<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="review-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.134890.2</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Review</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Association of melatonin receptor 1 A with litter size in sheep: A review</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 2; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Abuzahra</surname>
                        <given-names>Mutasem</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-7186-5410</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Wijayanti</surname>
                        <given-names>Dwi</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-7295-8419</uri>
                    <xref ref-type="aff" rid="a2">2</xref>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Effendi</surname>
                        <given-names>Mustofa Helmi</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Mustofa</surname>
                        <given-names>Imam</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-4543-1659</uri>
                    <xref ref-type="aff" rid="a5">5</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Lamid</surname>
                        <given-names>Mirni</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <xref ref-type="aff" rid="a6">6</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Veterinary Medicine, Universitas Airlangga, Surabaya, Indonesia</aff>
                <aff id="a2">
                    <label>2</label>Department of Animal Science, Perjuangan University of Tasikmalaya, Tasikmalaya, West Java, 46115, Indonesia</aff>
                <aff id="a3">
                    <label>3</label>College of Animal Science and Technology, Northwest A&amp;F University, Yangling, Shaanxi, 712100, China</aff>
                <aff id="a4">
                    <label>4</label>Department of Veterinary Public Health, Faculty of Veterinary Medicine, Universitas Airlangga, Surabaya, Indonesia</aff>
                <aff id="a5">
                    <label>5</label>Department of Veterinary Reproduction, Faculty of Veterinary Medicine, Universitas Airlangga, Surabaya, Indonesia</aff>
                <aff id="a6">
                    <label>6</label>Department of Animal Husbandry, Universitas Airlangga, Surabaya, East Java, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:mheffendi@yahoo.com">mheffendi@yahoo.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>22</day>
                <month>1</month>
                <year>2024</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2023</year>
            </pub-date>
            <volume>12</volume>
            <elocation-id>900</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>4</day>
                    <month>1</month>
                    <year>2024</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Abuzahra M et al.</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/12-900/pdf"/>
            <abstract>
                <p>Sheep are a valuable livestock species worldwide, providing meat, milk, and various dairy products. This article aims to review the latest literature on the melatonin receptor 1A (MTNR1A) gene as a potential candidate gene associated with reproductive traits, particularly the litter size trait in sheep, by searching various databases for available literature. Studies have shown that different parts of the MTNR1A gene play various roles in sheep. By identifying marker genes associated with reproductive traits in MTNR1A polymorphisms linked to the litter size trait, breeders can achieve a faster selection response in sheep breeding by recognizing the genomic region where these genes are located and understanding their physiological functions. Therefore, highlighting the literature on these functions and their association with reproductive traits may contribute to improving the genetic makeup during sheep breeding.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>sheep; MTNR1A; litter size; polymorphism</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1">
                    <funding-source>Universitas Airlangga</funding-source>
                </award-group>
                <funding-statement>This study was funded in part by the Lembaga Penelitian dan Pengabdian Masyarakat, Universitas Airlangga, Indonesia in fiscal year 2023. </funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
        <notes>
            <sec sec-type="version-changes">
                <label>Revised</label>
                <title>Amendments from Version 1</title>
                <p>We have changed and updated some of the subtitle, such as adding new subtitle to the manuscript after the request of the reviewer to mention more about the secretion and structure of the gene, also some editing and arranging of some paragraphs .</p>
            </sec>
        </notes>
    </front>
    <body>
        <sec id="sec1" sec-type="intro">
            <title>Introduction</title>
            <p>As a result of the increasing demand for livestock production, there is a growing need for animals that are able to reproduce larger litter size.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> The ovulation rate, hormones, and growth factors all play a role in determining the litter size, which is one of the most important characteristics of fertility in animals.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup>
            </p>
            <p>It has been noted that in sheep breeds where estrous activity peaks during short days, variations in day length may function as a main factor determining seasonal variations in estrous activity.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> In the pineal gland, the indole hormone melatonin (MT) is produced,
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> which is linked to changes in light signals of the external natural environment.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
            </p>
            <p>The binding melatonin receptor, also known as MTNR, has a variety of biological purposes, some of the most important of which include the regulation of animal sexual behavior, reproduction, and circadian rhythm
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> a factor that has a positive influence on reproduction even when the night is longer.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> In most livestock species, mutations in the 
                <italic toggle="yes">MTNR1A</italic> gene are linked to ovarian function and litter size.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> Despite the fact that several scholars have investigated the aspects of growth that influence the reproductive characteristics of goats.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup>
            </p>
            <p>Melatonin has an effect on reproduction, which is mediated through receptors that are found in the hypophyseal pars tuberalis.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup> Melatonin has an effect on the pars tuberalis, which in turn has an effect on the seasonal reproductive activity of females in a number of different mammalian species.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> This includes the nuclei that are responsible for reproduction.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> Preceding studies have revealed that the polymorphisms in the 
                <italic toggle="yes">MTNR1A</italic> gene sequence have an effect on the ability of Rasa Aragonesa rams to reproduce both when they are young and when they are adults.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> In particular, the T/T or G/G genotype was shown to be connected with earlier ram-lamb mating activity, and adult rams that carried the T/T or G/G genotype exhibited the highest reproductive behavior in the spring.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup>
            </p>
            <p>Due to the fact that sheep have a clearly established circadian rhythm,
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> it is vitally necessary to investigate the mechanisms behind seasonal reproduction in this species. Melatonin production can be stimulated by exposing the eye to less light for longer periods of time. The pituitary gland&#x2019;s production of follicle-stimulating hormone and luteinizing hormone is influenced by the amount of melatonin that is present in the bloodstream.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> The purpose of this article is to review the most recent literature on this topic may help to shed light on the mechanisms behind seasonal reproduction in sheep.</p>
        </sec>
        <sec id="sec2">
            <title>
                <italic toggle="yes">MTNR1A</italic> location</title>
            <p>The gene known as 
                <italic toggle="yes">MTNR1A</italic> can be found in sheep on chromosome 26. It involves two exons that are split up by an intron that is nearly 22 kilobases (kb) in length and stretches from the position 17,354,820 to the position 17,377,973 in the Oar rambouillet v1.0 genome assembly. This region can be found between the two numbers 17,354,820 and 17,377,973. The length of exon I of the 
                <italic toggle="yes">MTNR1A</italic> gene is approximately 260 base pairs, whereas the length of exon II is around 970 base pairs.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> Ewes&#x2019; seasonal reproductive activity is linked to the presence of many polymorphic sites at the 
                <italic toggle="yes">MTNR1A</italic> locus, which can be found to be variable.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> Despite the fact that the ramifications of the 
                <italic toggle="yes">MTNR1A</italic> gene on reproductive seasonality have only been investigated to a limited extent up until this point, those studies have shown that these effects are tied to three specific mutations discovered in exon II at locations 606, 612, and 706,
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> only sheep of the Sarda and Aragonese breeds have had the remaining portions of this gene examined.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref25">25</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec3">
            <title>Mechanisms Involved in the Production and Secretion Control of Melatonin</title>
            <p>The pineal gland predominantly secretes melatonin during nocturnal hours, thereby designating this hormone as an inherent informant of the photoperiodic trend.
                <sup>
                    <xref ref-type="bibr" rid="ref27">26</xref>
                </sup> The circadian influence of melatonin is orchestrated through melatonin receptors located in the hypothalamic suprachiasmatic nucleus, the central hub of the circadian clock. Concurrently, the reproductive impacts of melatonin transpire within the premammillary hypothalamus. Melatonin exerts both its circadian and reproductive effects by engaging high-affinity G-protein coupled receptors.
                <sup>
                    <xref ref-type="bibr" rid="ref27">26</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref29">27</xref>
                </sup>
            </p>
            <p>The endocrine signal and circadian rhythm of melatonin secretion play a pivotal role in mediating the influence of photoperiod on the hypothalamus-pituitary axis, significantly contributing to the regulation of seasonal reproduction.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref29">27</xref>
                </sup> The reproductive impacts of melatonin are orchestrated through ligand-specific guanine nucleotide-binding protein (G-protein) coupled receptors situated in the hypophyseal pars tuberalis.
                <sup>
                    <xref ref-type="bibr" rid="ref29">27</xref>
                </sup> Retinal reception of light signals initiates the synthesis of melatonin by the pineal gland. In sheep, elevated melatonin levels coincide with a rapid increase in darkness (short photoperiod), thereby stimulating the pulsatile secretion of gonadotropin-releasing hormone (GnRH) and subsequently resulting in the secretion of luteinizing hormone (LH).
                <sup>
                    <xref ref-type="bibr" rid="ref30">28</xref>
                </sup>
            </p>
            <p>Melatonin, typically synthesized in the brain but also capable of secretion by granulosa cells, serves as a recognized modulator influencing follicle development, oocyte maturation, and embryo development.
                <sup>
                    <xref ref-type="bibr" rid="ref31">29</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref32">30</xref>
                </sup> In sheep, melatonin-treated ewes exhibit enhanced follicle development in culture compared to their untreated counterparts. Additionally, melatonin serves to modulate gene expression associated with steroidogenesis, differentiation, and luteinization of granulosa cells.
                <sup>
                    <xref ref-type="bibr" rid="ref33">31</xref>
                </sup> This hormone safeguards the integrity of oocytes and granulosa cells through its specific receptors, MTRN1A and MTRN1B2, by actively scavenging reactive oxygen species (ROS) and regulating apoptosis-related genes, thus preventing apoptosi.
                <sup>
                    <xref ref-type="bibr" rid="ref34">32</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec4">
            <title>
                <italic toggle="yes">MTNR1A</italic> role by season</title>
            <p>The duration of nocturnal melatonin secretion is affected by photoperiod variations between short and long days, which controls reproductive activity through the hypothalamic-pituitary-gonadal axis in seasonal sheep breeds located in areas with a temperate climate.
                <sup>
                    <xref ref-type="bibr" rid="ref27">26</xref>
                </sup> These sheep breeds are bred in climates that are considered to be moderate.
                <sup>
                    <xref ref-type="bibr" rid="ref35">33</xref>
                </sup> In the study of Mart&#x00ed;nez-Royo
                <sup>
                    <xref ref-type="bibr" rid="ref25">25</xref>
                </sup> observed that reproductive functions were present in Merino d&#x2019;Arles only in the month of April, as evidenced by varying progesterone concentrations. It was also shown that the single nucleotide polymorphism (SNP) known as rs430181568, which was formerly known as 612/MnlI, is connected with the reproductive patterns that are associated with the different seasons. When analyzing the patterns of ram-ewe mating in the Rasa Aragonesa breed, ewes with the A/A genotype at the rs406779174 gene showed higher fertility between January and August than those with G/A or G/G genotypes. Ewes mating to rams or other ewes had the same results.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> This was the case regardless of whether the ewes were mated to rams or other ewes.</p>
            <p>Both of these (606 and 612) loci have been linked in Indian breeds to ewes having lambs during times of the year when the ewes of these breeds would not normally be in oestrus.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> These two SNPs were found to be associated with the resumption of reproductive activities in the fall, following a period of seasonal anoestrus, in the animals studied, Slovenia is home to a variety of sheep breeds used for both dairy and meat production.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
            </p>
            <p>Melatonin production requires the participation of two distinct receptors; however, simply the 
                <italic toggle="yes">melatonin receptor subtype 1A</italic> (
                <italic toggle="yes">MTNR1A</italic>) is believed to be a potential candidate gene that mediates the photoperiodic reproductive seasonality in sheep.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> Certain genotypes have been linked to reproductive activity that occurs outside of the normal breeding season.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> Despite the fact that sheep milk is a highly significant produce for Greece and the raw material intended for a great deal of products with a protected designation of origin.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> Polymorphisms found within the 
                <italic toggle="yes">MTNR1A</italic> gene of the Sarda sheep breed, which has a period of anoestrus in the late winter/early spring, led to improvements in the return of reproductive function.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> However, in the Aragonesa breed, the polymorphism at position 612 was the sole one linked to a larger percentage of oestrous cyclic ewes between January and August.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
            </p>
            <p>The change in annual photoperiod, which governs the production of melatonin and is the primary environmental element that determines reproductive timing.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> Melatonin secretion is lower throughout the long photoperiodic phases of the year, whereas it is higher during the shorter photoperiodic periods. As a result, various biological rhythms exist, such as seasonal reproduction, which is regulated by photoperiodic patterns.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
            </p>
            <p>In small ruminants, the considerably higher nighttime MT concentrations that generally occur throughout the fall have a beneficial influence on reproductive activity,
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> Allelic variations at locations g.15099491C &gt; T and g.15099485 A &gt; G in the 
                <italic toggle="yes">MTNR1A</italic> gene exon II have been connected with the seasonal reproductive features in a variety of sheep breeds. These sites are located in the 
                <italic toggle="yes">MTNR1A</italic> gene,
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> only the g.15099491C &gt; T polymorphism was linked to a greater proportion of oestrous cyclic ewes in the Aragonesa breed between January and August.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> These findings suggest that there is a connection the 
                <italic toggle="yes">MTNR1A</italic> gene and reproduction season. Breed, management (including the presence or absence of males), and environmental conditions can all affect the timing of a gene polymorphism and the subsequent reproductive season. Thus, the length of time researchers observed subjects before drawing conclusions about the relationship between polymorphisms of this gene and the resumption of reproductive behavior is likely to be variable between studies.
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> The findings of all of this research suggested that there was a relationship between the 
                <italic toggle="yes">MTNR1A</italic> gene and the modulation of seasonal impacts on the reproduction of ewes in the breeds that were investigated.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec5">
            <title>
                <italic toggle="yes">MTNR1A</italic> in female reproduction</title>
            <p>After ovulation, progesterone is crucial for both the maintenance of pregnancy and the maintenance of a normal estrous cycle. As a further point, the granulosa cells in bigger ovarian follicles secrete the most progesterone.
                <sup>
                    <xref ref-type="bibr" rid="ref37">34</xref>
                </sup> Because melatonin causes an increase in the diameter of the corpus luteum, it also causes an increase in the concentration of plasma progesterone.
                <sup>
                    <xref ref-type="bibr" rid="ref38">35</xref>
                </sup> Melatonin might well be able to exercise direct control over the ovary due to the existence of melatonin receptors in ovarian follicles.
                <sup>
                    <xref ref-type="bibr" rid="ref39">36</xref>
                </sup> Melatonin has been shown to stimulate progesterone secretion in granulosa cells, and it appears that 
                <italic toggle="yes">MTNR1A</italic> plays a role in this process. However, blocking this receptor significantly reduces progesterone synthesis, melatonin&#x2019;s effect on progesterone production may be partly due to 
                <italic toggle="yes">MTNR1A</italic>, Consequently, melatonin&#x2019;s ability to affect reproductive behavior in sheep stems from its ability to inhibit apoptotic genes while simultaneously stimulating antioxidant genes and progesterone synthesis via the MT1 receptor (
                <italic toggle="yes">MTNR1A</italic>).
                <sup>
                    <xref ref-type="bibr" rid="ref40">37</xref>
                </sup>
            </p>
            <p>Due to the fact that melatonin is a hormone that is secreted by the body, its influence on the development of sheep oocytes in vitro is an excellent subject for research into the underlying molecular process. This was demonstrated by an experiment conducted in vitro, which also discovered that the addition of MT to the maturation process in vitro boosted the percentage of cultivated sheep oocytes that developed into blastocysts. The most valuable application of sheep MT is in scientific research.
                <sup>
                    <xref ref-type="bibr" rid="ref41">38</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec6">
            <title>MTNR1A gene and the reproductive performance of rams</title>
            <p>It is unclear whether the specific gene variations responsible for the seasonal pattern in male sexual behavior have any impact on ram reproduction. Melatonin, produced in the testes, interacts with melatonin receptors in various testicular locations.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> The reproductive behavior of female ewes is influenced by breed, season, and the presence of male rams. However, the application of uniting males with ewes in breeding populations is challenging due to the variable reproductive responses of ewes
                <sup>
                    <xref ref-type="bibr" rid="ref35">33</xref>
                </sup> Melatonin receptors MT1 (
                <italic toggle="yes">MTNR1A</italic>) and MT2 (
                <italic toggle="yes">MTNR1B</italic>) in the testes, accessory glands, and sperm suggest a direct effect of melatonin on the ram&#x2019;s reproductive tract.
                <sup>
                    <xref ref-type="bibr" rid="ref34">32</xref>
                </sup>
            </p>
            <p>Studies indicate that melatonin can be produced in the male reproductive tissues, particularly the testes, explaining the high levels found in ram seminal plasma, especially during the daytime.
                <sup>
                    <xref ref-type="bibr" rid="ref41">38</xref>
                </sup> Melatonin concentrations in seminal plasma and follicular fluid can exceed those in blood serum, suggesting a direct influence on sperm function.
                <sup>
                    <xref ref-type="bibr" rid="ref42">39</xref>
                </sup> Melatonin affects sperm capacitation and in vitro fertilization outcomes in rams. The effects depend on the dosage, with low doses promoting capacitation and high doses inhibiting it.
                <sup>
                    <xref ref-type="bibr" rid="ref42">39</xref>
                </sup> Melatonin acts by reducing cyclic adenosine monophosphate (cAMP) levels, suppressing protein kinase A (PKA) activity, a pathway involved in sperm capacitation.
                <sup>
                    <xref ref-type="bibr" rid="ref43">40</xref>
                </sup> Different subpopulations of ejaculated ram spermatozoa exhibit variations in melatonin receptor distribution, suggesting differences in their physiological states. Melatonin inhibits apoptosis and modifies sperm capacitation through the MT2 receptor.
                <sup>
                    <xref ref-type="bibr" rid="ref42">39</xref>
                </sup> Melatonin produced in the testes protects developing spermatozoa from oxidative damage, additionally, seasonal changes in ram seminal plasma composition and the impact of melatonin treatment have been observed.
                <sup>
                    <xref ref-type="bibr" rid="ref38">35</xref>
                </sup>
            </p>
            <p>Melatonin implantation in mature rams stimulates testicular growth, increases testosterone levels, improves semen quality, and enhances overall reproductive performance.
                <sup>
                    <xref ref-type="bibr" rid="ref44">41</xref>
                </sup> Melatonin directly affects sperm motility and other characteristics during non-breeding seasons.
                <sup>
                    <xref ref-type="bibr" rid="ref44">41</xref>
                </sup> Administering melatonin during the non-breeding season can improve testicular function beyond signaling the onset of the breeding season. Effective doses for enhancing testicular size in mature rams range from 36 to 54 mg.
                <sup>
                    <xref ref-type="bibr" rid="ref44">41</xref>
                </sup> Furthermore, melatonin protects testicular tissue and improves semen quality in heat-stressed male goats by reducing oxidative stress.
                <sup>
                    <xref ref-type="bibr" rid="ref45">42</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec7">
            <title>
                <italic toggle="yes">MTNR1A</italic> function</title>
            <p>In animals, two high-affinity melatonin receptors known as MT1 and MT2 have been discovered; nevertheless, only MT1 is important in the regulation of reproductive behaviors. Melatonin exerts its effects by binding to certain receptors that are situated in a number of organs, the nuclei of the central nervous system are responsible for regulating reproductive activity. Melatonin&#x2019;s actions are exerted.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
            </p>
            <p>Although the Pars Tuberalis (PT) contains a significant number of receptors, this formation is only slightly implicated in the regulation of reproduction.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup> However, the PT unquestionably plays important roles in the photoperiodic regulation of prolactin secretion.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup> However, only a tiny number of these receptors are found in the premamillary hypothalamus, which is the area of the brain responsible for reproduction when melatonin is present
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> is only slightly implicated in the reg.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> The MT1 receptor gene (
                <italic toggle="yes">MTNR1A</italic>) has been found to exist in a variety of organisms. It belongs to the class of proteins called G protein-coupled receptors. There are a variety of polymorphisms, in exon II of the 
                <italic toggle="yes">MTNR1A</italic> gene, that are known to influence the reproductive capabilities of different species according to the changing seasons.
                <sup>
                    <xref ref-type="bibr" rid="ref46">43</xref>
                </sup>
            </p>
            <p>
                <italic toggle="yes">MTNR1A</italic> and 
                <italic toggle="yes">MTNR1B</italic> are the two subtypes that can be distinguished when referring to melatonin receptors. The suprachiasmatic nucleus and pituitary nodules of the hypothalamus are the primary locations where 
                <italic toggle="yes">MTNR1A</italic> is found in animals.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> This location is significant since it is associated with the control of animal reproduction.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> The activity of 
                <italic toggle="yes">MTNR1B</italic> is not particularly high, however 
                <italic toggle="yes">MTNR1B</italic>-mediated MT may have an effect on insulin secretion.
                <sup>
                    <xref ref-type="bibr" rid="ref47">44</xref>
                </sup> Therefore, MT mostly joins with 
                <italic toggle="yes">MTNR1A</italic>, performing a particular function in the biological world.
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup>
            </p>
            <p>Melatonin activates hypothalamic receptors. The suprachiasmatic nucleus houses the circadian clock, and thepremamillary hypothalamus controls the hormone&#x2019;s reproductive actions.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> The premamillary hypothalamus has less melatonin MT1 receptors than the pars tuberalis.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> Sperm from non-seasonal animals have melatonin receptors. Their roles in spermatozoa may not be tied to seasonal fluctuations.
                <sup>
                    <xref ref-type="bibr" rid="ref42">39</xref>
                </sup> Protection of human sperm from oxidative damage and apoptosis has also been linked to the melatonin receptor MT1,
                <sup>
                    <xref ref-type="bibr" rid="ref48">45</xref>
                </sup> MT2, on the other hand, has been linked to the regulation of the capacity of male sperm to reproduce in vitro.
                <sup>
                    <xref ref-type="bibr" rid="ref49">46</xref>
                </sup> The plasma of rams from three different sheep breeds was shown to contain melatonin when the rams were exposed to an equatorial photoperiod that changes between wet and dry seasons,
                <sup>
                    <xref ref-type="bibr" rid="ref50">47</xref>
                </sup> while the source of this variation persists unidentified.
                <sup>
                    <xref ref-type="bibr" rid="ref34">32</xref>
                </sup>
            </p>
        </sec>
        <sec id="sec8">
            <title>Genetic association in the 
                <italic toggle="yes">MTNR1A</italic> gene</title>
            <p>Multiple variants of the MTNR1A gene have been discovered in sheep breeds worldwide, some of which have little impact on reproductive ability, while others can improve ovulation rates and litter sizes, or play an important role in male reproduction.</p>
            <p>He 
                <italic toggle="yes">et al.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> conducted an association analysis that revealed a notable influence of the mutation at g.15118756C &gt; T on litter size (first, second, and third parity) in Small Tail Han sheep (p &lt; 0.05). This observation suggests a fundamental contribution of polymorphisms in the ovine MTNR1A gene to the variability observed in sheep litter size. Three single nucleotide polymorphisms (G735A, G753A, and C845A) were detected in both Chinese Merino and Prolific Suffolk sheep, and an association study revealed a significant association (p &lt; 0.05) between these three SNPs and litter size.
                <sup>
                    <xref ref-type="bibr" rid="ref51">48</xref>
                </sup>
            </p>
            <p>Kianpoor 
                <italic toggle="yes">et al.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref52">49</xref>
                </sup> demonstrated a statistically significant relationship between the morphological characteristics and the genotypes of the MTNR1A gene. However, according to the results of Fathy 
                <italic toggle="yes">et al.</italic>,
                <sup>
                    <xref ref-type="bibr" rid="ref53">50</xref>
                </sup> the MTNR1A gene polymorphisms were not associated with most characteristics related to sperm quality and testicular size. Instead, the Ossimi and Barki breeds had the highest frequency of allele C, while the Rahmani breed had more allele T, with both Rahmani and Ossimi ewes with the MTNR1A SNP showing the shortest age at first lambing. Similarly, Mura 
                <italic toggle="yes">et al.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref54">51</xref>
                </sup> showed that rs430181568 and rs407388227 were linked to the fecundity of adult Sarda ewes. Moreover, the MTNR1A gene affects ram fertility in both juvenile and adult stages, as seen in the results of Vibha 
                <italic toggle="yes">et al.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref28">52</xref>
                </sup> and Mura 
                <italic toggle="yes">et al.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup> However, some studies, such as that of Z. Davari Varanlou 
                <italic toggle="yes">et al.</italic>,
                <sup>
                    <xref ref-type="bibr" rid="ref55">53</xref>
                </sup> did not find any association between this gene and reproductive or growth characteristics.</p>
            <p>The study discerns noteworthy correlations between specific SNPs and haplotypes, establishing significant associations with enhanced reproductive recovery and a reduction in days to lambing in Awassi ewes. A comprehensive analysis identified a total of 31 SNPs, inclusive of five missense mutations. Haplotypes H2, H3, and H4, alongside SNPs rs430181568 and rs40738822721 (hereafter referred to as SNP20 and SNP21), demonstrate a robust statistical correlation with decreased days to lambing (p &lt; 0.05). Importantly, SNP20 and SNP21 exhibit complete linkage, functionally consolidating into a singular marker. Ewes harboring the C allele at both polymorphic loci exhibit a significantly expedited reproductive recovery (p &lt; 0.05). These findings bear paramount significance for refining strategies in reproductive management and attaining heightened lambing efficiency in Awassi ewes.
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup>
            </p>
            <p>The study definitively establishes the impact of specific nucleotide sequences within the MTNR1A gene on reproductive functions in Mediterranean sheep. Distinct genotypes at specific gene positions correlate with increased fertility and reduced duration from ram placement to lambing across diverse sheep breeds. Particularly, SNPs at positions g.17355452 and g.17355458 significantly influence reproductive performance. In Bovska and Sarda, C/C and C/T genotypes at g.17355452, and in Istrian Pramenka, A/A genotype at g.17355458, are linked to heightened fertility and shorter duration to lambing. These findings underscore the influential role of MTNR1A gene sequences in shaping reproductive outcomes in Mediterranean sheep.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
            </p>
            <p>Further research suggests that both MTNR1A SNPs, g.15118683C &gt; T and g.15118951G &gt; A, may influence the timing of oestrus and pregnancy in certain sheep breeds, with Small Tail Han sheep carrying a homozygous mutation (TT) at the g.15118756C &gt; T locus exhibiting higher litter size.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> However, no correlation between genotype and litter size was.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> The ovulation rate, hormones, and growth factors all play a role in determining the litter size, which is one of the most important characteristics of fertility in animals.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup>
            </p>
            <p>Mura 
                <italic toggle="yes">et al.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup> reported the use of RsaI and MnlI restriction enzyme digestion to identify T606C and A612G polymorphisms in the amplicons. Ewes with the G/G, G/A, C/C, and C/T genotypes exhibited increased fecundity (p &lt; 0.05) and shorter intervals between ram introduction and parturition (p &lt; 0.05) compared to those with the A/A and T/T genotypes. The study revealed that mutations in the MTNR1A gene affected the timing of the Sarda sheep breed&#x2019;s return to reproduction in the spring. Furthermore, variations in the MTNR1A gene sequence impacted ram fertility during both juvenile and adult stages of life. T/T and G/G ram-lambs born in the fall had superior reproductive abilities, while T/T and G/G adult rams exhibited the most aggressive mating behavior.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> The SNP rs403212791, which alters the amino acid content from Arginine to Cysteine (R336C), may result in reproductive seasonality trait changes. The rs403212791 T allele in the MTNR1A gene was positively associated with the oestrus cycling months OCM values, which indicate behavioral indicators of oestrus in the Rasa Aragonesa breed, and negatively correlated with TDA values, which reflect seasonality attributes for ovarian function based on blood progesterone levels.
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup>
            </p>
            <p>Thus, it is crucial to further investigate the true involvement of MTNR1A through additional research with larger sample sizes and a wider variety of sheep breeds from around the world, as well as the mechanism of its SNPs in reproductive traits. MTNR1A gene has a significant effect on the reproductive traits of various sheep breeds. Different alleles and genotypes of this gene have been linked to variations in fecundity, timing of sexual maturation, litter size, and body weight. However, there is still a need for further research to confirm these findings and investigate the underlying mechanisms of the gene&#x2019;s effects. In terms of practical implications, the identified SNPs in the MTNR1A gene may be useful for selecting and breeding sheep with desirable reproductive traits. For example, ewes with certain genotypes may be preferred for earlier age at first lambing or higher fertility, while rams with specific alleles may have superior reproductive abilities or mating behavior. Additionally, the use of genetic markers and genotyping techniques can aid in the identification and preservation of rare or valuable sheep breeds.</p>
        </sec>
        <sec id="sec9" sec-type="conclusions">
            <title>Conclusions</title>
            <p>In summary, this review underscores the crucial role of the MTNR1A gene in sheep reproduction, presenting opportunities for genetic improvement in various breeds. Extensive studies on MTNR1A SNPs reveal associations with litter size, emphasizing its significance in male reproduction and fecundity. Limited but noteworthy correlations with reproductive attributes emphasize the need for ongoing research, particularly in unexplored gene regions like exon 1. Understanding these mechanisms is vital for optimizing breeding strategies and advancing sheep reproductive outcomes.</p>
        </sec>
    </body>
    <back>
        <sec id="sec10" sec-type="data-availability">
            <title>Data availability</title>
            <p>No data are associated with this article.</p>
        </sec>
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                        <etal/>
</person-group>:
                    <article-title>Association between MTNR1A and CYP19 Genes Polymorphisms and Economic Traits in Kurdi Sheep.</article-title>
                    <source>

                        <italic toggle="yes">Iran. J. Appl. Anim. Sci.</italic>
</source>
                    <year>2017</year>;<volume>7</volume>(<issue>1</issue>):<fpage>69</fpage>&#x2013;<lpage>74</lpage>.</mixed-citation>
            </ref>
        </ref-list>
    </back>
    <sub-article article-type="reviewer-report" id="report239571">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.161036.r239571</article-id>
            <title-group>
                <article-title>Reviewer response for version 2</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Nnabuike</surname>
                        <given-names>Ugbo Emmanuel</given-names>
                    </name>
                    <xref ref-type="aff" rid="r239571a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-0200-481X</uri>
                </contrib>
                <aff id="r239571a1">
                    <label>1</label>Department of Applied Microbiology, Faculty of Science, Ebonyi State University, Abakaliki, Ebonyi, Nigeria</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>5</day>
                <month>2</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Nnabuike UE</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport239571" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.134890.2"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The authors have made the corrections pointed out for this manuscript. I hereby approve.</p>
            <p>Is the review written in accessible language?</p>
            <p>Yes</p>
            <p>Are all factual statements correct and adequately supported by citations?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn appropriate in the context of the current research literature?</p>
            <p>Yes</p>
            <p>Is the topic of the review discussed comprehensively in the context of the current literature?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Medical Microbiology/Epidemiology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report239572">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.161036.r239572</article-id>
            <title-group>
                <article-title>Reviewer response for version 2</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>You</surname>
                        <given-names>Wenjing</given-names>
                    </name>
                    <xref ref-type="aff" rid="r239572a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8758-363X</uri>
                </contrib>
                <aff id="r239572a1">
                    <label>1</label>Zhejiang University, Hangzhou, China</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>31</day>
                <month>1</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 You W</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport239572" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.134890.2"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>All comments have been addressed. I have no more questions.</p>
            <p>Is the review written in accessible language?</p>
            <p>Yes</p>
            <p>Are all factual statements correct and adequately supported by citations?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn appropriate in the context of the current research literature?</p>
            <p>Yes</p>
            <p>Is the topic of the review discussed comprehensively in the context of the current literature?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Animal nutrition; metabolic disease</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report220370">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.147981.r220370</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>You</surname>
                        <given-names>Wenjing</given-names>
                    </name>
                    <xref ref-type="aff" rid="r220370a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8758-363X</uri>
                </contrib>
                <aff id="r220370a1">
                    <label>1</label>Zhejiang University, Hangzhou, China</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>21</day>
                <month>11</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 You W</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport220370" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.134890.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>Abuzahra et al. aimed to review the latest literature on the melatonin receptor 1A (MTNR1A) gene as a potential candidate gene associated with reproductive traits, particularly the litter size trait in sheep, by searching various databases for available literature. While the subject addressed is important and interesting, further details need to be clarified.</p>
            <p> </p>
            <p> The focus should be on melatonin and its receptor MTNR1A, whose roles, sources, structure, and characteristics are little described. Additional information regarding these aspects is needed.</p>
            <p> </p>
            <p> The authors should also consider describing the mechanisms involved in the production and secretion control of melatonin by the pineal gland, as well as provide an in-depth review of the mechanism by which melatonin regulates the release of follicle-stimulating hormone and luteinizing hormone through the hypothalamic-pituitary-gonadal axis, thereby regulating seasonal reproductive activity in mammals.</p>
            <p> </p>
            <p> The MTNR1A gene has different effects on reproductive traits in different sheep breeds and sexes, therefore, the section reviewing the genetic relevance of the MTNR1A gene in sheep breeds should be more logical and organized.</p>
            <p> </p>
            <p> Please provide the full name of the abbreviation, such as SNP, BW1, MM.</p>
            <p>Is the review written in accessible language?</p>
            <p>Yes</p>
            <p>Are all factual statements correct and adequately supported by citations?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn appropriate in the context of the current research literature?</p>
            <p>Yes</p>
            <p>Is the topic of the review discussed comprehensively in the context of the current literature?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Animal nutrition; metabolic disease</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment10935-220370">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>abuzahra</surname>
                            <given-names>mutasem</given-names>
                        </name>
                        <aff>Airlangga University, Indonesia</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>NA</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>22</day>
                    <month>1</month>
                    <year>2024</year>
                </pub-date>
            </front-stub>
            <body>
                <p>The focus should be on melatonin and its receptor MTNR1A, whose roles, sources, structure, and characteristics are little described. Additional information regarding these aspects is needed.</p>
                <p> </p>
                <p> 
                    <bold>Author: thank you for your suggestions, I have&#x00a0;added to the manuscript a&#x00a0;subtitle namely (Mechanisms Involved in the Production and Secretion Control of Melatonin) upon your request.</bold>
                </p>
                <p> </p>
                <p> </p>
                <p> The authors should also consider describing the mechanisms involved in the production and secretion control of melatonin by the pineal gland, as well as provide an in-depth review of the mechanism by which melatonin regulates the release of follicle-stimulating hormone and luteinizing hormone through the hypothalamic-pituitary-gonadal axis, thereby regulating seasonal reproductive activity in mammals.</p>
                <p> 
                    <bold>Author: thank you for your suggestions, also this part, I have added to the manuscript under a&#x00a0;subtitle namely (Mechanisms Involved in the Production and Secretion Control of Melatonin) upon your request</bold>
                </p>
                <p> </p>
                <p> The MTNR1A gene has different effects on reproductive traits in different sheep breeds and sexes, therefore, the section reviewing the genetic relevance of the MTNR1A gene in sheep breeds should be more logical and organized.</p>
                <p> 
                    <bold>Author: Thank you for your guidance. I have incorporated your suggestions into the manuscript, and I have reorganized the section on genetic relevance of the MTNR1A gene to enhance its logical flow, as per your recommendations.</bold>
                </p>
                <p> </p>
                <p> Please provide the full name of the abbreviation, such as SNP, BW1, MM</p>
                <p> 
                    <bold>Author: </bold>corrected upon your request</p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report220362">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.147981.r220362</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Nnabuike</surname>
                        <given-names>Ugbo Emmanuel</given-names>
                    </name>
                    <xref ref-type="aff" rid="r220362a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-0200-481X</uri>
                </contrib>
                <aff id="r220362a1">
                    <label>1</label>Department of Applied Microbiology, Faculty of Science, Ebonyi State University, Abakaliki, Ebonyi, Nigeria</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>20</day>
                <month>11</month>
                <year>2023</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2023 Nnabuike UE</copyright-statement>
                <copyright-year>2023</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport220362" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.134890.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The article addressed the purpose of the topic in the area of the function of MTNR 1A in the reproduction performance of animals. I hereby approve for publication.&#x00a0;</p>
            <p> </p>
            <p> I also suggest that the below comments should be addressed.</p>
            <p> Topic should be corrected to be (Association of melatonin receptor 1 A with litter size in sheep: A review).</p>
            <p> </p>
            <p> The sub-heading (MTNR 1 A gene and Reproductive Performance of Rams)</p>
            <p> Paragraph 2 (Recent studies, should be corrected to Studies). Since the Reference (35; is 2016 year) so it is not recent.</p>
            <p> </p>
            <p> I suggest you add all the conclusion together, not concluding in some of the sub-heading.</p>
            <p> Pull all the conclusion together to be in the conclusion part.</p>
            <p>Is the review written in accessible language?</p>
            <p>Yes</p>
            <p>Are all factual statements correct and adequately supported by citations?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn appropriate in the context of the current research literature?</p>
            <p>Yes</p>
            <p>Is the topic of the review discussed comprehensively in the context of the current literature?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Medical Microbiology/Epidemiology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment10934-220362">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>abuzahra</surname>
                            <given-names>mutasem</given-names>
                        </name>
                        <aff>Airlangga University, Indonesia</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>na</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>22</day>
                    <month>1</month>
                    <year>2024</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Topic should be corrected to be (Association of melatonin receptor 1 A with litter size in sheep: A review).</p>
                <p> 
                    <bold>Author: thank you for suggesting, I have corrected&#x00a0;according to your suggestion.</bold>
                </p>
                <p> </p>
                <p> The sub-heading (MTNR 1 A gene and Reproductive Performance of Rams)</p>
                <p> Paragraph 2 (Recent studies, should be corrected to Studies). Since the Reference (35; is 2016 year) so it is not recent.</p>
                <p> 
                    <bold>Author: corrected&#x00a0;upon your request</bold>
                </p>
                <p> </p>
                <p> I suggest you add all the conclusion together, not concluding in some of the sub-heading.</p>
                <p> Pull all the conclusion together to be in the conclusion part</p>
                <p> </p>
                <p> 
                    <bold>Author: corrected&#x00a0;upon your request, i gathered all together&#x00a0;</bold>i
                    <bold>n the conclusion part</bold>
                </p>
            </body>
        </sub-article>
    </sub-article>
</article>
