<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.129987.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Effects of 
                    <italic>Ganoderma lucidum</italic>
                    <italic> </italic>on chemical-induced and bacterial-infected corneal ulceration of rabbits&#x2019; eyes</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 not approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Okenwa-Vincent</surname>
                        <given-names>Emmanuel</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-7366-3911</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Moogi</surname>
                        <given-names>Alphonsinah</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Odero</surname>
                        <given-names>Phenard</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Dania</surname>
                        <given-names>Afe</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-0055-7234</uri>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Mashige</surname>
                        <given-names>Khathutshelo</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8199-0891</uri>
                    <xref ref-type="aff" rid="a5">5</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Optometry and Vision Sciences, Kaimosi Friends University, Kaimosi, Vihiga County, 50309, Kenya</aff>
                <aff id="a2">
                    <label>2</label>Department of Optometry and Vision Sciences, Masinde Muliro University of Science and Technology, Kakamega, Kakamega County, 50200, Kenya</aff>
                <aff id="a3">
                    <label>3</label>Lions Sightfirst Eye hospital, Nairobi, Nairobi, Kenya</aff>
                <aff id="a4">
                    <label>4</label>Department of optometry, Abia State University, Uturu, Abia State, Nigeria</aff>
                <aff id="a5">
                    <label>5</label>Discipline of Optometry, University of KwaZulu-Natal, Durban 4000, Durban, 4000, South Africa</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:eokenwa@kafu.ac.ke">eokenwa@kafu.ac.ke</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>16</day>
                <month>2</month>
                <year>2023</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2023</year>
            </pub-date>
            <volume>12</volume>
            <elocation-id>185</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>6</day>
                    <month>2</month>
                    <year>2023</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Okenwa-Vincent E et al.</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/12-185/pdf"/>
            <abstract>
                <p>
                    <bold>Background:</bold> Corneal ulcerations pose risks to blindness, and their treatment presents huge challenges, in part due to increased resistance to anti-bacterial drugs, accessibility and cost issues, particularly in developing countries. This study investigated the pharmacological effect of 
                    <italic toggle="yes">Ganoderma Lucidum</italic>, on chemical-induced and bacterial-infected corneal ulceration of rabbits&#x2019; eyes.</p>
                <p>
                    <bold>Methods:</bold> This was a randomized-controlled experiment of 16 healthy New Zealand rabbits, randomly assigned into four groups (A&#x2013;D). The right eye cornea was injured using a drop of 1 Molar sodium hydroxide and followed by infection with 
                    <italic toggle="yes">Pseudomonas aeruginosa</italic> after 12 hours, in all groups except group A. Treatment with freshly prepared crude aqueous extract of 
                    <italic toggle="yes">G. lucidum</italic> (40 &#x03bc;g/mL) for groups A and B, the standard treatment protocol for group C, and atropine alone for group D commenced after 24 hours and continued every four hours for seven days. All data collected, pre-and post-tests, were analysed at &#x03b1;=0.05 using Wilcoxon signed-rank test for correlated variables and the Mann&#x2013;Whitney U test for independent variables.</p>
                <p>
                    <bold>Results:</bold> 
                    <italic toggle="yes">G. lucidum</italic> has significant clinical effects (74%) on corneal injury and ulcers (92%). The healing effects observed at the 168th hour were significantly better than those observed at the 24th hour (
                    <italic toggle="yes">p</italic>&lt;0.05). Although the difference between the healing effect of the standard treatment and the crude extract was not significant (
                    <italic toggle="yes">p</italic>&gt;0.05), the mean effect size was clinically significant (31%).</p>
                <p>
                    <bold>Conclusion:</bold> This study demonstrates the potential antimicrobial potential of 
                    <italic toggle="yes">G. lucidum.</italic> 
                    <italic toggle="yes">G. lucidum</italic> may provide an alternative treatment option for chemical-induced and bacterial-infected corneal ulcers, particularly in resource-constrained countries.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Ganoderma lucidum</kwd>
                <kwd>chemical-induced corneal ulcer</kwd>
                <kwd>bacterial-infected ulcer</kwd>
                <kwd>anti-inflammatory</kwd>
                <kwd>anti-infective</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec1">
            <title>Background</title>
            <p>Corneal ulcers are estimated to cause 7.2% of corneal blindness
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> and are thus a significant contributor to blindness. In Kenya, corneal injuries have been reported to account for an estimated 2.7% of corneal blindness.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> While corneal injuries are common, access to treatment and medical care is limited, and this may be due to a lack of awareness of treatment options, lack of accessibility and high cost.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> Lack of appropriate and prompt management of ulcers leads to poor wound healing and subsequent formation of scars, resulting in partial or total vision loss.</p>
            <p>Antibiotics act by interfering with the metabolic processes or with the organism&#x2019;s structures. However, there are growing concerns about the number of drug-resistant bacterial strains
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> and many disease conditions are becoming more difficult to treat due to the emergence of antibiotic-resistant bacteria.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup> In 2010, the World Health Organization (WHO) recommended that all countries implement control procedures to mitigate the effects of multi-drug-resistant bacteria.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> It emphasized the urgent need to identify alternative therapies against drug-resistant microorganisms in low- and middle-income countries, such as Kenya. In addition, Kenya has been reported to have a high utilization rate of unorthodox medical treatment due to challenges of access to orthodox medicine, cost and cultural beliefs.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
            </p>
            <p>A mushroom is a fruiting body of fungi that is non-photosynthetic and feeds on organic matter and plant organisms.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> 
                <italic toggle="yes">Ganoderma lucidum</italic> is a type of mushroom which has basidiocarp, mycelia and spores that contain approximately 400 different bioactive compounds.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> 
                <italic toggle="yes">G. lucidum</italic> as a mushroom is in the family of Ganodermataceae, a family consisting of a large group of tree fungi of the genus Ganoderma. 
                <italic toggle="yes">G. lucidum</italic> has been classified into Kingdom Fungi, Phylum Basidiomycota, Class Basidiomycetes, Sub-class Homobasidiomycetes, Order Polyporales, Family Ganodermataceae, Genus 
                <italic toggle="yes">Ganoderma</italic> and Species 
                <italic toggle="yes">lucidum.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> The mushroom has been reported to have several pharmacological effects, such as immunomodulation, analgesic, anti-atherosclerotic, anti-inflammatory and antibacterial, among other medicinal benefits to the human body.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> The antibacterial effect of 
                <italic toggle="yes">G. lucidum</italic> has been shown to have a healing effect on non-ocular related inflammatory injuries and infective ulcers in other parts of the human body.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> Many ulcerative conditions are becoming difficult to manage due to the increasing numbers of drug-resistant bacteria strains such as 
                <italic toggle="yes">Staphylococcus aureus, Pseudomonas pyocyanea, Streptococcus pneumoniae, Pseudomonas aureginosa.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> 
                <italic toggle="yes">G. lucidum</italic> has been proven to be effective in managing bacterial infections that have shown resistance,
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> with reports indicating it to be an effective alternative to treating bacterial infections and inflammatory injuries to the human body.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> 
                <italic toggle="yes">G. lucidum</italic> is commonly available in Kenya.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> This study aimed to investigate the effects of 
                <italic toggle="yes">G. lucidum</italic> on chemical-induced and bacterial-infected corneal ulcers in rabbits&#x2019; eyes. Furthermore, the study aimed to compare the effects of 
                <italic toggle="yes">G. lucidum</italic> with those of standard orthodox treatment approaches to chemical and bacterial corneal ulcers to establish a possible relatively cheaper alternative and/or complementary treatment to these corneal injuries.</p>
        </sec>
        <sec id="sec2" sec-type="methods">
            <title>Methods</title>
            <sec id="sec3">
                <title>Study design</title>
                <p>This randomized-controlled experiment was conducted in the animal house of Masinde Muliro University of Science and Technology (MMUST), Kakamega, Kenya, which is located in the western part of Kenya and 1 km from Kakamega central town. In this experiment, a pre-determined power analysis, assuming a large Cohen&#x2019;s d effect size, 0.8, required a minimum total sample size of 15 to elicit 80% power for a 2-tailed test hypothesis at &#x03b1;=0.05, to detect a 10% mean difference between two homogenous groups in comparison. In this regard, 16 healthy New Zealand rabbits weighing 1.5 kg to 2.0 kg, without gender bias, were purchased from the local Kakamega animal market and were adapted for two weeks. These were randomly allotted to four groups of four animals each in separate housing. Each group of four animals were housed in a standard size cage with a floor area of 7.5 square feet and at least 18 inches high. These were cleaned on a daily routine, throughout the experiment. During the period of adaptation, they were dewormed with piperazine
                    <sup>&#x00ae;</sup> (anti-helmintic drug), fed with Amilyte
                    <sup>&#x00ae;</sup> food supplement &#x2013; an anti-stress agent, as well as Bovitam
                    <sup>&#x00ae;</sup> &#x2013; a multivitamin. The animals were fed with pellets, elephant grass, cabbages (
                    <italic toggle="yes">Brassica oleracea var.</italic> 
                    <italic toggle="yes">capitata</italic> L) and clean water for drinking. Before the commencement of the experiment, each animal was pre-tested for normal physiological functions, such as the eyelid, lacrimation and corneal statuses, and also re-tested 12 hours after the introduction of corneal injury for changes from the baseline physiological findings. The rabbits, before grouping, were labelled 1 to 16 and then randomly assigned to four groups of four animals each as follows: A: Experiment 1; B: Experiment 2; C: Positive control; and D: Negative control. This random assignment to groups was done using a computer-generated random system
                    <sup>
                        <xref ref-type="bibr" rid="ref15">15</xref>
                    </sup> which was without bias to the gender or weight of the rabbits. All animals included in the experiment had equal physiological characteristics as per the baseline pretesting conducted.</p>
                <p>Group A: Experimental group 1. The rabbits were treated with 
                    <italic toggle="yes">G. lucidum</italic> extracts following exposure of their cornea to a chemical-induced injury.</p>
                <p>Group B: Experimental group 2. The rabbits were treated with 
                    <italic toggle="yes">G. lucidum</italic> extracts following exposure of their cornea to a chemical injury and the subsequent infection with 
                    <italic toggle="yes">P. aeruginosa.</italic>
                </p>
                <p>Group C: Positive control group. The rabbits were treated with a standard treatment approach for corneal ulceration, that being two hourly drops of fluoroquinolones (ciprofloxacin), eight hourly atropine sulfate and four hourly betamethasone ophthalmic formulations.</p>
                <p>Group D: Negative control group. The rabbits received eight hourly drops of atropine sulphate, both as a placebo and to relieve the pain, without the intention of providing normal treatment.</p>
            </sec>
            <sec id="sec4">
                <title>Data collection instruments</title>
                <p>Instruments for data collection included the pen torch, a magnifying loupe, Keeler
                    <sup>&#x00ae;</sup> ophthalmoscope, 2-mL hypodermic syringes and needles, sample tubes, micropipettes and pipettes. Others included beakers, spatulas, a weighing scale, a water bath, a mortar and pestle, a sterilized laboratory grinder, Turtle stand, What-man
                    <sup>&#x00ae;</sup> filter paper, Dettol
                    <sup>&#x00ae;</sup>, gloves, a small bucket with a cover, as well as Methylated spirit, Vaseline
                    <sup>&#x00ae;</sup> jelly, a razor blade and cotton wool. Dean&#x2013;Stark apparatus, clean distilled water, double pocket condenser, a 5L-3-necked round-bottomed flask, Ganoderma mushrooms and a camera were also required. Drugs used for this experiment were: freshly prepared crude aqueous extract of 
                    <italic toggle="yes">G. lucidum</italic>, tetracaine hydrochloride 0.5%, atropine sulfate 1%, Probeta-N
                    <sup>&#x00ae;</sup> (betamethasone-neomycin), Ceprolen
                    <sup>&#x00ae;</sup> (ciprofloxacin), Nepuscein
                    <sup>&#x00ae;</sup> (fluorescein) strips
                    <bold>,</bold> Bovitam
                    <sup>&#x00ae;</sup>, Amilyte
                    <sup>&#x00ae;</sup>, Piperazine
                    <sup>&#x00ae;</sup>, ketamine hydrochloride and 1 Molar sodium hydroxide.</p>
            </sec>
            <sec id="sec5">
                <title>Study procedure</title>
                <p>The experimental procedure employed in this study commenced with two weeks of acclimatization of all 16 animals as described previously above. Additionally, in other to minimize pain and suffering among the animals during the procedure, both systemic and topical anesthetics were used and each animal was taken to a separate room, out of sight of the other animals during each experimental procedure. Generally, the experimental procedure commenced with the use of systemic anesthesia (1 mL/50 mg of ketamine hydrochloride) which was injected intramuscularly into each of the rabbits in groups A, B, C and D. Five minutes later, two drops (1 mL of 0.5%) of tetracaine hydrochloride (topical anesthesia) was instilled into the right eye only, of each rabbit. Three to five minutes later, a corneal sensitivity test was performed on each rabbit using the cotton swab test to ensure that the right eye cornea of each rabbit was fully anaesthetized. For confirmation, the same procedure was done on the left eye to verify their response to the cotton tips rubbed on the cornea. Following confirmation of corneal anesthesia in the right eye, a drop of 0.2 mL/1 Molar sodium hydroxide (NaOH) was gently instilled on the central corneal surface using a cotton swab. At the same time, the corneal periphery and conjunctiva areas were guided from the spread of the chemical with another set of cotton wool swabs. The cotton swabs were placed around the limbus of the right eye, while the chemical was being allowed to soak into the corneal epithelium.</p>
                <p>This procedure was performed under minimal magnification, using a 10&#x00d7; magnifying loupe. The affected central cornea area was then assessed for successful induction of injury by applying a stain with a swipe of fluorescein strip and observing with the blue illumination of a Keeler
                    <sup>&#x00ae;</sup> professional ophthalmoscope under 20&#x00d7; magnification. The right eyes were padded and left for 12 hours and then observed again. Ocular manifestation (signs of inflammations and possible infections) following the induction of chemical injury was observed after 24 hours. The following parameters were used to assess for ocular manifestations: eyelid and conjunctival status, lacrimation, epithelial disruption, corneal fluorescein staining, photophobia (using a flashlight), corneal oedema and infiltrates. The ocular manifestations were consistently graded on a scale of 0 to 5 (0: normal/no change observed; 1: very mild; 2: mild; 3: moderate; 4: severe; and 5: very severe).
                    <sup>
                        <xref ref-type="bibr" rid="ref16">16</xref>
                    </sup> The rabbits in groups B, C and D were then infected with two drops of a laboratory-prepared solution of 
                    <italic toggle="yes">P. aeruginosa</italic> and padded for another 24 hours, after which they were examined for signs of active inflammation and infection, with heavy mucopurulent discharges and stuck eyelids being evident.</p>
                <p>The 
                    <italic toggle="yes">G. lucidum</italic> extracts used for the treatment of the animals in groups A and B were prepared by dissolving 65 g of cleaned pieces of the mushroom, ground to fine powder, in 5 L of distilled water in a hydro distillation process, using the Dean&#x2013;Stark apparatus. The process was set at 40&#x00b0;C and left to run for 9 h to obtain the saturated crude extract which was then stored at &#x2212;10&#x00b0;C before bioassay. After 24 hours, treatment commenced with the animals in groups A and B with the fresh crude aqueous extract of 
                    <italic toggle="yes">G. lucidum</italic> now formulated into ophthalmic suspension at a concentration of 40 &#x03bc;g/mL.
                    <sup>
                        <xref ref-type="bibr" rid="ref13">13</xref>
                    </sup> All the rabbits in the two groups were treated with 
                    <italic toggle="yes">G. lucidum</italic> extracts. Two drops of the suspension were instilled every two hours at the start, and then gradually tapered through seven days. Observed ocular changes following commencement of treatment were both photographed and recorded according to the stated grading system, both being taken systematically in an order of 1
                    <sup>st</sup> hour, through the 12
                    <sup>th</sup>, 24
                    <sup>th</sup>, 48
                    <sup>th</sup>, 72
                    <sup>nd</sup>, 96
                    <sup>th</sup>, 120
                    <sup>th</sup>, 144
                    <sup>th</sup> up to the 168
                    <sup>th</sup> hour. Treatment was tapered following noticeable improvement (possible healing) on the ocular inflammations and infections.</p>
                <p>Treatment of the animals in group C also commenced 24 hours following the induction of ulcers on the right eye cornea of each animal. A standard treatment protocol for chemical (alkaline) induced ocular injury and bacterial-induced corneal ulcers was employed. This consisted of two hourly drops of fluoroquinolone (ciprofloxacin), six hourly drops of corticosteroid (betamethasone) initiated after 24 hours of treatment with fluoroquinolone, and eight hourly drops of atropine sulphate 1%.
                    <sup>
                        <xref ref-type="bibr" rid="ref17">17</xref>
                    </sup>
                    <sup>,</sup>
                    <sup>
                        <xref ref-type="bibr" rid="ref18">18</xref>
                    </sup> These were gradually tapered following the observation of significant reductions in ocular inflammations and infections. As with the experiment groups, photo shoots and recordings according to the stated grading system were done starting after the 12
                    <sup>th</sup> hour of treatment with the standard protocol, through every 24 hours up to the 168
                    <sup>th</sup> hour. While no positive active treatment was given to the rabbits in group D, in line with the treatment schedule in groups A, B and C, cycloplegic agent (atropine sulfate 1%) was instilled topically (1 drop), four hourly on the right eye cornea of each rabbit. The use of the cycloplegic agent applied to the animals in group D was an interventional protocol introduced in other to minimize pain, suffering and distress for animals in this group that served as a negative control in the experimental design. Observations (photographs and recording of parameter changes) were done according to the schedules of groups A, B, and C.</p>
                <p>In keeping with ARRIVE guidelines on providing a humane endpoint for animals used for this experiment, a Veterinary expert from a local Agrovet store, was professionally engaged to euthanize all the rabbits at the end of the experiment period.</p>
            </sec>
            <sec id="sec6">
                <title>Data analysis</title>
                <p>All data collected pre- and post-experiment were entered for groups A, B, C, and D into a statistics software (SPSS, version 23) for analysis according to within and between groups comparison. The findings for ocular morphologic changes were entered quantitatively and coded on the grading scale of 0 to 5 based on severity,
                    <sup>
                        <xref ref-type="bibr" rid="ref16">16</xref>
                    </sup> with the findings in all groups being presented in tables. Considering the small sample size of this experiment, alternative non-parametric tests to paired t-tests and independent t-tests were used for statistical analysis of the results. All comparisons were made at &#x03b1;=0.05 (95% CI) using Wilcoxon signed-rank test for correlated (within groups) variables and the Mann&#x2013;Whitney U test for independent (between groups) variables.</p>
            </sec>
        </sec>
        <sec id="sec7" sec-type="results">
            <title>Results</title>
            <p>Data were collected from 16 healthy New Zealand rabbits weighing an average of 1.4&#x00b1;0.42 kg. Ocular parameters for various observations following treatment for 168 hours after the introduction of chemical injuries and subsequent infection with 
                <italic toggle="yes">P. aeruginosa</italic> were coded according to the grading scale of 0 to 5 and these are presented in 
                <xref ref-type="table" rid="T1">Tables 1</xref> to 
                <xref ref-type="table" rid="T4">4</xref>. 
                <xref ref-type="table" rid="T1">Table 1</xref> shows a comparison of the healing effects of 
                <italic toggle="yes">G. lucidum</italic> extract on various ocular parameters following induction of chemical injury, using 1 Molar sodium hydroxide, for animals in group A (experiment group 1) at two-time points: at the 24
                <sup>th</sup> and 168
                <sup>th</sup> hours of treatment. The statistical presentation shows that although treatment with 
                <italic toggle="yes">G. lucidum</italic> extract had a significant anti-inflammatory effect on just a few ocular structures: eyelid and conjunctival status changes, reduced lacrimation, reduced corneal staining and oedema, the clinical effect of treatment with the extract in all ocular structures observed were highly significant, particularly with the reduction in corneal infiltrates (effect size=74%). These pictural findings are shown in 
                <xref ref-type="fig" rid="f1">Figure 1</xref>.</p>
            <table-wrap id="T1" orientation="portrait" position="float">
                <label>Table 1. </label>
                <caption>
                    <title>Comparison of animals in group A at two-time points: 24 and 168 hours.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="4" valign="bottom">Rabbit numbers</th>
                            <th align="left" colspan="8" rowspan="1" valign="top">Group A</th>
                            <th align="left" colspan="1" rowspan="4" valign="bottom">P-value</th>
                            <th align="left" colspan="1" rowspan="4" valign="bottom">Effect size (%)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="8" rowspan="1" valign="top">Time point</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="4" rowspan="1" valign="top">24
                                <sup>th</sup> hour</th>
                            <th align="left" colspan="4" rowspan="1" valign="top">168
                                <sup>th</sup> hour</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">2</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">8</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">13</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">15</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">2</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">8</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">13</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">15</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Eyelid status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.004</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">30</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Conjunctival status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.008</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">38.45</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Lacrimation</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.02</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">46.75</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Epithelial eruption</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.368</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal staining</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.041</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">60</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Photophobia</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.19</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Discharge</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.926</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3.85</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal oedema</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.008</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">43.75</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal infiltrates</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.23</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">73.53</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Wilcoxon signed-rank test at &#x03b1;=0.05. 
                        <xref ref-type="table" rid="T1">Table 1</xref> shows the result of the effects of 
                        <italic toggle="yes">G. lucidum</italic> on the chemical-induced corneal injury when compared at two-time points between the 24
                        <sup>th</sup> and the 168
                        <sup>th</sup> hours, following the commencement of treatment with an extract of 
                        <italic toggle="yes">G. lucidum.</italic>
                    </p>
                </table-wrap-foot>
            </table-wrap>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Presentation of the effect of 
                        <italic toggle="yes">G. lucidum</italic> on the chemical-induced corneal injury on group A animals after 168
                        <sup>th</sup> hour of treatment.</title>
                    <p>As shown, animals in group A (
                        <italic toggle="yes">right</italic>) appeared to have healed, with fewer discharges, lacrimation and better corneal epithelial changes, after 168 hours of treatment with 
                        <italic toggle="yes">G. lucidum.</italic>
                    </p>
                </caption>
                <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/142714/5117a09e-0555-4f8c-b4d3-6593316ab5c2_figure1.gif"/>
            </fig>
            <p>
                <xref ref-type="table" rid="T2">Table 2</xref> shows the manifestations of various ocular parameters for animals in group B (experiment group 2) at the first 24
                <sup>th</sup> hour following injury with 1 Molar sodium hydroxide, and subsequent infection with 
                <italic toggle="yes">P. aeruginosa</italic> 12 hours thereafter (to induce bacterial ulcer), and at the last 168
                <sup>th</sup> hour of treatment with 
                <italic toggle="yes">G. lucidum.</italic> The results show that treatment with 
                <italic toggle="yes">G. lucidum</italic> extract had no significant difference (p&gt;0.05), in the statuses of most of the ocular parameters after the 168
                <sup>th</sup> hours, except for a significant reduction in photophobia and lacrimation (p&lt;0.05). However, the clinical effects of treatment with the extract of 
                <italic toggle="yes">G. lucidum</italic> for bacterial infected corneal ulcers in all ocular parameters observed were clinically significant (effect size&gt;5%), with reduction of ocular discharges being most significant (effect size=93%). This finding is also shown pictorially in 
                <xref ref-type="fig" rid="f2">Figure 2</xref>.</p>
            <table-wrap id="T2" orientation="portrait" position="float">
                <label>Table 2. </label>
                <caption>
                    <title>Comparison of animals in group B at two-time points: 24 and 168 hours.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="4" valign="bottom">Rabbit number</th>
                            <th align="left" colspan="8" rowspan="1" valign="top">Group B</th>
                            <th align="left" colspan="1" rowspan="4" valign="bottom">P-value</th>
                            <th align="left" colspan="1" rowspan="4" valign="bottom">Effect size (%)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="8" rowspan="1" valign="top">Time point</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="4" rowspan="1" valign="top">24
                                <sup>th</sup> hour</th>
                            <th align="left" colspan="4" rowspan="1" valign="top">168
                                <sup>th</sup> hour</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">3</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">7</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">12</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">16</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">3</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">7</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">12</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">16</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Eyelid status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.051</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">94.57</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Conjunctival status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.067</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">79</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Lacrimation</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.016</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Epithelial eruption</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.607</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal staining</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.607</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Photophobia</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.032</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">63.45</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Discharge</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.156</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">92.85</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal oedema</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.247</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">70</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal infiltrates</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.198</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">16.67</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Wilcoxon signed-rank test at &#x03b1;=0.05. 
                        <xref ref-type="table" rid="T2">Table 2</xref> shows the result of the effects of 
                        <italic toggle="yes">G. lucidum</italic> on ulcerating corneas chemically injured using a drop of sodium hydroxide (NaOH) and subsequently infected with laboratory-prepared 
                        <italic toggle="yes">P. aeruginosa</italic>, compared at two-time points between the 24
                        <sup>th</sup> and the 168
                        <sup>th</sup> hours, following commencement of treatment with extract of 
                        <italic toggle="yes">G. lucidum.</italic>
                    </p>
                </table-wrap-foot>
            </table-wrap>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Presentation of the effect of 
                        <italic toggle="yes">G. lucidum</italic> on chemical-induced corneal injury and subsequently infected with 
                        <italic toggle="yes">Pseudomonas aeruginosa</italic> on group B animals after 168
                        <sup>th</sup> hour of treatment.</title>
                    <p>As shown, animals in group B (
                        <italic toggle="yes">right</italic>) appeared to have healed better, with fewer discharges, lacrimation and better corneal epithelial changes, after 168 hours of treatment with 
                        <italic toggle="yes">G. lucidum.</italic>
                    </p>
                </caption>
                <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/142714/5117a09e-0555-4f8c-b4d3-6593316ab5c2_figure2.gif"/>
            </fig>
            <p>
                <xref ref-type="table" rid="T3">Table 3</xref> shows a comparison between manifestations of various ocular parameters for the animals in groups B and C after 168 hours of treatments with 
                <italic toggle="yes">G. lucidum</italic> in group B (experimental group 2) and the standard treatment protocol in group C (positive group). The results show that although treatment in group C had better clinical effects than in group B, the difference in the treatment was, nonetheless, not statistically significant (p&gt;0.05). This finding is also shown pictorially in 
                <xref ref-type="fig" rid="f3">Figure 3</xref>.</p>
            <table-wrap id="T3" orientation="portrait" position="float">
                <label>Table 3. </label>
                <caption>
                    <title>Comparison between animals in groups B and C after the 168
                        <sup>th</sup> hour.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="3" valign="bottom">Rabbit number</th>
                            <th align="left" colspan="8" rowspan="1" valign="top">Group comparison</th>
                            <th align="left" colspan="1" rowspan="3" valign="bottom">P-value</th>
                            <th align="left" colspan="1" rowspan="3" valign="bottom">Effect size (%)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="4" rowspan="1" valign="top">Group B</th>
                            <th align="left" colspan="4" rowspan="1" valign="top">Group C</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">3</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">7</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">12</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">16</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">6</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">10</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">11</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">14</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Eyelid status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.717</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">16.67</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Conjunctival status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.763</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">22.75</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Lacrimation</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.002</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">48.52</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Epithelial eruption</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.368</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal staining</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.368</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Photophobia</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.009</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">33.32</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Discharge</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.317</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal oedema</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.317</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal infiltrates</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.867</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">7.15</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Mann&#x2013;Whitney U test at &#x03b1;=0.05. 
                        <xref ref-type="table" rid="T3">Table 3</xref> shows the result of the comparison between the effects of 
                        <italic toggle="yes">G. lucidum</italic> (group B animals) and the standard treatment protocol (group C animals) on ulcerating corneas chemically injured using a drop of sodium hydroxide (NaOH) and subsequently infected with laboratory-prepared 
                        <italic toggle="yes">P. aeruginosa</italic>, after 168 hours of treatment in both groups.</p>
                </table-wrap-foot>
            </table-wrap>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <title>Presentation comparing the effect of 
                        <italic toggle="yes">G. lucidum</italic> on chemical-induced corneal injury and subsequently infected with 
                        <italic toggle="yes">Pseudomonas aeruginosa</italic> (group B animals), with control group C animals (
                        <italic toggle="yes">right</italic>), treated with standard treatment protocol after 168
                        <sup>th</sup> hour.</title>
                    <p>As shown, animals in group C (
                        <italic toggle="yes">right</italic>) did not physically appear (observation on burton blue lighting) to have healed better than group B animal (
                        <italic toggle="yes">left</italic>), after 168 hours of treatment with 
                        <italic toggle="yes">G. lucidum.</italic>
                    </p>
                </caption>
                <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/142714/5117a09e-0555-4f8c-b4d3-6593316ab5c2_figure3.gif"/>
            </fig>
            <p>
                <xref ref-type="table" rid="T4">Table 4</xref> shows a comparison between the manifestations of various ocular parameters for animals in group B (experiment group 2) and those in group D (negative control group) after 168 hours of treatments with 
                <italic toggle="yes">G. lucidum</italic> on the former (group B) and atropine alone for the latter (group D). The results show that the difference in the treatment in both groups was not statistically significant (p&gt;0.05). This finding is also shown pictorially in 
                <xref ref-type="fig" rid="f4">Figure 4</xref>.</p>
            <table-wrap id="T4" orientation="portrait" position="float">
                <label>Table 4. </label>
                <caption>
                    <title>Comparison between animals in groups B and D after the 168
                        <sup>th</sup> hour.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="3" valign="bottom">Rabbit number</th>
                            <th align="left" colspan="8" rowspan="1" valign="top">Group comparisons</th>
                            <th align="left" colspan="1" rowspan="3" valign="bottom">P-value</th>
                            <th align="left" colspan="1" rowspan="3" valign="bottom">Effect size (%)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="4" rowspan="1" valign="top">Group B</th>
                            <th align="left" colspan="4" rowspan="1" valign="top">Group D</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">3</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">7</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">12</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">16</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">1</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">4</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">5</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">9</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Eyelid status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.417</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">43.75</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Conjunctival status</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.202</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">80</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Lacrimation</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">_</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">_</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Epithelial eruption</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.317</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal staining</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.74</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">30</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Photophobia</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.74</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">30</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Discharge</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.607</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal oedema</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">_</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">_</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corneal infiltrates</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0.717</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">16.67</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <p>Mann&#x2013;Whitney U test at &#x03b1;=0.05. 
                        <xref ref-type="table" rid="T4">Table 4</xref> shows the result of the comparison between the effects of 
                        <italic toggle="yes">G. lucidum</italic> (group B animals) and atropine sulphate alone as negative control (group D animals) on ulcerating corneas chemically injured using a drop of sodium hydroxide (NaOH) and subsequently infected with laboratory prepared 
                        <italic toggle="yes">P. aeruginosa</italic>, after 168 hours of treatment in both groups.</p>
                </table-wrap-foot>
            </table-wrap>
            <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                <label>Figure 4. </label>
                <caption>
                    <title>Presentation comparing the effect of 
                        <italic toggle="yes">G. lucidum</italic> on chemical-induced corneal injury and subsequently infected with 
                        <italic toggle="yes">Pseudomonas aeruginosa</italic> (group B animals), with control group D animals (negative control group) after 168
                        <sup>th</sup> hour.</title>
                    <p>As shown, Group D animals (
                        <italic toggle="yes">right</italic>) appeared to have healed better.</p>
                </caption>
                <graphic id="gr4" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/142714/5117a09e-0555-4f8c-b4d3-6593316ab5c2_figure4.gif"/>
            </fig>
        </sec>
        <sec id="sec8" sec-type="discussion">
            <title>Discussion</title>
            <p>In this study, we found a progressively improved healing effect of the extract of 
                <italic toggle="yes">G. lucidum,</italic> from the first 24
                <sup>th</sup> hour to the 168
                <sup>th</sup> (seven days of treatment). The indices adopted for the study to show improvement in the healing process of a deliberately induced corneal injury and then subsequently infected using 
                <italic toggle="yes">P. aureginosa,</italic> a common, normal floral, but opportunistic microorganism, were eyelid status, conjunctival status, lacrimation, epithelial eruption, corneal staining, photophobia, ocular discharge, corneal oedema, and corneal infiltrates. In group A animals (
                <xref ref-type="table" rid="T1">Table 1</xref>), there were observable changes in this first experimental group exposed to chemical injury alone using 1 molar sodium hydroxide. Our findings showed that treatment with crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> had significant healing effects on just a few ocular parameters: eyelid status change, reduced lacrimation, reduced corneal staining and oedema. Nonetheless, there were improved clinical effects of treatment with the extract in observed ocular parameters as seen in 
                <xref ref-type="fig" rid="f1">Figure 1</xref>. This thus demonstrates that treatment with 
                <italic toggle="yes">G. lucidum</italic> after the 168
                <sup>th</sup> hour improved the corneal healing process following an induced chemical (alkaline) injury. However, as can be seen from 
                <xref ref-type="fig" rid="f1">Figure 1</xref>, and as is typical with most chemical injuries, specifically from sodium hydroxide that causes corneal damage through pH change, ulceration, proteolysis and collagen synthesis defects to the cornea, healing from such injuries takes time, often longer than 7 days to achieve significant physically observable signs of healing.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> This time limitation was a key challenge in this study. Still, and as noted by Singh,
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> chemical injuries, particularly those of alkaline origin, to the cornea are potentially blinding ocular injuries and constitute a true ocular emergency requiring immediate assessment and initiation of treatment.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> Our finding demonstrates that instituting treatment with an extract of 
                <italic toggle="yes">G. lucidum</italic> as early as within the first 24
                <sup>th</sup> hour of occurrence has the potential to prevent extensive and penetrating damage to the cornea and other ocular surface tissues that present a risk of irreversible vision loss.</p>
            <p>Furthermore, among animals in group B (experiment group 2), as shown in 
                <xref ref-type="table" rid="T2">Table 2</xref>, our finding demonstrates that treatment with crude extract of 
                <italic toggle="yes">G. lucidum</italic> did not significantly change the ocular morphology of most of the animals after the 168
                <sup>th</sup> hours, except for a significant reduction in photophobia and lacrimation. Even though the differences in the quantitative morphological parameters at the two-time points, following the initiation of treatment with the crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic>, compared were not significant, the converse (
                <xref ref-type="table" rid="T2">Table 2</xref>), was true for the clinical effects (effect size&gt;5%). This, therefore, implies that the clinical effect of treatment with crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> for bacterial infected corneal ulceration is significant. Additionally, the clinical (healing) effects were found to be most significant with a reduction of ocular discharges, a good morphological indication of a reduction in microbial load.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> This finding, also shown pictorially in 
                <xref ref-type="fig" rid="f2">Figure 2</xref>, confirmed findings of previous studies,
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> that the antibacterial effect of 
                <italic toggle="yes">G. lucidum</italic> on non-ocular related inflammatory injuries and infective ulcers in other parts of the human body is clinically effective. In addition, our finding demonstrates that 
                <italic toggle="yes">G. lucidum</italic> has proven to be effective in managing bacterial infections that have shown resistance,
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> as well as an effective alternative to treating bacterial infections and inflammatory injuries to the human body,
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> may as well be an effective alternative to the management of ulcerative conditions of the cornea resulting from bacterial infections.</p>
            <p>Our study also compared the treatment effect of the crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> with the existing standard treatment protocol for chemical (alkaline) induced ocular injury and bacterial-induced corneal ulcers consisting of two hourly drops of fluoroquinolone (ciprofloxacin), six hourly drops of corticosteroid (betamethasone), and eight hourly drops of atropine.
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup> We found that after the 168
                <sup>th</sup> hour of treatments, while animals in group C had better clinical healing (effect size&gt;5%)
                <italic toggle="yes">,</italic> the difference between the two treatment protocols was not statistically significant (p&gt;0.05) as can be seen in 
                <xref ref-type="table" rid="T3">Table 3</xref>. The implication of this finding, therefore, is a demonstration that treatment with the crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> may be an effective approach to the treatment of bacterial-induced corneal ulcerative and inflammatory injuries. This further justifies a previous finding on the healing effects of extracts of 
                <italic toggle="yes">G. lucidum</italic> on infective and inflammatory injuries to other non-ocular tissues of the human body.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup>
            </p>
            <p>Finally, we sort to further demonstrate the healing effects of crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> on ulcerative injuries to the cornea and other ocular adnexa. To do this, we compared the results, after 168 hours of treatment, of animals treated with the crude extract to those of a negative control group that only received atropine treatment (
                <xref ref-type="table" rid="T4">Table 4</xref>). As shown, even though we found no significant difference (p&gt;0.05) in the two groups, treatment with the crude extract showed less clinical healing effect (
                <xref ref-type="fig" rid="f4">Figure 4</xref>). This was an interesting finding of our study that the animals in group D (negative control) that were administered with atropine sulphate alone showed better clinical improvement than those treated with 
                <italic toggle="yes">G. lucidum.</italic> Atropine sulphate was purposively administered to control ciliary spasms in the eyes of the animals in the negative control group. It was interesting to observe that atropine (primarily a cycloplegic agent) also known to show anti-inflammatory secondary effects,
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> resulted in significantly better healing effects compared with the crude aqueous extract of 
                <italic toggle="yes">G. lucidum.</italic> This finding may explain the importance of introducing an anti-inflammatory treatment protocol as early as possible in the management of both chemical and bacteria-induced corneal ulcerations.</p>
            <p>To summarize, we note that there is a dearth of empirical knowledge on the ocular-related healing effects of extracts of 
                <italic toggle="yes">G. lucidum</italic> in literature to compare our findings with. Nonetheless, our study demonstrates an observable reduction in the severity of damages to the ocular adnexa from induced ulcerative chemical injury and bacterial infection. These reductions are evident from the positive changes in the ocular parameters affected following the induction of chemical injury and subsequent bacterial infection of the cornea. Specifically, we note a significant reduction in eyelid swelling and lacrimation in animals treated with 
                <italic toggle="yes">G. lucidum</italic> after 168 hours of treatment. This is evident with the animals in groups A and B, where the eyelid and conjunctival severity were significantly reduced progressively (
                <xref ref-type="fig" rid="f1">Figures 1</xref> and 
                <xref ref-type="fig" rid="f2">2</xref>). Although no significant change was noticeable in a few parameters (epithelial eruption, epithelial staining, corneal fluorescein staining, and corneal oedema), we found the clinical healing effects of the crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> extracts to be highly significant, particularly for the reductions observed with ocular discharges, photophobia and corneal infiltrations. This we found, while not consistent with the healing effect observed in a study on paw oedema following intra-muscular instillation of 
                <italic toggle="yes">G. lucidum,</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup> was nonetheless consistent with the healing effect observed in another study on gastric ulcers.
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup> Other studies that compared the clinical healing effects of extracts of 
                <italic toggle="yes">G. lucidum</italic> with commonly used antibiotics, such as gentamycin sulfate
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> and fluoroquinolones,
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> found it to be equally effective in other body structures. We found this to not be the case with ocular healing effects, as standard treatment with a combination of fluoroquinolone, corticosteroid and atropine sulfate, and even with using atropine sulphate alone, turned out to show better clinical effect than treatment with the crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> alone.</p>
        </sec>
        <sec id="sec9" sec-type="conclusion">
            <title>Conclusion</title>
            <p>Crude aqueous extracts of 
                <italic toggle="yes">G. lucidum</italic> have shown the potential to be an alternative treatment approach for chemical (alkaline) and bacterial (
                <italic toggle="yes">P. aeruginosa</italic>) induced corneal ulceration. The healing (anti-inflammatory and anti-infective) effects of 
                <italic toggle="yes">G. lucidum</italic> have shown clinically significant healing effects after 168 hours of treatment compared with that of 24 hours. Although the cornea of animals treated with standard protocol showed better clinical effects than those treated with 
                <italic toggle="yes">G. lucidum</italic>, the current investigation has shown the importance of the early institution of the anti-infective and anti-inflammatory protocol in the management of corneal ulcers. Therefore, 
                <italic toggle="yes">G. lucidum</italic>, where available, may be a useful anti-infective alternative for chemical-induced and bacterial-infected corneal ulcerative conditions. In this regard, therefore, our study notes that despite the limitation of time, crude aqueous extract of 
                <italic toggle="yes">G. lucidum</italic> has bioactive compounds that have the potential to be used as an alternative treatment approach for chemical-induced and bacterial-infected corneal ulcerations in resource-constrained settings. Hence, the study recommends further research to explore the anti-inflammatory potentials of crude extract 
                <italic toggle="yes">G. lucidum</italic> in population-controlled settings. The study further recommends research to characterize the bioactive compounds in the crude aqueous extract as well as cytotoxicity assay of the bioactive compounds in the crude aqueous extract, as with tests to demonstrate the effectivity levels of extracts of the mushroom from other less polar and non-polar solvents.</p>
        </sec>
        <sec id="sec10">
            <title>Declarations</title>
            <sec id="sec11">
                <title>Ethics approval and consent to participation</title>
                <p>Approval for this study was obtained from the Institutional Ethics Review Committee of Masinde Muliro University of Science and Technology (MMUST, IERC) (MMU/COR: 403009 (VOL. 1). This study was conducted per the ethical guideline of the Prevention of Cruelty to Animals Act of Kenya.
                    <sup>
                        <xref ref-type="bibr" rid="ref25">25</xref>
                    </sup>
                    <sup>,</sup>
                    <sup>
                        <xref ref-type="bibr" rid="ref26">26</xref>
                    </sup> Additionally, all methods applied in this study adhered to the Committee on Animal Research and Ethics&#x2019; guideline for ethical conduct in the care and use of animals, including responsible and ethical disposal of animals during clinical and laboratory research.
                    <sup>
                        <xref ref-type="bibr" rid="ref27">27</xref>
                    </sup> All procedures in this study were conducted and reported in accordance with ARRIVE guidelines.</p>
            </sec>
            <sec id="sec12">
                <title>Consent to participate</title>
                <p>Not applicable.</p>
            </sec>
            <sec id="sec13">
                <title>Consent for publication</title>
                <p>Not applicable.</p>
            </sec>
        </sec>
        <sec id="sec16">
            <title>Authors&#x2019; contribution</title>
            <p>EOV was involved in the study design, data collection, data analysis, drafting and reviewing of the manuscript. AKM was involved in the study design, data collection, data analysis, drafting and reviewing of the manuscript. POO was involved in data collection, drafting and reviewing the manuscript. AVD was involved in drafting and reviewing the manuscript to its final stage. KPM was involved in drafting and significant review of the manuscript to its final stage. All authors have read and approved the final version of the manuscript.</p>
        </sec>
    </body>
    <back>
        <sec id="sec17" sec-type="data-availability">
            <title>Data availability</title>
            <sec id="sec18">
                <title>Underlying data</title>
                <p>Figshare: Underlying data for &#x2018;Effects of 
                    <italic toggle="yes">Ganoderma lucidum</italic> on chemical-induced and bacterial-infected corneal ulceration of rabbits&#x2019; eyes&#x2019;. 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.21789026.v1">https://doi.org/10.6084/m9.figshare.21789026.v1</ext-link>.
                    <sup>
                        <xref ref-type="bibr" rid="ref28">28</xref>
                    </sup>
                </p>
                <p>The project contains the following underlying data:
                    <list list-type="none">
                        <list-item>
                            <p>Effects of Ganoderma lucidum on Corneal Ulceration_Raw Data.csv</p>
                        </list-item>
                    </list>
</p>
                <p>Data are available under the terms of the 
                    <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/">Creative Commons Zero &#x2018;No rights reserved&#x2019; data waiver</ext-link> (CC0 1.0 Public domain dedication).</p>
            </sec>
        </sec>
        <ack>
            <title>Acknowledgements</title>
            <p>We acknowledge the support received from Masinde Muliro University&#x2019;s IERC, the Department of Pure and Applied Chemistry, and the Department of Medical Laboratory Science both of Masinde Muliro University. We also acknowledge the efforts of the optometry students and other university staff who assisted both in the data collection for this study and the handling and care of the animals during the duration of this study.</p>
        </ack>
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    <sub-article article-type="reviewer-report" id="report186813">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.142714.r186813</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Elmassry</surname>
                        <given-names>Ahmed</given-names>
                    </name>
                    <xref ref-type="aff" rid="r186813a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r186813a1">
                    <label>1</label>Alexandria University, Alexandria, Egypt</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>29</day>
                <month>8</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Elmassry A</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport186813" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.129987.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>reject</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The manuscript discusses the efficacy of 
                <italic>Ganodema lucidum</italic> Mushroom on chemical injury and bacterial infection of ulcerative keratitis on 16 New Zealand rabbits. 
                <list list-type="order">
                    <list-item>
                        <p>The number of eyes is too small to have a reliable statistical results.</p>
                    </list-item>
                    <list-item>
                        <p>The study on chemical and bacterial infections which is a mix and should be done only on one disease as there is a big difference between chemical injury and bacterial infection pathologies.</p>
                    </list-item>
                    <list-item>
                        <p>There is no definite staging of the chemical burn or stage of ulceration on the cornea.</p>
                    </list-item>
                    <list-item>
                        <p>The discussion is weak and needs to compare the studies with the present study.</p>
                    </list-item>
                    <list-item>
                        <p>The pictures are not clear in regards the stage of ulceration, or the chemical burn status.</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>No</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>No</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>No</p>
            <p>Reviewer Expertise:</p>
            <p>Infective keratitis, endophthalmitis, experimental animal corneal and ocular infections.</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to state that I do not consider it to be of an acceptable scientific standard, for reasons outlined above.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report192726">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.142714.r192726</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Shanks</surname>
                        <given-names>Robert M Q</given-names>
                    </name>
                    <xref ref-type="aff" rid="r192726a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-7699-5396</uri>
                </contrib>
                <aff id="r192726a1">
                    <label>1</label>University of Pittsburgh School of Medicine, Pittsburgh, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>8</day>
                <month>8</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Shanks RMQ</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport192726" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.129987.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>reject</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>Peer review of &#x201c;Effects of 
                <italic>Ganoderma lucidum</italic> on chemical-induced and bacterial-infected corneal ulceration of rabbits&#x2019; eyes&#x201d; by Okenwa-Vincent, 
                <italic>et al</italic> for consideration by F1000Research.</p>
            <p> </p>
            <p> This study tested whether an extract of the fungus 
                <italic>Ganoderma lucidum</italic> would be tolerated by the ocular surface of rabbits and whether it could reduce inflammation caused by sodium hydroxide burns and application of 
                <italic>Pseudomonas aeruginosa</italic>.</p>
            <p> </p>
            <p> While overall quite readable, there is some ambiguity that is discussed below.</p>
            <p> </p>
            <p> While the concept is intriguing, there are many major issues that are of concern and overwhelmingly undermine the study. For example, it appears that the manuscript describes a single experimental iteration rather than a reproduced experiment.</p>
            <p> </p>
            <p> 1. Major issue: while it is typical to have one or two citations and overstatement errors in a manuscript under review, this manuscript has too many. The source articles used to support claims in the introduction and throughout often had little or nothing to do with the statement. The references seem almost arbitrarily chosen. Only a subset of references were reviewed for matching the statement, so more may be misattributed.</p>
            <p> </p>
            <p> For example: 
                <list list-type="bullet">
                    <list-item>
                        <p>Introduction 
                            <italic>&#x201c;The antibacterial effect of G. lucidum has been shown to have a healing effect on non-ocular related inflammatory injuries and infective ulcers in other parts of the human body.11&#x201d; -&#x00a0;</italic>Reference 11 did not include 
                            <italic>G. lucidum</italic> extracts - please use the correct reference or remove the sentence.</p>
                    </list-item>
                    <list-item>
                        <p>Introduction 
                            <italic>&#x201c;G. lucidum has been proven to be effective in managing bacterial infections that have shown resistance,13 with reports indicating it to be an effective alternative to treating bacterial infections and inflammatory injuries to the human body.14&#x201d; -&#x00a0;</italic>Reference 13 uses 
                            <italic>G. lucidum in vitro</italic> antimicrobial tests, so the comment that it was useful in &#x201c;managing bacterial infections&#x201d; is an inaccurate statement. Reference 14 - this is an overstatement as the reported study was for cancer treatment and the impact on bacterial infections was not directly measured.</p>
                    </list-item>
                    <list-item>
                        <p>Discussion 
                            <italic>&#x201c;This finding, also shown pictorially in Figure 2, confirmed findings of previous studies,5,11,12 that the antibacterial effect of G. lucidum on non-ocular related inflammatory injuries and infective ulcers in other parts of the human body is clinically effective.&#x201d; -</italic> None of the cited references (5, 11, or 12) evaluated 
                            <italic>G. lucidum</italic> in inflammatory injuries or infective ulcers.</p>
                    </list-item>
                    <list-item>
                        <p>Discussion
                            <italic> &#x201c;This further justifies a previous finding on the healing effects of extracts of G. lucidum on infective and inflammatory injuries to other non-ocular tissues of the human body.14&#x201d;</italic>&#x00a0;- The referenced study did not deal infection, so it isn't clear that this paper supports the role of 
                            <italic>G. lucidum</italic> in infection.</p>
                    </list-item>
                </list> 2. Major issue &#x2013; concerning use of "clinical significance" versus "statistical significance". Because these are both used, it is at times difficult to know which is being discussed. Using a synonymous phrase such as &#x201c;clinically meaningful&#x201d; or similar should be used to improve clarity for the reader. &#x00a0;Moreover, the significant clinical effects are defined as a greater than 5% effect. This means that all but one observed data point in the entire study was considered clinically significant. It is not clear that a 5% or even a 25% change in discharge or lacrimation (etc) are that meaningful.</p>
            <p> </p>
            <p> 3. Major issue &#x2013; in the absence of a microbiological output, even a simple one, it cannot be determined whether an infection was established. It can be difficult to cause an ocular surface infection in the absence of a method to penetrate the cornea &#x2013; often by needle scarification or corneal injection. &#x00a0;</p>
            <p> </p>
            <p> 4. Major issue &#x2013; there was not a no treatment control for the NaOH and
                <italic> Pseudomonas aeruginosa</italic> application group. This is a limitation of the study and should be recognized in the discussion.</p>
            <p> </p>
            <p> 5. Major issue &#x2013; methods. There is some missing information in the methods section: 
                <list list-type="bullet">
                    <list-item>
                        <p>In the description of groups (it was good that this was included), please specify the groups that were treated with sodium hydroxide. It is mentioned for group B but not C or D in the text.</p>
                    </list-item>
                    <list-item>
                        <p>Please indicate the concentration of ciprofloxacin used and whether the formulation had an antimicrobial preservative such as benzalkonium chloride.</p>
                    </list-item>
                    <list-item>
                        <p>Information on the 
                            <italic>Pseudomonas </italic>strain and preparation are needed. What strain was used? Was it a keratitis isolate from human patients? How was the 
                            <italic>Pseudomonas </italic>prepared in the laboratory and was the concentration determined? - if yes, what concentration was used?</p>
                    </list-item>
                    <list-item>
                        <p>Please indicate the method of euthanasia.</p>
                    </list-item>
                    <list-item>
                        <p>It appears that the manuscript describes a single experimental iteration rather than a reproduced experiment.</p>
                    </list-item>
                </list> 6. Major concerns: Results section. 
                <list list-type="bullet">
                    <list-item>
                        <p>
                            <italic>&#x201c;the clinical effect of treatment with the extract in all ocular structures observed were highly significant, particularly with the reduction in corneal infiltrates (effect size=74%).&#x201d;</italic>&#x00a0; Please restate - the reduction in corneal infiltrates were not significantly different (p=0.23) - yet listed here as 
                            <italic>"observed were highly significant, particularly with reduction in corneal infiltrates".</italic>
                        </p>
                    </list-item>
                    <list-item>
                        <p>
                            <italic>&#x201c;The results show that although treatment in group C had better clinical effects than in group B, the difference in the treatment was, nonetheless, not statistically significant (p&gt;0.05). This finding is also shown pictorially in Figure 3.&#x201d; -</italic> While this matches the P-values listed in table 3, the P-value listed for corneal infiltrates 0.867 by Mann-Whitney U test did not appear to match the data. Upon analysis of the given numbers Mann-Whitney and found p=0.029 using Graphpad software. Please recheck the statistics in the tables and rephrase the statement to note that corneal infiltrates are significantly different.</p>
                    </list-item>
                    <list-item>
                        <p>Table 4, the Mann-Whitney value for corneal infiltrates again seems incorrect.</p>
                    </list-item>
                </list> 7. Discussion section 
                <italic>&#x201c;We found that after the 168th hour of treatments, while animals in group C had better clinical healing (effect size&gt;5%), the difference between the two treatment protocols was not statistically significant (p&gt;0.05) as can be seen in Table 3.&#x201d; -</italic>Please specify the group that is being compared to group C.</p>
            <p> </p>
            <p> 8. The clinical effect percentages should be better spelled out &#x2013; what is being compared to determine these effect sizes. In the abstract this comes across as ambiguous.</p>
            <p> </p>
            <p> 9. Minor &#x2013; methods. 
                <italic>&#x201c;All the rabbits in the two groups were treated with G. lucidum extracts.&#x201d;</italic> Please define the groups that are being mentioned.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>No</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Partly</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Ocular microbiology, bacteriology, ocular host-pathogen interactions, molecular pathogenesis</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to state that I do not consider it to be of an acceptable scientific standard, for reasons outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment10043-192726">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Okenwa-Vincent</surname>
                            <given-names>Emmanuel</given-names>
                        </name>
                        <aff>Kaimosi Friends University, Kenya</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>We have no competing interest to declare</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>8</day>
                    <month>8</month>
                    <year>2023</year>
                </pub-date>
            </front-stub>
            <body>
                <p>On behalf of the co-authors of this article, i wish to appreciate the reviewer for reading and giving invaluable and useful comments and suggestions to improving the quality of our paper, titled: Effects of Ganoderma lucidum on chemical-induced and bacterial-infected corneal ulceration of rabbits&#x2019; eyes. While we await the rest of the reviewers' comments to be published, we wish to affirm that we have noted and will take all the comments and points for improvements made to the different section of the article in our revised and subsequent versions of the article. Thank you once again for the positive comments.</p>
            </body>
        </sub-article>
    </sub-article>
</article>
