<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.124473.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Serum levels of &#x03b1;1-antitrypsin, interleukin-1&#x03b2; and interleukin-6 in Iraqi COVID-19 patients: A cross-sectional study</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Abd</surname>
                        <given-names>Hayder A.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Kasim</surname>
                        <given-names>Ali A.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-0674-0969</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Shareef</surname>
                        <given-names>Laith G.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-7773-8474</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Clinical Laboratory Science, College of Pharmacy, University of Baghdad, Baghdad, 10011, Iraq</aff>
                <aff id="a2">
                    <label>2</label>Department of Pharmacy, Al-Esraa University College, Baghdad, 10011, Iraq</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:Laithalkunani@yahoo.com">Laithalkunani@yahoo.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>10</day>
                <month>8</month>
                <year>2022</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2022</year>
            </pub-date>
            <volume>11</volume>
            <elocation-id>921</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>5</day>
                    <month>8</month>
                    <year>2022</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Abd HA et al.</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/11-921/pdf"/>
            <abstract>
                <p>
                    <bold>Background:</bold> More than half of the individuals diagnosed with coronavirus disease 2019 (COVID-19) have been found to have high levels of interleukin (IL)-6. A recent report showed that more elevated serum IL-6 level predicts COVID-19 disease severity and patients&#x2019; clinical outcomes. Therefore, this study aimed to compare the serum levels of &#x03b1;1-antitrypsin (AAT), IL-1&#x03b2;, and IL-6 between COVID-19 patients and healthy individuals.</p>
                <p>
                    <bold>Methods:</bold> During the data collection phase, 90 individuals were enrolled, 45 healthy controls, and 45 patients confirmed with COVID-19 using reverse transcription-quantitative PCR (RT-qPCR) at a specialized isolation hospital in Baghdad between November 2021 and March 2022. In this cross-sectional research, venous blood samples were taken, and serum was isolated and stored for quantitative ELISA measurements of AAT, IL-1&#x03b2;, and IL-6 (ELISA). IBM SPSS version 24 was used to analyze the data.</p>
                <p>
                    <bold>Results:</bold> This study revealed a significant increase in the serum levels of AAT, IL-1&#x03b2;, and IL-6 in the COVID-19 patients&#x2019; group compared to the healthy control group with p-values &lt; 0.001 for each of these markers.</p>
                <p>
                    <bold>Conclusions:</bold> AAT concentrations were higher during COVID-19; this elevation is essential during infection. IL-1&#x03b2; and IL-6 levels were also elevated during the infection period; however, dysregulated high levels may lead to cytokine release syndrome. Therefore, these three biomarkers can be regarded as diagnostically crucial parameters.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>COVID-19</kwd>
                <kwd>SARS-CoV-2</kwd>
                <kwd>&#x03b1;1-antitrypsin</kwd>
                <kwd>interleukin-1&#x03b2;</kwd>
                <kwd>interleukin-6</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec20">
            <title>Expression of Concern</title>
            <p>Expression of Concern (20
                <sup>th</sup> October 2023): We, the Publisher and Editor of F1000Research, are issuing an Expression of Concern for the following article:</p>
            <p>Abd HA, Kasim AA and Shareef LG. Serum levels of &#x03b1;1-antitrypsin, interleukin-1&#x03b2; and interleukin-6 in Iraqi COVID-19 patients: A cross-sectional study [version 1; peer review: awaiting peer review]. 
                <italic toggle="yes">F1000Research</italic> 2022, 11:921 (
                <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.12688/f1000research.124473.1">https://doi.org/10.12688/f1000research.124473.1</ext-link>).</p>
            <p>After publication of this article, questions about the integrity of the ethical approval and methodology were brought to the attention of the F1000 Editorial Team. We have reached out to the authors requesting that they respond to the concerns raised and provide additional information to support the integrity of the content. However, despite multiple attempts to contact the authors, and their institution, they have not responded to our queries within the requested timeframe. Therefore, as we continue to work through the issues raised, we advise readers to interpret the information presented in the article with due caution. The authors have been sent notification about this Expression of Concern.</p>
        </sec>
        <sec id="sec19">
            <title>Editorial note</title>
            <p>Editorial Note (13
                <sup>th</sup> July 2023): Since publication, concerns have been raised to the Editorial Team regarding the ethical approval for this study, as well as overlap in the sample and methods to other papers by these authors. The Editorial Team requested explanations regarding the similarities on 19
                <sup>th</sup> May and 6
                <sup>th</sup> June 2023, and the institution was contacted on 21
                <sup>st</sup> March, 6
                <sup>th</sup> April and 25
                <sup>th</sup> April 2023 to verify the ethical approval. Neither the author nor institution have provided responses to our requests. The Editorial Team will update this Editorial Note as the situation progresses. Peer review activity has been suspended for this article until we receive an explanation from the authors/institution.</p>
        </sec>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>A cluster of pneumonia cases with unknown origins emerged in Wuhan, Hubei Province, China, in December 2019. On January 7, 2020, the causal microorganism was identified as a novel coronavirus (CoV) known as 2019-nCoV.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> The virus was later termed severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> The World Health Organization (WHO) termed the illness coronavirus disease 2019 (COVID-19). The illness has spread internationally, and WHO designated it a pandemic on March 11, 2020.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> COVID-19, like the other coronavirus infections, severe acute respiratory syndrome (SARS) and the Middle East respiratory syndrome (MERS), have been associated with increased cytokine production. The cytokine release syndrome, often known as a &#x201c;cytokine storm&#x201d;, has been broadly acknowledged as the principal cause of morbidity in these coronavirus outbreaks.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> In addition, cytokine storm has been linked to the development of acute respiratory distress syndrome and multiorgan dysfunction syndrome after COVID-19 infection.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> SARS-CoV-2 activates the NLR family pyrin domain containing 3 (NLRP3) inflammasome, resulting in increased synthesis and release of two cytokines, interleukin (IL)-1&#x03b2; and IL-18.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> In turn, IL-1&#x03b2; stimulates IL-6 production,
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup> while IL-18 stimulates interferon (IFN)-&#x03b3; production.
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> Commonly, the IL-1&#x03b2; pathway is more prevalent in COVID-19 patients than the IL-18 pathway.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup>
            </p>
            <p>Moreover, half of those diagnosed with COVID-19 were reported to have high levels of IL-6.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> According to a recent meta-analysis, a more significant blood IL-6 level is a predictor of COVID-19 disease severity and patient clinical consequences.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> Another meta-analysis concluded that increasing the blood IL-6 level, the more severe the COVID-19 condition and that considerably higher serum levels are observed in patients who did not recover than in people who survived. In addition, they appear more frequently in severely and critically sick COVID-19 sufferers than in moderately unwell COVID-19 patients, and they occur more frequently in individuals who died from the condition than in those who live.
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> The Food and Drug Administration (FDA) licensed two types of IL-6 inhibitors, anti-IL-6 receptor monoclonal antibodies (mAbs) and anti-IL-6 mAbs, to modify IL-6 levels or effects to minimize the severity of COVID-19 in patients with systemic inflammation.
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> Serum IL-1&#x03b2; concentrations were found to be much higher in COVID-19 patients, and many trials looked at the use of anakinra, an IL-1&#x03b2; receptor blocker, in managing COVID-19 cases of acute severe respiratory distress, with mixed outcomes.
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref26">26</xref>
                </sup> Landi 
                <italic toggle="yes">et al.</italic>, showed that giving canakinumab, an anti-IL-1&#x03b2; mAb, to COVID-19 patients with acute severe respiratory failure results in clinical improvement.
                <sup>
                    <xref ref-type="bibr" rid="ref27">27</xref>
                </sup>
            </p>
            <p>&#x03b1;1-antitrypsin (AAT) is an acute phase reactant primarily synthesized in the liver and released into circulation serving a range of physiological effects. Monocytes/macrophages, activated neutrophils, and epithelial cells express it less.
                <sup>
                    <xref ref-type="bibr" rid="ref28">28</xref>
                </sup> In addition, several cytokines, including IL-1&#x03b2;, IL-6, tumor necrosis factor (TNF)-&#x03b1;, and bacterial lipopolysaccharide, induce hepatocytic expression.
                <sup>
                    <xref ref-type="bibr" rid="ref29">29</xref>
                </sup> AAT is the prototypical member of the superfamily of serine protease inhibitors (serpins). The primary role of AAT is not to block proteases but to modulate their proteolytic activity, such as encouraging effective host resistance to infections while preserving healthy tissue from proteolytic harm.
                <sup>
                    <xref ref-type="bibr" rid="ref30">30</xref>
                </sup> In addition to protecting against proteolytic injury, AAT has an essential role in reducing acute pulmonary damage by interfering with inflammation, coagulation, and induction of apoptosis.
                <sup>
                    <xref ref-type="bibr" rid="ref31">31</xref>
                </sup>
            </p>
            <p>Both in chronic obstructive pulmonary disease (COPD) and emphysema, AAT deficiency has been associated with alveolar cell destruction.
                <sup>
                    <xref ref-type="bibr" rid="ref32">32</xref>
                </sup> AAT from healthy human donors may be used to boost alpha-1 levels in the blood and lungs of individuals with AAT deficiency who have been diagnosed with emphysema.
                <sup>
                    <xref ref-type="bibr" rid="ref33">33</xref>
                </sup> Yang 
                <italic toggle="yes">et al.</italic>, suggested that people with AAT deficiency are more likely to get COVID-19 and also have worse prognosis compared to healthy people and that for COVID-19 patients with AAT deficiency who are receiving augmentation therapy with human plasma purified AAT, a dose more significant than just the standard maintenance dosages must be considered.
                <sup>
                    <xref ref-type="bibr" rid="ref34">34</xref>
                </sup> In addition, several investigations have shown that human AAT has anti-inflammatory and anti-COVID-19 properties.
                <sup>
                    <xref ref-type="bibr" rid="ref35">35</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref38">38</xref>
                </sup>
            </p>
            <p>This research aimed to compare the blood levels of AAT, IL-1&#x03b2;, and IL-6 in COVID-19 patients to those in seemingly healthy people and to look for any possible links between these inflammatory markers.</p>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>Methods</title>
            <sec id="sec3">
                <title>Ethical approval</title>
                <p>This study was carried out in compliance with the declaration of Helsinki.
                    <sup>
                        <xref ref-type="bibr" rid="ref39">39</xref>
                    </sup> and was approved by the University of Baghdad&#x2019;s Faculty of Pharmacy&#x2019;s Ethics Committee (ethics board approval code: 193221) on 10
                    <sup>th</sup> April 2021. Before signing their involvement agreements and written consent, all participants were informed of the study&#x2019;s purpose and potential benefits.</p>
            </sec>
            <sec id="sec4">
                <title>Study design</title>
                <p>This study was designed as a cross-sectional study. Blood samples were taken from patients admitted to isolation hospitals in Baghdad for clinical investigation during the period from November 2021 to March 2022.</p>
            </sec>
            <sec id="sec5">
                <title>Subjects</title>
                <p>This research included 90 individuals of both sexes. A total of 45 of them were diagnosed clinically with COVID-19 and proven with a positive result of nucleic acid amplification testing by reverse transcription-quantitative (RT-q) PCR of respiratory specimens, which were nasal/oropharyngeal swabs, to fulfill the COVID-19 patient group, with 45 healthy adults of an equivalent age and sex representing as the control group.</p>
            </sec>
            <sec id="sec6">
                <title>Variables</title>
                <p>The main objective of the present research was to assess the levels of AAT, IL-1&#x03b2;, and IL-6.</p>
            </sec>
            <sec id="sec7">
                <title>Sample size</title>
                <p>The software 
                    <ext-link ext-link-type="uri" xlink:href="http://www.gpower.hhu.de/">G*Power</ext-link> (RRID: SCR 013726) version 3.1.9.7 was used to calculate the number of participants. The sample size has to be at least 80 individuals with a 95% confidence interval, 90% power, a two-tailed alpha of 0.05, and an effect size of 0.80 (f). This research included 45 patients in the diseased group and 45 participants in the healthy controls.</p>
            </sec>
            <sec id="sec8">
                <title>Inclusion criteria</title>
                <p>The inclusion criteria for the COVID-19 patient group have been limited to non-vaccinated adults who were clinically diagnosed by a specialist, patients who showed a positive result for COVID-19 by RT-qPCR, had a fever and pulmonary symptoms (cough, shortness of breath, chest tightness, and pain), and patients with radiological findings of consolidation on either a chest X-ray or computed tomography (CT) scan, oxygen saturation was 70&#x2013;85%. Additionally, the control group consisted of healthy, non-vaccinated people.</p>
            </sec>
            <sec id="sec9">
                <title>Exclusion criteria</title>
                <p>Exclusion criteria include individuals who have recently had surgery, probable bacterial pneumonia, renal illness, pregnancy, immunological disorders, trauma, liver disease, respiratory diseases, and vaccine recipients who had a negative RT-qPCR result for COVID-19.</p>
            </sec>
            <sec id="sec10">
                <title>Bias</title>
                <p>The desirable research population is well-defined, easily available, reliable, and has a high possibility of achieving the desired conclusion. To eliminate bias, participants were selected in a way that did not favor those with unusually high or low amounts of COVID-19 exposure. To detect volunteer bias in a sample, we asked control participants whether they thought they were infected.</p>
            </sec>
            <sec id="sec11">
                <title>Study procedure</title>
                <p>Blood samples (3 ml) were obtained from each subject and put in a gel tube for 30 minutes to coagulate.
                    <sup>
                        <xref ref-type="bibr" rid="ref40">40</xref>
                    </sup> The samples were centrifuged at 5,000 RPM for 5 minutes to collect serum for AAT, IL-6, and IL-1&#x03b2; analysis using the enzyme-linked immunosorbent assay (ELISA). All ELISA kits and instruments used in this investigation are listed in 
                    <xref ref-type="table" rid="T1">Table 1</xref>.</p>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>Table 1. </label>
                    <caption>
                        <title>Summary of the ELISA kits and instruments used in this study.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">ELISA kits (96 wells)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Supplier</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Cat. No.</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human ELISA (AAT) kit</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Bioassay Technology Laboratory-China</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E0753Hu</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human ELISA (IL-1&#x03b2;) kit</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Bioassay Technology Laboratory-China</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E0143Hu</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human ELISA (IL-6) kit</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Bioassay Technology Laboratory-China</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E0090Hu</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>Instruments</bold>
                                </td>
                                <td align="left" colspan="2" rowspan="1" valign="middle">
                                    <bold>Origin</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Centrifuge</td>
                                <td align="left" colspan="2" rowspan="1" valign="middle">Kokusan-Japan</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Gel tube</td>
                                <td align="left" colspan="2" rowspan="1" valign="middle">Xinle-China</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Deep freezer (-20&#x00b0;C)</td>
                                <td align="left" colspan="2" rowspan="1" valign="middle">Vestel-Turkey</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Micropipettes (different volumes)</td>
                                <td align="left" colspan="2" rowspan="1" valign="middle">Capp-Denmark</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Microtiter plate reader</td>
                                <td align="left" colspan="2" rowspan="1" valign="middle">Human reader HS-Germany</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <p>Where: ELISA= enzyme-linked immunosorbent assay; AAT= &#x03b1;1-antitrypsin; IL-1&#x03b2;= interleukin-1&#x03b2;; IL-6= interleukin-6.</p>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
            <sec id="sec12">
                <title>Statistical analysis</title>
                <p>For statistical analysis, 
                    <ext-link ext-link-type="uri" xlink:href="https://www.ibm.com/products/spss-statistics">IBM SPSS Statistics</ext-link> (RRID: SCR_016479) version 27 software for Microsoft Windows was used throughout the statistical analysis process. According to the Shapiro-Wilk test, the data were not regularly distributed. To compare the COVID-19 patients group with the control group, the non-parametric Mann-Whitney U test was performed. Each participant&#x2019;s median and interquartile range (IQR) value were calculated. Spearman&#x2019;s Rank correlation coefficient was also used to analyze the relationship between AAT levels and the other indicators tested, IL-6 and IL-1&#x03b2;. A chi-squared test was used to examine categorical variables.</p>
            </sec>
        </sec>
        <sec id="sec13" sec-type="results">
            <title>Results</title>
            <p>The participants in this research varied in age from 39&#x2013;65 years old in the illness group to 37&#x2013;67 years old in the healthy control group. There was no difference in mean age between the patient and control groups (P=0.215). Regarding sex, 23 (51%) of the 45 patients were men, while 22 (49%) were women. A total of 20 (44%) of the 45 people in the control group were men, whereas 25 (56%) were women. 
                <xref ref-type="table" rid="T2">Table 2</xref>
                <sup>
                    <xref ref-type="bibr" rid="ref44">44</xref>
                </sup> shows no significant difference (P=0.527) between the sexes of the participants in this research.</p>
            <table-wrap id="T2" orientation="portrait" position="float">
                <label>Table 2. </label>
                <caption>
                    <title>Assessment of sociodemographic variables.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Variable</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">COVID-19 patient group (n=45)</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">Control group (n=45)</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">P-value</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="middle">
                                <bold>Age, year</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>Median</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>IQR</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>Median</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>IQR</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="2" valign="middle">P=0.215 (Mann-Whitney U test)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">12</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">47</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">11</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="middle">
                                <bold>Sex</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>Male, n (%)</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>Female, n (%)</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>Male, n (%)</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>Female, n (%)</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="2" valign="middle">P=0.527 (Chi-squared)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">23 (51)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">22 (49)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">20 (44)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">25 (56)</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Where: COVID-19= coronavirus disease 2019; IQR= Interquartile range; n= number.</p>
                </table-wrap-foot>
            </table-wrap>
            <p>According to the results of the study, there was a significant difference in the measured value of AAT between the two groups. The median (IQR) levels of AAT in the patient and control groups were 5.55 (1.86) mg/ml and 4.11 (2.82) mg/ml, respectively, with a P=0.001 (
                <xref ref-type="fig" rid="f1">Figure 1</xref>). In terms of IL-1&#x03b2;, this research discovered a substantial difference between the analyzed groups, with the median (IQR) of IL-1&#x03b2; in the COVID-19 patient group being 1,672 (475) pg/L and 923 (178) pg/L in the control group, P=0.001 (
                <xref ref-type="fig" rid="f2">Figure 2</xref>). Also, there is a significant difference in the measured levels of IL-6 between the comparison groups, as indicated in 
                <xref ref-type="table" rid="T3">Table 3</xref> and 
                <xref ref-type="fig" rid="f3">Figure 3</xref>. IL-6 levels in the COVID-19 patient and control groups were 105.8 (39.24) ng/L and 51.15 (12.76) ng/L, respectively, P=0.001.</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Serum AAT level in studied groups. AAT= &#x03b1;1-antitrypsin.</title>
                </caption>
                <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/136669/45c1339e-8893-4a8a-be55-b18c8e4c37dd_figure1.gif"/>
            </fig>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Serum IL-1&#x03b2; level in studied groups. IL-1&#x03b2;= interleukin-1&#x03b2;.</title>
                </caption>
                <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/136669/45c1339e-8893-4a8a-be55-b18c8e4c37dd_figure2.gif"/>
            </fig>
            <table-wrap id="T3" orientation="portrait" position="float">
                <label>Table 3. </label>
                <caption>
                    <title>AAT, IL-1&#x03b2; and IL-6 levels measured in this study.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="2" valign="top">Parameter</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">COVID-19 patient group (n=45)</th>
                            <th align="left" colspan="2" rowspan="1" valign="top">Control group (n=45)</th>
                            <th align="left" colspan="1" rowspan="2" valign="top">P-value</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Median</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">IQR</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Median</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">IQR</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>AAT (mg/ml)</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5.55</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1.86</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4.11</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2.82</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">p&lt;0.001
                                <xref ref-type="table-fn" rid="tfn1">*</xref>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>IL-1&#x03b2; (pg/L)</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1672</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">475</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">923</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">178</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">p&lt;0.001
                                <xref ref-type="table-fn" rid="tfn1">*</xref>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>IL-6 (ng/L)</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">105.8</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">39.24</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">51.15</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">12.76</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">p&lt;0.001
                                <xref ref-type="table-fn" rid="tfn1">*</xref>
                            </td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Where p-value was for Mann-Whitney U test; AAT = &#x03b1;1-antitrypsin; IL-1&#x03b2; = interleukin-1&#x03b2;; IL-6 = interleukin-6; COVID-19 = coronavirus disease 2019; IQR = interquartile range; n = number.</p>
                    <fn-group content-type="footnotes">
                        <fn id="tfn1">
                            <label>*</label>
                            <p>statistically significant when P&lt;0.05.</p>
                        </fn>
                    </fn-group>
                </table-wrap-foot>
            </table-wrap>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <title>Serum IL-6 level in studied groups. IL-6= interleukin-6.</title>
                </caption>
                <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/136669/45c1339e-8893-4a8a-be55-b18c8e4c37dd_figure3.gif"/>
            </fig>
            <p>Correlation studies between AAT, IL-6, and IL-1&#x03b2; of the participants (n=90) are shown in 
                <xref ref-type="table" rid="T4">Table 4</xref>. Serum AAT has a significant positive correlation with IL-1&#x03b2; and IL-6. Also, serum IL-6 has a significant positive correlation with IL-1&#x03b2; (P&lt;0.01).</p>
            <table-wrap id="T4" orientation="portrait" position="float">
                <label>Table 4. </label>
                <caption>
                    <title>Spearman's Rank correlation coefficients between AAT, IL-6 and IL-1&#x03b2;.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="5" rowspan="1" valign="top">Spearman&#x2019;s correlation (n=90)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td colspan="2" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>AAT</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>IL-6</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>IL-1&#x03b2;</bold>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="middle">
                                <bold>AAT</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">r value</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.427
                                <xref ref-type="table-fn" rid="tfn2">**</xref>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.344
                                <xref ref-type="table-fn" rid="tfn2">**</xref>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">P-value</td>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.000</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.001</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="middle">
                                <bold>IL-6</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">r value</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.427
                                <xref ref-type="table-fn" rid="tfn2">**</xref>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.611
                                <xref ref-type="table-fn" rid="tfn2">**</xref>
                            </td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">P-value</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.000</td>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.000</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="2" valign="middle">
                                <bold>IL-1&#x03b2;</bold>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">r value</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.344
                                <xref ref-type="table-fn" rid="tfn2">**</xref>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.611
                                <xref ref-type="table-fn" rid="tfn2">**</xref>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">P-value</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.001</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.000</td>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Where AAT= &#x03b1;1-antitrypsin; IL-1&#x03b2;= interleukin-1&#x03b2;; IL-6= interleukin-6; n= number.</p>
                    <fn-group content-type="footnotes">
                        <fn id="tfn2">
                            <label>**</label>
                            <p>significant at the 0.01 level (two-tailed).</p>
                        </fn>
                    </fn-group>
                </table-wrap-foot>
            </table-wrap>
        </sec>
        <sec id="sec14" sec-type="discussion">
            <title>Discussion</title>
            <p>Because of its anti-inflammatory and anti-viral effects, AAT is a crucial protease inhibitor in the pathophysiology of SARS-CoV-2 infection. Similarly to the current study, the findings of a prior study conducted by Ercin 
                <italic toggle="yes">et al.</italic> (2021), which included 86 participants, 44 patients diagnosed with COVID-19 and 42 as the control group, revealed that patients with COVID-19 infection demonstrated a significant increase in AAT threshold, which is a great predictor for disease termination.
                <sup>
                    <xref ref-type="bibr" rid="ref41">41</xref>
                </sup> IL-6 is a crucial modulator of the inflammatory and immunological response to infection or trauma. Excessive IL-6 levels are associated with cytokine storm, which may result in multiorgan dysfunction and respiratory failure. Controlling systemic IL-6 levels in SARS-CoV-2 infected individuals is thus critical. The present research found that patients in the COVID-19 group had substantially higher IL-6 levels (P=0.001) than participants in the healthy control group, with a median (IQR) of IL-6 for patients being 105.8 (39.24) ng/L and the healthy control group being 51.15 (12.76) ng/L. Tang 
                <italic toggle="yes">et al.</italic>, (2021) performed a cross-sectional study with 100 COVID-19 patients categorized into three subgroups: common (n=56), severe (n=28), and critical (n=16); the mean &#x00b1; SD for each group being 23.93 &#x00b1; 9.64, 69.22 &#x00b1; 22.98, and 160.34 &#x00b1; 26.15, respectively, P=0.05, indicating a significant difference between the three groups.
                <sup>
                    <xref ref-type="bibr" rid="ref42">42</xref>
                </sup> IL-1&#x03b2; is a cytokine that plays a crucial role in immune system activity. Because high levels are linked to cytokine storm syndrome, keeping IL-1&#x03b2; levels under control following COVID-19 infection is critical. The present research found a substantial increase in IL-1&#x03b2; levels in the COVID-19 patient group compared to the healthy control group, with a median (IQR) of 1,672 (475) pg/L for the patient group and 923 (178) pg/L for the control group (P=0.001). Furthermore, Lu 
                <italic toggle="yes">et al.</italic>, (2021) discovered that the levels of IL-1&#x03b2;, along with other examined biomarkers, were considerably higher in COVID-19 patients compared to healthy subjects.
                <sup>
                    <xref ref-type="bibr" rid="ref43">43</xref>
                </sup> As shown in 
                <xref ref-type="table" rid="T4">Table 4</xref>, there is a significant positive correlation between IL-1&#x03b2; and IL-6 (P&lt;0.001), this is because IL-1&#x03b2; stimulates IL-6 production.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup> Also, there is a significant positive correlation between AAT, IL-6, and IL-1&#x03b2; (P&lt;0.001) because the hepatocytic expression of AAT is stimulated by several cytokines, two of them are IL-1&#x03b2; and IL-6.
                <sup>
                    <xref ref-type="bibr" rid="ref29">29</xref>
                </sup>
            </p>
            <sec id="sec15">
                <title>Limitations</title>
                <p>Many exclusion criteria were used in the study to limit the confounding effect. However, because the number of patients in our study was small, we recommend increasing the number of patients in future studies.</p>
            </sec>
        </sec>
        <sec id="sec16" sec-type="conclusions">
            <title>Conclusions</title>
            <p>Because high levels of AAT are crucial during COVID-19 infection, the physician may request a serum AAT level test to prescribe AAT supplements if levels are low. It may also be regarded as a favorable prognostic factor throughout the illness phase, and similar results apply if COVID-19 patients do not have AAT deficiency before being infected with the SARS-CoV-2 virus. IL-1&#x03b2; and IL-6 are significant proinflammatory indicators, and excessive levels of either may cause cytokine release syndrome. In addition, they are a strong predictor of COVID-19 infection.</p>
        </sec>
        <sec id="sec17">
            <title>Data availability</title>
            <sec id="sec18">
                <title>Underlying data</title>
                <p>Zenodo: Demographic data along with a comparison of &#x03b1;1-Antitrypsin, Interleukin-1&#x03b2; and Interleukin -6 levels measured in this study. 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.5281/zenodo.6895591">https://doi.org/10.5281/zenodo.6895591</ext-link>.
                    <sup>
                        <xref ref-type="bibr" rid="ref44">44</xref>
                    </sup>
                </p>
                <p>This project contains the following underlying data:
                    <list list-type="bullet">
                        <list-item>
                            <label>-</label>
                            <p>Serum levels of &#x03b1;-1Antitrypsin, Interleukin-1&#x03b2;, and Interleukin-6.xlsx (demographic data and laboratory results)</p>
                        </list-item>
                    </list>
                </p>
                <p>Data are available under the 
                    <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International license</ext-link> (CC-BY 4.0).</p>
            </sec>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments</title>
            <p>The authors would like to thank the individuals who participated in the study and the COVID-19 care unit staff for their assistance during specimen collection.</p>
        </ack>
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    <sub-article article-type="reviewer-report" id="report405283">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.136669.r405283</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Rosyid</surname>
                        <given-names>Alfian Nur</given-names>
                    </name>
                    <xref ref-type="aff" rid="r405283a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r405283a1">
                    <label>1</label>Universitas Airlangga, Surabaya, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>25</day>
                <month>8</month>
                <year>2025</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2025 Rosyid AN</copyright-statement>
                <copyright-year>2025</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport405283" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.124473.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>1. Please clarify the severity of COVID-19 patient.</p>
            <p> 2. Do author only included mild patient or also included severe or critical-ill groups?</p>
            <p> 3. Why author compared COVID-19 patient vs normal group? We can expected that the study result will show higher level of AAT, IL-6, IL-1&#x03b2; because there were infection in COVID-19 group.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>No</p>
            <p>Reviewer Expertise:</p>
            <p>pulmonary diseases, lung infection, asthma, COPD, OSA, spirometry</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
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