<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="other" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.124602.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Correspondence</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Need for long term safety studies before recommending viral vector vaccines in kids</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Omer Hakim</surname>
                        <given-names>Muhammad</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Zain Azhar</surname>
                        <given-names>Muhammad</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Patel</surname>
                        <given-names>Urvish</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-6702-298X</uri>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Chahar</surname>
                        <given-names>Satya</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Gupta</surname>
                        <given-names>Ruby</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a5">5</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Samala Venkata</surname>
                        <given-names>Vikramaditya</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-2046-2953</uri>
                    <xref ref-type="corresp" rid="c2">b</xref>
                    <xref ref-type="aff" rid="a6">6</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Kukreja</surname>
                        <given-names>Geetika</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c3">c</xref>
                    <xref ref-type="aff" rid="a7">7</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Patil</surname>
                        <given-names>Ashish</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-0986-1152</uri>
                    <xref ref-type="corresp" rid="c4">d</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a8">8</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Pathology, University of Miami Medical Center, Miami, FL, USA</aff>
                <aff id="a2">
                    <label>2</label>2. Florida International University, Miami, FL, USA</aff>
                <aff id="a3">
                    <label>3</label>Public Health Icahn School of Medicine at Mount Sinai, NYC, NY, USA</aff>
                <aff id="a4">
                    <label>4</label>Pathology, University of Mississippi Medical Center, Jackson, MS, USA</aff>
                <aff id="a5">
                    <label>5</label>Hematology and Medical Oncology, William Beaumont Hospital, Royal Oak, MI, USA</aff>
                <aff id="a6">
                    <label>6</label>Internal Medicine, Cheshire Medical Center/Dartmouth Health, Keene, NH, USA</aff>
                <aff id="a7">
                    <label>7</label>Hematology and Medical Oncology, Henry Ford Hospital, Detroit, MI, USA</aff>
                <aff id="a8">
                    <label>8</label>Pathology, University of New Mexico HSC, Albuquerque, NM, Mexico</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:Ruby.gupta@beaumont.org">Ruby.gupta@beaumont.org</email>
                </corresp>
                <corresp id="c2">
                    <label>b</label>
                    <email xlink:href="mailto:sv.vikramaditya@gmail.com">sv.vikramaditya@gmail.com</email>
                </corresp>
                <corresp id="c3">
                    <label>c</label>
                    <email xlink:href="mailto:gkukrej1@hfhs.org">gkukrej1@hfhs.org</email>
                </corresp>
                <corresp id="c4">
                    <label>d</label>
                    <email xlink:href="mailto:aravindrapatil@salud.unm.edu">aravindrapatil@salud.unm.edu</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>18</day>
                <month>8</month>
                <year>2022</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2022</year>
            </pub-date>
            <volume>11</volume>
            <elocation-id>958</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>9</day>
                    <month>8</month>
                    <year>2022</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2022 Omer Hakim M et al.</copyright-statement>
                <copyright-year>2022</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/11-958/pdf"/>
            <abstract>
                <p>Vaccines have played a central role in dealing with COVID-19 pandemic. Now regulatory agencies in USA and around the world have begun approving vaccination for kids. Long term safety profile of live attenuated viral vaccines, inactivated viral vaccines and peptide-based vaccines are well studied in children, are safe and can play a central role in controlling the spread of COVID19 in children. But the long-term safety profile of viral vector-based vaccines is not studied. In the present correspondence we highlight the possibility of random insertional mutagenesis and potential side effects, which might be evident after long-term. Regulators must take into consideration the possibility of insertional mutagenesis and conduct long term studies before approving the viral vector vaccines in children, so that the public have trust in the regulatory agencies and are compliant towards vaccinating their children with safe and effective vaccines.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Vaccine</kwd>
                <kwd>Viral Vector Vaccines</kwd>
                <kwd>COVISHIELD</kwd>
                <kwd>Astrazeneca</kwd>
                <kwd>Insertional mutagenesis</kwd>
                <kwd>Leukemia</kwd>
                <kwd>Cancer</kwd>
                <kwd>Carcinogenesis</kwd>
                <kwd>COVID19</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1">
                    <funding-source>Research Update</funding-source>
                </award-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>COVID-19 infection which is caused by (SARS)-related coronavirus species 2 or SARS-CoV-2 has caused more than 545,226,550 confirmed cases and 6,334,728 deaths as of 30 June 2022.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> Vaccines have played a major role in combating the COVID-19 pandemic with a total of 11,986,040,938 vaccine doses have been administered so far globally.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> Given COVID 19 was a first global pandemic in the digital age, individuals were bombarded with an overabundance of information, some accurate and some not, resulting in a high level of suspicion and decreased compliance for COVID-19 infection testing and vaccines.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> Hence it is imperative to provide accurate information to the people, in-order to allow them to take appropriate decisions to combat the pandemic.</p>
            <p>There are four main types of COVID-19 vaccines which are either approved or are in clinical trial. They are broadly classified into: 1) Nucleic acid vaccines (DNA &amp; RNA vaccines), 2) Viral vector vaccines, 3) Protein subunit vaccines and 4) Whole virus vaccines.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> As of Saturday, June 18, 2022, CDC has recommended that all children six months through five years of age should receive a COVID-19 vaccine.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> SARS-CoV-2 seroprevalence was 68% (95% CI, 63-72%) among children aged 1-4 years, 77% (95% CI, 75-79%) among children aged 5-11 years, and 74% (95% CI, 73-75%) among adolescents aged 12-17 years as of February 2022.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup> As of 4
                <sup>th</sup> July 2022, there were no published clinical trial studies, assessing the safety and efficiency of vaccination in children aged below five years. Since there is a presence of high level of basal SARS-CoV-2 seroprevalence in children and lack of clinical trial studies with sufficient power, in the age group below five years, there are divergent opinions among scientific and medical community regarding the CDC recommendation of vaccinating the kids under five years of age.</p>
            <p>On 5
                <sup>th</sup> May 2022 FDA restricted the use of the J&amp;J shot because of the threat of rare but serious blood clots, to individuals eighteen years and older who cannot access other vaccines.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> Moreover, applications for the use of viral vector vaccines in the pediatric population are still in process. Hence it is imperative to assess the long term and short-term safety profile of viral vector vaccines in the population, especially the pediatric population.</p>
            <p>The viral vector vaccines uses a viral vector to deliver viral spike protein DNA into the cell like modified chimpanzee DNA adenovirus which is an icosahedral viruses with double-stranded DNA (dsDNA) genome in the case of Astrazeneca COVISHIELD,
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> or adenovirus 26 CoV2 in the Johnson &amp; Johnson Ad.26.COV2.S vaccine.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> After the viral vector containing the spike protein DNA epitopes is injected into the body, the vector latches to the human cells and releases the DNA fragment corresponding to spike protein epitopes into the cytoplasm. The released DNA migrates to the nucleus of the host cell where it is transcribed into mRNA, which is further translated into COVID-19 Spike protein epitopes, leading to the activation of cytotoxic T-cells and humoral B-cell responses.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup>
            </p>
            <p>Studies have shown that plasmid DNA or linear dsDNA as in the case of a (linearized) plasmid or PCR products undergo homologous recombination or may integrate randomly at any nicked sites in the genome.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> DNA integration can occur at any phase of cell cycle but is favored during S phase of the cell cycle because the genomic DNA is more accessible during replication.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> Moreover retroviral, lentiviral, and adeno-associated virus (AAV) vectors have been shown to cause random integration of therapeutic gene in the target cell genome.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> This is exemplified by random integration of transgenes in transgenic animals.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> Hence there is a theoretical possibility of rare events of random integration of viral vector DNA or spike protein DNA into the DNA of human cells.</p>
            <p>There are reports of Human adenovirus type 12 (Ad12) inducing primitive neuroectodermal neoplasia&#x2019;s in virus-inoculated newborn Syrian hamsters T637 cell lines, secondary to the random integration of Ad12 DNA into T637 genome.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup> The integration of foreign DNA into the host DNA can disrupt the genes in the host chromosome, giving rise to mutations with a probability of 1/100 th per random integrating event.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup> On an average adenoviral vaccine contains 5&#x00d7;10
                <sup>9</sup> viral particles per dose of vaccine,
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> and adenovirus vectors have been shown to integrate at an efficiency of 10
                <sup>-3</sup> to 10
                <sup>-5</sup> integration per cell.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> Given a single dose of vaccine contains 10
                <sup>9</sup> viral particles, and repetitive booster doses are being used, as well as the fact that millions of people are being vaccinated with viral vector vaccine, the probability of random integration into the genome occurring and knocking out tumor suppressor gene or activating oncogene is significant.</p>
            <p>When lentiviral vector was used to shuttle the IL2 gene into Severe combined immunodeficiency (SCID) infants, four of the nine infants developed leukemia between three and six years after the treatment, with the first case being clinically evident after 3.5 years of therapy. In these infants the leukemic process was attributed to LMO-2 proto-oncogene up-regulation secondary to integration of the wild type IL2RG gene along with the vector into the genome.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> In-addition when adeno-associated viral vectors were used to target hemophilia A gene in nine dogs, researchers discovered 1,741 distinct AAV integration occurrences in genomic DNA of five dogs.
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> Similarly, the viral vector-based vaccines may integrate into our genome at frequencies not known to us and effects of which might be evident many years after vaccination.</p>
            <p>On the other hand Stephen 
                <italic toggle="yes">et al</italic> (showed that when the replication-deficient adenovirus vectors carrying different transgenes were injected intravenously into mice, they integrated into mouse hepatocytes at a very low frequencies comparable to that of spontaneous mutations in mammalian cells.
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup> Since the rate of random&#x00a0;integration also depends on the concentration of heterologous DNA and the amount of virion-packaged adenovirus vector and viral vector vaccines contain far less virions than that used in gene therapy, Stephen et al concluded that the chance of viral vector vaccine induced insertional mutagenesis is very low.
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup> However, heterologous DNA integration occurs at an increased rate in dividing cells, which are predominantly in S-phase and hence integration also depends on the percentage of the cells which are actively dividing and are in S-phase.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup> But Stephen 
                <italic toggle="yes">et al</italic> measured DNA integration in normal mammalian liver wherein the majority of hepatocytes are quiescent and very few cells are in S-phase or are actively dividing.
                <sup>
                    <xref ref-type="bibr" rid="ref25">25</xref>
                </sup> Hence the low rate of integration of replication-deficient adenovirus vectors in hepatocytes may be secondary to low percentage of hepatocytes being in S-phase.
                <sup>
                    <xref ref-type="bibr" rid="ref25">25</xref>
                </sup> Moreover, the viral vector induced insertional mutagenesis and consequent neoplasia&#x2019;s were evident in rapidly dividing hematopoietic lineages in kids.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> A more appropriate model to measure the integration rate of replication-deficient adenovirus vectors would be rapidly dividing cells like hematopoietic cells and gastrointestinal epithelial cells, instead of mice hepatocytes. In-addition, the fact that millions of people have received the viral vector vaccines, increases the probability of integration with an increased number of subjects. Moreover, since children are growing and have greater percentage of cells which are dividing than adults, the probability of integrational mutagenesis occurring in children should be higher than the adults.</p>
            <p>While the jury is still out regarding the occurrence of the viral vector vaccine associated random insertional mutagenesis, extreme care should be exercised while recommending viral vector vaccine in children and infants, especially when alternative safer vaccines like mRNA vaccines and inactivated viral vaccines are available. Given the first case of leukemia was evident after three and half years of gene therapy (from three and half years to six years post gene therapy four out of nine infants developed leukemia), it&#x2019;s important to conduct long term safety studies for viral vector vaccines before recommending these viral vector vaccines in children.</p>
        </sec>
        <sec id="sec2">
            <title>Data availability</title>
            <p>No data.</p>
        </sec>
    </body>
    <back>
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    <sub-article article-type="reviewer-report" id="report258133">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.136810.r258133</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Vashishtha</surname>
                        <given-names>Vipin M</given-names>
                    </name>
                    <xref ref-type="aff" rid="r258133a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1097-117X</uri>
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Kumar</surname>
                        <given-names>Puneet</given-names>
                    </name>
                    <xref ref-type="aff" rid="r258133a2">2</xref>
                    <role>Co-referee</role>
                </contrib>
                <aff id="r258133a1">
                    <label>1</label>Mangla Hospital and Research Center, Bijnor,, Uttar Pradesh., India</aff>
                <aff id="r258133a2">
                    <label>2</label>Pediatrics, Kumar Child Clinic, Dwarka, Delhi, India</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>23</day>
                <month>4</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Vashishtha VM and Kumar P</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport258133" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.124602.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>We agree with the authors that the recommendation of vaccinating children below 5 years of age against Covid-19 is debatable. There is no unanimity as far as mandatory vaccination of healthy young children against Covid-19 is concerned. We know that the incidence of severe disease in young infants is extremely low. Most infants have asymptomatic disease. With the emergence of novel variants and improved testing, there has been a higher incidence of COVID-19 disease reported among children and neonates. Despite this, the proportion of young children with severe disease has not increased. &#x00a0;Even the incidence of MIS-C has decreased considerably since the advent of the Omicron variant.</p>
            <p> </p>
            <p> We also agree with the authors&#x2019; suggestion that there is a need to assess the long-term and short-term safety profile of viral vector vaccines in the population, especially the young pediatric population. Many national vaccine-recommending authorities have mentioned the risks of administering these viral vector Covid-19 vaccines in this age group. Similarly, the CDC though has recommended vaccination of young kids aged 6 months onwards, has not recommended viral vector vaccines for this category of children.</p>
            <p> </p>
            <p> Thrombosis with thrombocytopenia syndrome (TTS) has been reported in young adults following adenoviral-vector vaccines; however, there are no such reports in children.</p>
            <p> Rare cases of myocarditis and pericarditis have been reported after vaccination in older children and adolescents who received the mRNA vaccine. In these reports of myocarditis, the incidence was found to be higher after the second dose of the mRNA vaccine</p>
            <p> </p>
            <p> The main concern raised by the authors is related to the theoretical long-term risk of inadvertent insertion of viral vector DNA into the human DNA following vaccination. Earlier, at the time of the introduction of these viral vector vaccines, in some societies, people have become sensitized against the potential short- or long-term side effects of foreign DNA being injected into humans.</p>
            <p> Before debating the issue of SARS-CoV-2 vector vaccine-induced integration of viral DNA, let us first discuss the issue of whether the SARS-CoV-2 virus gets its DNA integrated into human host DNA during acute infection.</p>
            <p> </p>
            <p> We know some viruses insert their genetic material into the cells they infect, but it generally remains separate from the cell&#x2019;s DNA. During a viral infection, genetic material (DNA or RNA) from the virus is there inside our cells, but most viral infections don't then leave DNA that becomes part of the genome</p>
            <p> However, in certain cases, it happens. HIV, for instance, has a reverse transcriptase, which copies the viral genetic material back into the genome. But viruses like the coronavirus or influenza don't have that enzyme.</p>
            <p> However, one study indicated that SARS-CoV-2 RNAs can be reverse transcribed in human cells by reverse transcriptase (RT) &amp; that these DNA sequences can be integrated into the cell genome &amp; subsequently be transcribed.</p>
            <p> The authors emphasize that their results don&#x2019;t imply that SARS-CoV-2 establishes permanent genetic residence in human cells to keep pumping out new copies, as HIV does.</p>
            <p> </p>
            <p> A study published in 2021 showed that SARS-CoV-2 RNA can be reverse-transcribed and integrated into the genome of the infected cell and be expressed as chimeric transcripts fusing viral with cellular sequences (Zhang L ,et.al., 2021 [Ref: 1]). Other experts disbelieved this finding. They find that a very low frequency of identified chimeric events suggests that SARS-CoV-2 integration into the host genome is unlikely. (Parry R,et.al.,2021 [Ref: 2])</p>
            <p> However, some experts show that fragments of SARS-CoV-2&#x2019;s genome integrate. They observed that since it is all pieces of the coronaviral genome, it cannot lead to infectious RNA or DNA and therefore it is probably biologically a dead end. So, they conclude that this kind of integration would be extremely rare if it does indeed happen.</p>
            <p> </p>
            <p> So, there is still no unrefutable evidence of SARS-CoV-2 virus genome integration into human DNA following natural infection. The actual integration of viral DNA molecules and adenovirus vector DNA will likely be chance events whose frequency and epigenetic consequences cannot with certainty be assessed.&#x00a0;The extent to which adenoviral gene products might become co-expressed with the SARS-CoV-2 spike glycoprotein upon vector-vaccine injection into human deltoid muscles remains un-investigated.&#x00a0;</p>
            <p> </p>
            <p> Eventually, it will come down to weighing the possible risks of genomic insertions of vaccine-associated foreign DNA and unknown levels of vector-carried adenoviral gene expression versus protection against the dangers of Covid-19.&#x00a0;</p>
            <p> </p>
            <p> The extent to which adenoviral gene products might become co-expressed with the SARS-CoV-2 spike glycoprotein upon vector-vaccine injection into human deltoid muscles remains un-investigated. At present, we cannot gauge their possible effects on the human organism, if expressed.</p>
            <p> However, as stated above, the above apprehensions are only of theoretic considerations since viral vector vaccines are no longer promoted in the pediatric population owing to their association with some other serious risks like VITT and autoimmunity. However, the discussion is not completely superfluous since this risk may be associated with adults and elderly vaccinated people also.</p>
            <p> </p>
            <p> -Dr Puneet Kumar, MBBS</p>
            <p> -Dr Vipin M. Vashishtha, MBBS, MD</p>
            <p>Are arguments sufficiently supported by evidence from the published literature or by new data and results?</p>
            <p>Partly</p>
            <p>Is the conclusion balanced and justified on the basis of the presented arguments?</p>
            <p>Partly</p>
            <p>Is the rationale for commenting on the previous publication clearly described?</p>
            <p>Yes</p>
            <p>Are any opinions stated well-argued, clear and cogent?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Pediatrics, vaccines, immunology</p>
            <p>We confirm that we have read this submission and believe that we have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however we have significant reservations, as outlined above.</p>
        </body>
        <back>
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