017) and Mawazo (2019) who obtained 75.2% and 89.7% respectively.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> Therefore, the Widal&#x2019;s test result can serve as a good indicator of the absence of typhoid fever.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> This study revealed that the Widal&#x2019;s test had a sensitivity of 100%. This indicated that, the Widal&#x2019;s test has the ability to rule out the presence of typhoid fever and this surpasses that of Widal&#x2019;s test acceptable of 70%.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup> This finding was similar to most of studies with exception of Yousif (2018) whose value was 26.5%.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> This study also revealed that the Widal&#x2019;s test has a specificity of 76%. This indicated that Widal&#x2019;s test has the ability to identify positive cases although with a high false positive rate of 93.2% (41/44). This was so probably because typhoid fever is uncommon among the participants hence giving a large proportion of false positive test results and this explains partly why this study&#x2019;s positive predictive value was low (6.8%).
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> This finding was similar to most of the studies reviewed whose value was above 70% specificity with exception of Deksissa and Gebremedhin (2019), Mawazo (2019) and Muthoni (2016) whose values were 44.4%, 18.3% and 47.7% respectively.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> As described by many scholars, false diagnosis of typhoid fever can lead to an inappropriate treatment which eventually leads to antibiotic resistance development, a serious threat to the global public health which if not addressed in time, may lead to mortality.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> This study described the antibiotic sensitivity profile of 
                <italic toggle="yes">S. typhi.</italic> Chloramphenicol was 67% (2/3) resistant, a finding was similar to Wasihum et al (2015) and Deksissa and Gebremedhi (2019) who reported 76.1% and 20% resistance respectively.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> Augmentin was 67% (2/3) resistant, a finding similar to Wasihum et al (2015) and; Deksissa and Gebremedhi (2019) also reported 2.6% and 100% resistance.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> This study&#x2019;s finding was however contrary to Chaudhary et al (2016) who reported Augmentin as 94.3% sensitive.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> This study also revealed that Ciprofloxacin was 100% (3/3) sensitive which finding was contrary to Wasihum et al (2015) who reported (76.1%).
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> This study&#x2019;s finding of Ceftriaxone being 67% (2/3) intermediate was contrary to Deksissa and Gebremedhi (2019) who reported 100% sensitivity.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
            </p>
            <sec id="sec14">
                <title>Limitations</title>
                <p>The limitation of this study was the very few 
                    <italic toggle="yes">S. typhi</italic> isolates since this did not provide adequate information on the antibiotic resistance profile of Mbale city. Future studies would increase the scope and study in order to obtain more 
                    <italic toggle="yes">S. typhi</italic> isolates such that adequate information on the antibiotic profile is obtained.</p>
            </sec>
        </sec>
        <sec id="sec15" sec-type="conclusion">
            <title>Conclusion</title>
            <p>In comparison with culture, the gold standard, Widal&#x2019;s test is highly sensitive (100%) with a low specificity of 76% and PPV (6.8%) and NPV (100%). It should therefore be followed up with a more specific confirmatory test. 
                <italic toggle="yes">S. typhi</italic> was highly sensitive to both Ciprofloxacin and Imipenem; and resistant Chloramphenicol and Augmentin.</p>
            <sec id="sec16">
                <title>Impact statement</title>
                <p>This study is significant in that, it gives information about how typhoid fever is being managed in private health facilities, act as a basis to develop or re-enforce policies on typhoid fever management, and also act as a reference to other researchers adventuring in the same field of study. Inappropriate typhoid diagnosis in Mbale city private health facilities could lead to inappropriate antibiotic prescription, antibiotic resistance development and death. Conducting this comparative study and determining the antimicrobial sensitivity profile will provide information on typhoid fever management in private health facilities in Mbale city.</p>
            </sec>
        </sec>
        <sec id="sec17">
            <title>Data availability</title>
            <p>The data that support the findings of this study are available on request from the corresponding author, [SG]. The data are not publicly available because they contain information that could compromise the privacy of research participants. In the event that the reader needs access to the said data, they could do so by writing an email to the corresponding author, [SG] detailing justification for the primary data source request.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgements</title>
            <p>The author(s) would like to thank Makerere University for technical support while conducting the study; and with permission, the author(s) acknowledges the administrative support from Rt. Rev. Patrick Gidudu, DR. Can. Hannah Gidudu, Rev. Prof. Dr. Jeanette Meadway and Mr. John Meadway that facilitated the study. The views expressed in the submitted article are author(s) own and not an official position of the institution.</p>
        </ack>
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    </back>
    <sub-article article-type="reviewer-report" id="report204934">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.121530.r204934</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Welekidan</surname>
                        <given-names>Letemichael Negash</given-names>
                    </name>
                    <xref ref-type="aff" rid="r204934a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-0763-0841</uri>
                </contrib>
                <aff id="r204934a1">
                    <label>1</label>Food safety, Norwegian University of Life Sciences, Oslo, Norway</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>3</day>
                <month>10</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Welekidan LN</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport204934" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.109968.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>
                <bold>Summary of the paper:</bold>
            </p>
            <p> </p>
            <p> The article tried to evaluate widal test as a diagnostic test for typhoid fever in private clinics in Mbale, Uganda. The paper mentioned that widal test is not recommended in Uganda for diagnosing typhoid fever due to low positive and negative predictive values but the private clinic in Uganda still uses it. This paper aimed at evaluating widal test and antimicrobial susceptibility test for 
                <italic>Salmonella typhi (S.typhi)</italic>, the causative agent of typhoid fever.</p>
            <p> </p>
            <p> The result showed the the sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of widal test and the antimicrobial susceptibility pattern of
                <italic> S.typhi</italic>.</p>
            <p> </p>
            <p> 
                <bold>Questions:</bold> 
                <list list-type="order">
                    <list-item>
                        <p>If widal test is not recommended by the ministry of health of Uganda due to its low PPV and NPV, so what gap are you going to fill from this paper's finding?</p>
                    </list-item>
                    <list-item>
                        <p>What technique and what sample have you used for the widal test and how you performed? I could not find it in the paper.</p>
                    </list-item>
                    <list-item>
                        <p>You have cultured both blood and stool samples, what was the purpose to culture both&#x00a0; the samples and how did you present the results for both samples is not clear?</p>
                    </list-item>
                    <list-item>
                        <p>What software do you used for analysis of drug susceptibility profile (DST) and participant's data?</p>
                    </list-item>
                    <list-item>
                        <p>In the result part, it is written that participant age range is 17-50 but figure-1 shows also &lt;17 years. Make a correction or justify it why you put it like that</p>
                    </list-item>
                    <list-item>
                        <p>How did you calculate the sensitivity, specificity, PPV and NPV?</p>
                    </list-item>
                    <list-item>
                        <p>I suggest reorder the table numbers and correct its citation on the text, and text should be before the table and correct the table for antimicrobial susceptibility profile</p>
                    </list-item>
                    <list-item>
                        <p>Figure captions should be at the bottom of the figure, make corrections to your figure captions.</p>
                    </list-item>
                    <list-item>
                        <p>Use one suitable subtitle under the result part; e.g you used: Comparison of widal test with bacterial culture and under it Occurrence of 
                            <italic>S.typhi</italic> positive participants and same comment for the antimicrobial sensitivity profile</p>
                    </list-item>
                    <list-item>
                        <p>In the discussion part you did not justify or reason out for the disagreement between your study and other studies when applicable.</p>
                    </list-item>
                    <list-item>
                        <p>In your introduction it is written that widal test is not recommended by the ministry of health of Uganda but you concluded that widal test should be followed by specific confirmatory test. As the ministry of health is recommended already these specific tests that you are referring for as primary diagnostics, so are you recommending to the policy makers to use widal test or recommending for what they have already recommend? Make it clear.</p>
                    </list-item>
                    <list-item>
                        <p>There are spelling errors</p>
                    </list-item>
                    <list-item>
                        <p>&#x00a0;Over all the paper looks shallow so try to enrich it to make it a good paper.</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Partly</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Microbiologist</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment11129-204934">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>GIDUDU</surname>
                            <given-names>Samuel</given-names>
                        </name>
                        <aff>Workforce development, Uganda National Institute of Public Health, Kampala, Uganda</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>22</day>
                    <month>2</month>
                    <year>2024</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <list list-type="order">
                        <list-item>
                            <p>If widal test is not recommended by the ministry of health of Uganda due to its low PPV and NPV, so what gap are you going to fill from this paper's finding?
                                <bold>&#x00a0;The gap to be filled is providing evidence-based information to the policy implementer&#x00a0;in order to enforce appropriate diagnostic&#x00a0;technique for Typhoid fever in Mbale city&#x00a0;</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>What technique and what sample have you used for the widal test and how you performed? I could not find it in the paper.
                                <bold>&#x00a0;This been made clearer in the newer vision of the article. As quick response, we only retrieved Widal test results from the private health facility. and collected samples for Culture and Sensitivity. Also to mention. We did not interfere with the procedure used at the private health facility but rather requested them to also collect blood for culture in addition to their routine method of Widal testing.</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>You have cultured both blood and stool samples, what was the purpose to culture both&#x00a0; the samples and how did you present the results for both samples is not clear?&#x00a0;
                                <bold>This been made clearer in the newer vision of the article.&#x00a0;As quick response, We cultured both blood and stool to widen the scope of investigation of typhoid fever.</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>What software do you used for analysis of drug susceptibility profile (DST) and participant's data?&#x00a0;
                                <bold>We did not use a software to do the analysis but rather a contingency table that was generated from Epidemiological information (Epi Info) software (version 7).</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>In the result part, it is written that participant age range is 17-50 but figure-1 shows also &lt;17 years. Make a correction or justify it why you put it like that: 
                                <bold>This has been corrected to read &lt;17 to &gt;50. all persons below 17 years were summed up</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>How did you calculate the sensitivity, specificity, PPV and NPV?&#x00a0;
                                <bold>We used stardard formulas to calculate these. The formulas have been included in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>I suggest reorder the table numbers and correct its citation on the text, and text should be before the table and correct the table for antimicrobial susceptibility profile: 
                                <bold>This have been addressed in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>Figure captions should be at the bottom of the figure, make corrections to your figure captions.&#x00a0;
                                <bold>This have been addressed in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>Use one suitable subtitle under the result part; e.g you used: Comparison of widal test with bacterial culture and under it Occurrence of&#x00a0;
                                <italic>S.typhi</italic>&#x00a0;positive participants and same comment for the antimicrobial sensitivity profile&#x00a0;
                                <bold>This have been addressed in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>In the discussion part you did not justify or reason out for the disagreement between your study and other studies when applicable.
                                <bold>This have been addressed in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>In your introduction it is written that widal test is not recommended by the ministry of health of Uganda but you concluded that widal test should be followed by specific confirmatory test. As the ministry of health is recommended already these specific tests that you are referring for as primary diagnostics, so are you recommending to the policy makers to use widal test or recommending for what they have already recommend? Make it clear.&#x00a0;
                                <bold>This have been addressed in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>There are spelling errors.&#x00a0;
                                <bold>This have been addressed in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>&#x00a0;Over all the paper looks shallow so try to enrich it to make it a good paper.&#x00a0;
                                <bold>This have been addressed in the newer version of the manuscript</bold>
                            </p>
                        </list-item>
                    </list>
                </p>
            </body>
        </sub-article>
    </sub-article>
</article>
