<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.150743.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Epidemiological characteristics and hospital outcomes of hospitalized Lassa fever cases during the 2022-2023 outbreak in Liberia</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Dwalu</surname>
                        <given-names>Emmanuel</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-2875-4130</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Tweya</surname>
                        <given-names>Hannock</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Beglaryan</surname>
                        <given-names>Mher</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Umeokonkwo</surname>
                        <given-names>Chukwuma D.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Jetoh</surname>
                        <given-names>Ralph W.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Shobayo</surname>
                        <given-names>Bode I.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-4864-0248</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Tarweh</surname>
                        <given-names>Fahn</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Owiti</surname>
                        <given-names>Philip</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a5">5</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Relan</surname>
                        <given-names>Pryanka</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9543-7891</uri>
                    <xref ref-type="aff" rid="a6">6</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Hassan</surname>
                        <given-names>Shermarke</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a7">7</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Goteh</surname>
                        <given-names>George W.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Lehyen</surname>
                        <given-names>Darius B.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0009-0008-9894-7409</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Ako-Egbe</surname>
                        <given-names>Louis</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-3269-8509</uri>
                    <xref ref-type="aff" rid="a8">8</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Kamara</surname>
                        <given-names>Ibrahim Franklyn</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1454-4650</uri>
                    <xref ref-type="aff" rid="a9">9</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Akpan</surname>
                        <given-names>Godwin E.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8204-9219</uri>
                    <xref ref-type="aff" rid="a10">10</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Adewuyi</surname>
                        <given-names>Peter</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a10">10</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Kpanyen</surname>
                        <given-names>Patrick N.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Vonhm</surname>
                        <given-names>Benjamin T.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Gilayeneh</surname>
                        <given-names>Julius S. M.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>National Public Health Institute of Liberia, Monrovia, Liberia</aff>
                <aff id="a2">
                    <label>2</label>International Training and Education Center for Health (I-TECH), Lilongwe, Malawi</aff>
                <aff id="a3">
                    <label>3</label>Tuberculosis Research and Prevention Centre, Yerevan 0014, Armenia</aff>
                <aff id="a4">
                    <label>4</label>African Field Epidemiology Network, Kampala, Central Region, Uganda</aff>
                <aff id="a5">
                    <label>5</label>Ministry of Health, Nairobi, Kenya</aff>
                <aff id="a6">
                    <label>6</label>Health Emergencies Programme, World Health Organization, Geneva, Switzerland</aff>
                <aff id="a7">
                    <label>7</label>Infectious Diseases Data Observatory, University of Oxford, Oxford, UK</aff>
                <aff id="a8">
                    <label>8</label>World Health Organization Country Office, Monrovia, Liberia</aff>
                <aff id="a9">
                    <label>9</label>Reproductive Maternal Newborn Child and Adolescent Health Unit, World Health Organization Country Office, Freetown, Sierra Leone</aff>
                <aff id="a10">
                    <label>10</label>African Field Epidemiology Network, Monrovia, Liberia</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:dwaluemmanuelf@gmail.com">dwaluemmanuelf@gmail.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>19</day>
                <month>6</month>
                <year>2024</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2024</year>
            </pub-date>
            <volume>13</volume>
            <elocation-id>661</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>7</day>
                    <month>6</month>
                    <year>2024</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Dwalu E et al.</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/3.0/igo/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution IGO Licence.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/13-661/pdf"/>
            <abstract>
                <sec>
                    <title>Background</title>
                    <p>Lassa fever is an endemic and immediately notifiable disease in Liberia, and one laboratory confirmed case constitutes an outbreak. We described the epidemiological characteristics and hospital outcome of Lassa fever cases hospitalized during the 2022-2023 outbreak in Liberia.</p>
                </sec>
                <sec>
                    <title>Methods</title>
                    <p>A cohort study was conducted using routine Lassa fever surveillance data from the 2022-2023 outbreak in Liberia. Descriptive statistics were used to summarize the data and log binomial regression to assess the association between epidemiological characteristics and mortality.</p>
                </sec>
                <sec>
                    <title>Results</title>
                    <p>A total of 439 suspected Lassa fever cases were reported. The median age was 22 (interquartile range: 10-33) years and 233 (53%) were women. The median number of days between symptom onset and admission was 4 (IQR 2-7). Of the 439 cases, 416 (95%) were tested for Lassa fever and 138 were confirmed with 33% positivity rate. The majority, 290 (69%), of confirmed cases were &lt;30 years, 78 (57%) were females, and 81 (59%) were reported during the dry season (October &#x2013; March). Contact with rodents, 94 (68%), was the commonest mode of exposure. Fever, 128 (93%), malaise, 121 (88%), headache, 114 (83%) and myalgia, 114 (83%) were the most common clinical characteristics. There were 83 (19%) deaths among hospitalized suspected Lassa fever cases - 42 deaths (15%) among 278 individuals who tested negative and 41 among confirmed cases with 30% case fatality rate (CFR). The highest CFR was recorded among those aged 40-49 years, 8 (67%) and those aged&#x2265;50, 5 (63%). There was no significant association between epidemiological characteristics and Lassa fever mortality.</p>
                </sec>
                <sec>
                    <title>Conclusions</title>
                    <p>The outbreak highlighted a high disease burden of Lassa fever with young adults disproportionately infected, and substantial mortality, even among those who tested negative for the virus. This underscores the urgent need for preventive measures like vaccines and health education campaigns.</p>
                </sec>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Liberia</kwd>
                <kwd>Lassa fever</kwd>
                <kwd>positivity rate</kwd>
                <kwd>case fatality rate</kwd>
                <kwd>outbreak</kwd>
                <kwd>Integrated Disease Surveillance and Response</kwd>
                <kwd>SORT IT</kwd>
                <kwd>operational research</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1">
                    <funding-source>The Special Programme for Research and Training in Tropical Diseases (TDR), Geneva, Switzerland</funding-source>
                    <award-id>HQTDR2422924-4.1-72863.</award-id>
                </award-group>
                <funding-statement>This SORT IT Programme was funded by the Special Programme for Research and Training in Tropical Diseases (TDR), Geneva, Switzerland (Grant Number HQTDR 2422924-4.1-72863. The APC was also funded by TDR. TDR is able to conduct its work thanks to the commitment and support from a variety of funders. A full list of TDR donors is available at: https://tdr.who.int/about-us/our-donors. </funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec5" sec-type="intro">
            <title>Introduction</title>
            <p>Lassa fever (LF) is a viral haemorrhagic fever caused by the Lassa virus, a member of arenavirus group.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> This zoonotic disease is primarily transmitted to humans through direct or indirect contact with the urine or feces of the infected Mastomys rats (Mastomys natalensis) during hunting or processing for consumption.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> The rats are the natural reservoir for the Lassa fever virus. Additionally, the virus may be transmitted from human to human through contact with an infected person's blood, faeces, or other bodily secretions.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> Pregnant women and children have the highest risk of contracting the disease.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> The incubation period for Lassa fever ranges from 2-21 days. A systematic review conducted in 2021 reported on clinical data, identifying fever (88%), headache (50%), vomiting (49%), abdominal pain (42%), and cough (35%) as the most frequently presenting symptoms in individuals suspected of having Lassa fever. The disease is diagnosed through a real-time polymerase chain reaction (RT-PCR) test and intravenous (IV) ribavirin is a recommended treatment.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> Additionally, oral ribavirin can be used for post-exposure prophylaxis. However, recent studies have reported contradictory results regarding the effectiveness of ribavirin, prompting need for further investigation.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup>
            </p>
            <p>Lassa fever is a significant global public health challenge, recognized by the World Health Organisation (WHO) as a priority disease for surveillance, research and vaccine development efforts.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> Endemic to various West African countries, including Guinea, Liberia, Nigeria, and Sierra Leone,
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> the disease is estimated to cause 100,000 to 300,000 new cases and 5,000-10,000 deaths annually.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> Lassa fever exhibits a seasonal pattern, with most cases reported during the dry season each year.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> The case fatality rate (CFR) among hospitalized patients is estimated to be between 15% and 20% but can reach 50% during epidemics.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
            </p>
            <p>In Liberia, Lassa fever is a notifiable disease and one laboratory confirmed case constitutes an outbreak. Liberia is experiencing its most protracted Lassa fever outbreak, which started in January 2022.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup> In June 2021, the National Integrated Disease Surveillance and Response (IDSR) Technical Guidelines were revised, incorporating an updated Lassa fever case definition. This coincided with efforts to improve case detection through healthcare worker training.
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> Despite these measures, crucial information such as the positivity rate, socio-demographic and clinical characteristics, mode of exposure to rodents, and CFR regarding the current outbreak remains largely unknown. Therefore, this study aimed to understand the 2022-2023 Lassa fever outbreak in Liberia by investigating characteristics of suspected and confirmed Lassa fever cases, mode of exposure, healthcare access (i.e. timelines of admission and treatment) and hospital outcomes.</p>
        </sec>
        <sec id="sec6" sec-type="methods">
            <title>Methods</title>
            <sec id="sec7">
                <title>Study design</title>
                <p>We conducted a cohort study in Liberia using routine national outbreak surveillance data of all suspected Lassa fever cases reported between January 2022 and December 2023.</p>
            </sec>
            <sec id="sec8">
                <title>Study setting</title>
                <p>
                    <bold>
                        <italic toggle="yes">General setting</italic>
                    </bold>
                </p>
                <p>Liberia has a population of over five million people. The country has a dry season (late October to March) and a rainy season (April to early October). Its capital city is Monrovia and the country is divided into 15 administrative units called counties, five health regions each comprising 3 counties, and 98 health districts.
                    <sup>
                        <xref ref-type="bibr" rid="ref18">18</xref>
                    </sup> The Liberian healthcare system operates at five levels: national, county, district, health facility, and community. There is a 3-tier system for service delivery: a primary level (primary health clinics), a secondary level (health center and county/regional hospitals) and a tertiary level (national specialized hospitals). Each level is staffed with designated healthcare workers including surveillance officers who coordinate disease routine surveillance activities. Liberia has 962 functional health facilities categorized as primary-level clinics, secondary-level health centers, and tertiary-level hospitals. The county hospitals have dedicated Lassa fever treatment centres. Health care services in public health facilities in Liberia are provided free of charge.</p>
                <p>
                    <bold>
                        <italic toggle="yes">Specific setting</italic>
                    </bold>
                </p>
                <p>Case detection for Lassa fever began at the community or health facility level. At the community level, community health workers identified potential Lassa fever cases. Potential cases were referred to the nearest health facility for verification. At the health facility level, clinicians used the case definition for Lassa fever to suspect cases based on symptoms. A suspected case was defined as a patient experiencing a fever lasting for 2-21 days (above 38&#x00b0;C) with one or more additional symptoms such as malaise, headache, or muscle pain. Alternatively, patients who had not responded to anti-malarial treatment within 48-72 hours or had a history of rodent contact were also considered suspected cases.
                    <sup>
                        <xref ref-type="bibr" rid="ref17">17</xref>
                    </sup> Exposure to Lassa virus was defined to encompass any contact with rodents, either directly (handling rodents or their food sources) or indirectly (through contaminated utensils, feces, urine, or consumption of rodent-borne food). Additionally, exposure included contact with bodily fluids from a person infected with the Lassa fever virus. A probable case was defined as a suspected case who has one or more of the following complications: hearing loss, facial or neck swelling, seizures/convulsions, restlessness, confusion, hypotension, abdominal bleeding. Once verified, demographic and clinical information of the suspected cases was recorded in the IDSR ledger. The IDSR case alert and laboratory submission forms were then completed and finally samples were collected.</p>
                <p>Samples were sent to the National Public Health Reference Laboratory (NPHRL) to confirm Lassa fever. Laboratory confirmation was performed by RT-PCR using a Real Star Lassa Virus RT-PCR kit. A confirmed case was defined as a suspected or probable case with a confirmed/positive laboratory test (positive IgM antibody, positive PCR or virus isolation) or epidemiologically linked to a laboratory confirmed case.
                    <sup>
                        <xref ref-type="bibr" rid="ref19">19</xref>
                    </sup> Once results were available, the NPHRL notified the National Public Health Institute of Liberia (NPHIL) and county teams. The county health teams, facilitated by the county surveillance officers (CSO), then sent the results to the district level through the district surveillance officers (DSO) who notified the health facilities.</p>
                <p>While awaiting the laboratory test results, the suspected cases were isolated and admitted to a treatment centre where IV Ribavirin treatment was initiated. Daily assessments were performed using charts to monitor the patients&#x2019; progress. On average, confirmed Lassa fever cases were treated with IV Ribavirin for 10 days depending on the patient's clinical evolution and recovery. Individuals with negative results were discharged immediately after the Ribavirin treatment was discontinued.</p>
                <p>The data from the IDSR ledger and case alert and laboratory paper-based forms were regularly entered into an MS Excel dataset containing the line-list of Lassa fever surveillance data in each district, then submitted to the county level and onward to the National Public Health Institute of Liberia.</p>
            </sec>
            <sec id="sec9">
                <title>Study population</title>
                <p>All suspected cases reported during the outbreaks in Liberia between January 2022 and December 2023 were included in the analysis.</p>
            </sec>
            <sec id="sec10">
                <title>Study data sources, variables, and validation</title>
                <p>We obtained data on Lassa fever cases from the Microsoft Excel national surveillance database maintained by the Division of Infectious Disease and Epidemiology, National Public Health Institute of Liberia, for the period 2022-2023. Due to incomplete information in some records we reconciled the data using the county surveillance database and selected treatment centers.</p>
            </sec>
            <sec id="sec11">
                <title>Statistical analysis</title>
                <p>We performed all statistical analyses using 
                    <ext-link ext-link-type="uri" xlink:href="https://www.cdc.gov/epiinfo/pc.html">Epi Info</ext-link> analysis software (version 7.2.5.0.) and 
                    <ext-link ext-link-type="uri" xlink:href="https://www.stata.com/">Stata</ext-link> v18.0 (open source alternative is 
                    <ext-link ext-link-type="uri" xlink:href="https://www.r-project.org/">R</ext-link>: The R Project for Statistical Computing), version 4.3.2. Descriptive statistics were used to summarize the data. Categorical variables, such as sex, county, and symptoms, were presented as frequencies and proportions. Continuous variables including age, time from symptom onset to admission and to ribavirin treatment were presented as medians with interquartile range (IQR). We estimated positivity rate and case fatality of Lassa fever: positivity rates were calculated by dividing the number of confirmed cases by the total number of individuals tested while the case fatality rate (CFR) was calculated by dividing the number of deaths by the total number of confirmed Lassa fever cases. The confirmed Lassa fever cases were plotted by county using Arc Geographic Information System Pro (
                    <ext-link ext-link-type="uri" xlink:href="https://www.esri.com/en-us/arcgis/products/arcgis-pro/overview">ArcGIS Pro</ext-link> 3.2.2) (open source alternative: 
                    <ext-link ext-link-type="uri" xlink:href="https://www.qgis.org/en/site/">QGIS</ext-link>, version 3.36.3) to visualize the geospatial distribution of the disease. An epidemic curve was constructed using the date of symptom onset and mortality for all confirmed cases. We used log binomial regression to assess the association between socio-demographics, clinical characteristics, and case fatality rates. Models&#x2019; results were presented as Risk Ratios (RR) with 95% confidence intervals (CI) and p-values &lt;0.05 were considered statistically significant.</p>
            </sec>
        </sec>
        <sec id="sec12" sec-type="results">
            <title>Results</title>
            <sec id="sec13">
                <title>Characteristics of the suspected lassa fever cases</title>
                <p>A total of 439 suspected Lassa fever cases were reported between January 2022 and December 2023 (
                    <xref ref-type="fig" rid="f1">Figure 1</xref>). The median age was 22 (IQR 10-33) years. The majority (66%, 290/439) of the suspected cases were below 30 years There were more women (53%, 233/439) than men. Occupation data was missing for 174 participants. Among the 265 with recorded occupations, students constituted the largest group (32%, 141/439) followed by business persons (12%, 51/439). Geographically, Bong County reported the highest number of suspected cases (44%, 192/439), followed by Grand Bassa County (20%, 89/439) and Nimba County (18%, 80/439) (
                    <xref ref-type="table" rid="T1">Table 1</xref>).</p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>Figure 1. </label>
                    <caption>
                        <title>Lassa fever diagnosis, treatment and hospital outcome, Liberia 2022-2023.</title>
                    </caption>
                    <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/165339/0662adc2-b90d-47e0-985d-48bf53a223c6_figure1.gif"/>
                </fig>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>Table 1. </label>
                    <caption>
                        <title>Characteristics and positivity rate for Lassa fever diagnosis using reverse transcription-polymerase chain reaction (RT-PCR), Liberia, 2022-2023.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Characteristics</th>
                                <th align="left" colspan="2" rowspan="1" valign="top">Total suspected
                                    <xref ref-type="table-fn" rid="tfn1">*</xref>
                                </th>
                                <th align="left" colspan="2" rowspan="1" valign="top">PT-PCR tested
                                    <xref ref-type="table-fn" rid="tfn1">*</xref>
                                </th>
                                <th align="left" colspan="2" rowspan="1" valign="top">Positivity rate
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn2">&#x00a5;</xref>
                                    </sup>
                                </th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top"/>
                                <th align="left" colspan="1" rowspan="1" valign="top">n</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">%</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">n</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">%</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">n</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">%</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>Total</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">439</td>
                                <td colspan="1" rowspan="1"/>
                                <td align="left" colspan="1" rowspan="1" valign="middle">416</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">95</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">138</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">33</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Age (years)</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">&#x2264;14</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">143</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">33</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">133</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">32</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">45</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">33</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">15-29</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">147</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">33</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">34</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">36</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">30-39</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">78</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">18</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">73</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">18</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">23</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">31</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">40-49</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">46</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">45</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">11</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">12</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">27</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">&#x2265;50</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">32</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Median age</td>
                                <td align="left" colspan="4" rowspan="1" valign="top">22 (IQR:10-33) Years</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>Gender</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Male</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">206</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">47</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">206</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">60</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">29</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Female</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">233</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">53</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">233</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">56</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">78</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">33</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>Occupation</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Business</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">51</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">11</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">51</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">12</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">15</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">29</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Farmer</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">33</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">31</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">26</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Housewife</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">16</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">16</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Student</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">141</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">32</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">137</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">33</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">50</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">36</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Tapper</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">19</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">19</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">11</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">58</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Others
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn3">&#x03b2;</xref>
                                    </sup>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">38</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Unknown</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">171</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">39</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">154</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">37</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">13</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>Reporting county</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Bong</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">192</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">44</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">171</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">41</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">60</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">35</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Grand Bassa</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">89</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">20</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">88</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">21</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">45</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">51</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Nimba</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">80</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">18</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">80</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">19</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">27</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">34</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Montserrado</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">56</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">13</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">56</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">13</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">9</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Others
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn3">&#x03b2;</xref>
                                    </sup>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">22</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">21</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn1">
                                <label>*</label>
                                <p>Number (and column-proportion) for characteristics and RT-PCR tested.</p>
                            </fn>
                            <fn id="tfn2">
                                <label>
                                    <sup>&#x00a5;</sup>
                                </label>
                                <p>Number (and row-proportion) positivity rate).</p>
                            </fn>
                            <fn id="tfn3">
                                <label>
                                    <italic toggle="yes">
                                        <sup>&#x03b2;</sup>
                                    </italic>
                                </label>
                                <p>Others (number of suspected cases): River Gee (n=5), Grand Kru (n=7), Maryland (n=3), Bomi (n=2), Lofa (n=2), Margibi (n=2), Sinoe (n=1).</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
            <sec id="sec14">
                <title>Time from symptom onset to hospital admission</title>
                <p>Among 439 individuals, about one quarter (26%, 116/439) were excluded due to missing data on date of symptom onset or admission (
                    <xref ref-type="table" rid="T2">Table 2</xref>). Among the 323 participants with recorded dates, the overall median number of days between symptom onset and admission was 4 (IQR 2-7). Median times by gender were similar (4.5 (IQR: 2-7) vs 4.0 (IQR 1-7) days). When stratified by county, Nimba had the shortest median time, with a median of &lt;1 day (IQR &lt; 1-1.5).</p>
                <table-wrap id="T2" orientation="portrait" position="float">
                    <label>Table 2. </label>
                    <caption>
                        <title>Time from Symptom Onset to Hospital Admission among suspected Lassa fever cases, Liberia, 2022-2023.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top"/>
                                <th align="left" colspan="1" rowspan="1" valign="top">Total</th>
                                <th align="left" colspan="3" rowspan="1" valign="top">Symptom onset to admission</th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top"/>
                                <th align="left" colspan="1" rowspan="1" valign="top"/>
                                <th align="left" colspan="1" rowspan="1" valign="top">n (%)</th>
                                <th align="left" colspan="2" rowspan="1" valign="top">Median (IQR)
                                    <xref ref-type="table-fn" rid="tfn4">*</xref>
                                </th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Overall</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>439</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>323 (74)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>4</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>(2-7)</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Age (years)</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">&lt;=14</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">143</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">103 (72)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(2-6)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">15-29</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">147</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">121 (82)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(1-7)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">30-39</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">78</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">52 (67)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(2-6.5)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">40-49</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">46</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">32 (70)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(1.5-7)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">50+</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">25</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">15 (60)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(0-8)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Gender</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Female</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">233</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">139 (60)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(2-7)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Male</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">206</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">174 (85)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(1-7)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">County</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Bong</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">192</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">108 (56)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(3-7)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Grand Bass</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">89</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">87 (98)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(2-7)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Nimba</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">80</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">76 (95)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(0-1.5)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Montserrado</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">56</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">52 (93)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">(2-7)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Other
                                    <xref ref-type="table-fn" rid="tfn5">
                                        <sup>&#x03b2;</sup>
                                    </xref>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn4">
                                <label>*</label>
                                <p>IQR=Interquartile range.</p>
                            </fn>
                            <fn id="tfn5">
                                <label>
                                    <sup>&#x03b2;</sup>
                                </label>
                                <p>Others (number of suspected cases): River Gee, Grand Kru, Maryland, Bomi, Lofa, Margibi, Sinoe.</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
            <sec id="sec15">
                <title>Positivity rate of lassa fever cases</title>
                <p>Of the 439 individuals suspected of Lassa fever, 437 specimens were collected and majority (95%, 416/439) were tested using RT-PCR test and 138 were Lassa fever positive. The overall positivity rate was 33% (138/416) (
                    <xref ref-type="fig" rid="f1">Figures 1</xref> &amp; 
                    <xref ref-type="fig" rid="f2">2</xref>; 
                    <xref ref-type="table" rid="T1">Table 1</xref>). Among suspected cases with recorded occupations, tappers had the highest positivity rate (58%, 11/19), followed by housewives (50%, 8/16). Positivity rates were highest in Grand Bassa County (51%, 45/88), followed by Bong (35%, 60/171) and Nimba Counties (34%, 27/80).</p>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>Figure 2. </label>
                    <caption>
                        <title>Geographical distribution of confirmed Lassa fever cases by reporting county, Liberia, 2022-2023.</title>
                    </caption>
                    <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/165339/0662adc2-b90d-47e0-985d-48bf53a223c6_figure2.gif"/>
                </fig>
            </sec>
            <sec id="sec16">
                <title>Ribavirin treatment among lassa fever cases</title>
                <p>Ribavirin treatment was administered to 57% (249/439) of hospitalized suspected Lassa fever cases (
                    <xref ref-type="fig" rid="f1">Figure 1</xref>).</p>
                <p>Ribavirin treatment was administered to 83% (114/138) of the confirmed Lassa fever cases and 46% (129/278) of those with negative PCR results (
                    <xref ref-type="fig" rid="f2">Figure 2</xref>).</p>
            </sec>
            <sec id="sec17">
                <title>Epi-curve of confirmed Lassa fever cases by reporting epi week and year</title>
                <p>The 2022 calendar year had more confirmed cases, accounting for over half (52%, 72/138) of the reported cases. More cases (59%, 81/138) clustered between epi-weeks 1-12 and 40-52, aligning with the dry season (October &#x2013; March) (
                    <xref ref-type="fig" rid="f3">Figure 3</xref>).</p>
                <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                    <label>Figure 3. </label>
                    <caption>
                        <title>Epidemic curve of confirmed Lassa fever cases and deaths by reporting week and year, Liberia, 2022-2023.</title>
                    </caption>
                    <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/165339/0662adc2-b90d-47e0-985d-48bf53a223c6_figure3.gif"/>
                </fig>
            </sec>
            <sec id="sec18">
                <title>Type of exposure and clinical characteristics among confirmed Lassa fever cases</title>
                <p>Rodent exposure was the most common type of contact (68%, 94/138) among confirmed Lassa fever cases. The most common clinical characteristic was fever (93%, 128/138), followed by malaise (88%, 121/138), headache (83%, 114/138), and myalgia (83%, 114/138). Less than 1% of patients reported hearing loss (
                    <xref ref-type="table" rid="T3">Table 3</xref>).</p>
                <table-wrap id="T3" orientation="portrait" position="float">
                    <label>Table 3. </label>
                    <caption>
                        <title>Exposure and clinical characteristics in confirmed Lassa fever cases, Liberia, 2022-2023 (N=138).</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Characteristics</th>
                                <th align="left" colspan="2" rowspan="1" valign="top">Confirmed N=138</th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Type of exposure</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">n</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">%</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Exposure to rodent</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">95</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">68</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Contact with confirmed Lf case</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">11</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">8</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Unknown</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">32</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">24</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Signs and symptoms (n=138)</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Fever &gt;38 &#x00b0;C</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">128</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">93</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Malaise</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">121</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">88</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Myalgia</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">114</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">83</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Headache</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">114</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">83</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Sore throat</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">86</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">62</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Diarrhea</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">85</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">62</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Red eyes</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">81</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">59</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Vomiting</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">77</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">56</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Chest pain</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">76</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">55</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Nausea</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">70</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">51</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Cough</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">55</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">40</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Bleeding</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">46</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">33</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Swollen face</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">43</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">31</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Swollen neck</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">26</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">19</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Hearing loss</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.7</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
            </sec>
            <sec id="sec19">
                <title>Mortality and case fatality rates</title>
                <p>There were 83 (19%) deaths among hospitalized suspected Lassa fever cases; 41 were among confirmed cases, with a 30% CFR. The remaining 42 deaths (15%) occurred among 278 individuals who tested negative (
                    <xref ref-type="fig" rid="f1">Figure 1</xref>, 
                    <xref ref-type="table" rid="T1">Tables 1</xref> &amp; 
                    <xref ref-type="table" rid="T4">4</xref>). The CFR varied significantly by age group (p-value=0.006). The highest CFR was observed in individuals aged 40-49 years (67%, 8/12), followed by those aged &#x2265;50 years (63%, 5/8). Lower CFRs were seen in the &#x2264;14-year-old group (27%, 12/45), the 30-39year old group (26%, 6/23), and the 15-29year old group (20%, 10/50).</p>
                <table-wrap id="T4" orientation="portrait" position="float">
                    <label>Table 4. </label>
                    <caption>
                        <title>Hospital outcome and factors associated with mortality among confirmed Lassa fever cases, Liberia, 2022-2023.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Variable</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Confirmed (N=138)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Deaths (CFR (%) (N=41)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">cRR (95% CI)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">P value</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">aRR (95% CI)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">P value</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Age (Yrs)</bold>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N (%)</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">&lt;30</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">95</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">22 (23)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Ref</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">&gt;=30</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">43</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">19 (44)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.9 (1.160- -3.136</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.011</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.2 (0.554-2.656)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.628</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Sex</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Male</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">60</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">20 (33)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.2 (0.742--2.065)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.413</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Female</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">78</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">21 (27)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Ref</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Reporting County</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Bong</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">60</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">14 (23)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Ref</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Grand Bassa</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">45</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">11 (24)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.0 (0.526-2.085)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.895</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Nimba</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">27</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">13 (48)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">2.0 (1.129- -3.771)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.019</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.1 (0.357-3.382)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.868</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Occupation (n=95)</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Business</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">15</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">6 (40)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Ref</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Farmer</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5 (63)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.5 (0.688-3.547)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.286</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Healthcare workers</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">House wife</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">8</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">2 (25)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.6 (0.161-2.412)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.495</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Student</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">50</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">10 (20)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.5 (0.217-1.148)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.102</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.6 (0.240-2.020)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.506</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Tapper</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">11</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4 (36)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.9 (0.335-2.465)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.851</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">
                                    <bold>Duration_ onset to admission (n=103)</bold>
                                </td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">&lt;7 days</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">59</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">19 (32)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Ref</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">&gt;=7 days</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">44</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">33 (75)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.7 (0.412-1.460)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.432</td>
                                <td colspan="1" rowspan="1"/>
                                <td colspan="1" rowspan="1"/>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <p>*CFR=case fatality rate;</p>
                        <p>cRR=crude risk ratio;</p>
                        <p>aRR=adjusted risk ratio;</p>
                        <p>CI=confidence interval;</p>
                        <p>Ref=reference point.</p>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
            <sec id="sec20">
                <title>Factors associated with mortality among confirmed lassa fever cases</title>
                <p>At bivariate level, we found significant associations between age &#x2265;30 (cRR=1.9, 95% CI=1.160-3.136, p=0.011), reporting county (Nimba (cRR=2.0, 95% CI=1.129-3.771, p=0.019) and Lassa fever mortality. When modelled using multiple logistic regression, none of these associations were significantly associated with Lassa fever mortality among confirmed cases (
                    <xref ref-type="table" rid="T4">Table 4</xref>).</p>
            </sec>
        </sec>
        <sec id="sec21" sec-type="discussion">
            <title>Discussion</title>
            <p>The study described the epidemiological characteristics and case fatality rates among Lassa fever cases hospitalized during the 2022-2023 outbreak in Liberia. Findings showed a substantial burden of Lassa fever in Liberia during the outbreak with high positivity rates (33%) and case fatality rates (30%), with an even higher CFR among the elderly population. Younger age groups were disproportionately affected. Furthermore, the dry season coincided with a surge in confirmed cases. Fever, headache and malaise were the most frequently reported symptoms, and rodent exposure was highest among the confirmed cases. Surprisingly, a high mortality rate (13%) was observed among hospitalized individuals without Lassa fever, highlighting challenges in diagnosis and in Lassa fever management.</p>
            <p>Similar to other studies,
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> the study found high testing and positivity rates. The high testing and positivity could be because Lassa fever is one of the immediately reportable priority diseases under surveillance in Liberia and an endemic disease. Additionally, strengthened surveillance systems at all healthcare delivery levels with assigned surveillance officers for the detection and reporting of suspected Lassa fever, a functional testing national public health reference laboratory and, most importantly, the revised 2021 case definition of Lassa fever all contributed to improved detection of Lassa fever.
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup>
            </p>
            <p>The study highlights that younger age groups are disproportionately affected by Lassa fever. This vulnerability is likely to be due to increased exposure to rodent reservoirs. Most confirmed cases reported direct or indirect contact with rodents suggesting exposure to rodent droppings or urine during outdoor activities and food handling. Similar to other studies in Liberia
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> and Nigeria,
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup> most of the cases were recorded in the dry season (the latter and earlier parts of the two years in the study period: October to March) with 2023 accounting for the highest burden. The seasonality of Lassa fever cases in West Africa's dry season is likely due to a combination of factors related to the behavior of the main reservoir, the Mastomys natalensis rodent. During the dry season, with less vegetation and food sources outside, these rodents are more likely to seek shelter and food inside homes, increasing their contact with humans. This could lead to more frequent interactions between rodents, potentially increasing the spread of the Lassa fever virus within the rodent population. Less plant cover during the dry season could make rodent burrows and movements more noticeable for hunting. A better cleaning environment both in the house and the outside environment might help to reduce the contact between rats and humans. Additionally, effective community infection prevention control programmes in endemic areas might be of help.</p>
            <p>Our study identified a high CFR of 33%, more than double the 15% reported by the WHO for the region. While this CFR is lower than those reported in Nigeria (60%)
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> and Sierra Leone (69%)
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> and slightly lower than a previous study in Liberia (40%), it remains a significant cause for concern. Furthermore, high CFRs were observed in both treated and untreated patients. The short time between symptom onset and hospital admission suggests that healthcare-seeking behaviors alone cannot fully explain the high CFR. Previous studies have raised concerns about the effectiveness of ribavirin treatment and its potential harm.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> The reliability of the human clinical trial data supporting ribavirin's use has also been questioned, with pre-clinical studies suggesting that current dosing regimens may not reliably inhibit Lassa fever virus replication.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> Similar to other studies, the CFR was higher among elderly people. However, the reasons for this are unclear, warranting further research in understanding the occurrence. Surprisingly, CFR was higher in Nimba, an endemic Lassa fever county, a finding similar to what was reported in a previous study.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> The high CFR in Nimba could be due to the fact that the county is endemic for Lassa fever, with the majority of cases detected at the health facility rather than through early community detection, which impacts on early treatment. The study highlights challenges in Lassa fever management. Suspected Lassa fever cases are admitted and begin ribavirin while waiting for test results. Some of the Lassa fever symptoms (fever and headache) overlap with common diseases like malaria, leading to unnecessary admissions and ribavirin use as well as delayed appropriate treatment. This is concerning, as a 13% mortality rate was observed among those who did not have Lassa fever which may be due to other undiagnosed infections. While the strategy aims to combat Lassa fever&#x2019;s high CFR, improvements in diagnosis and management are crucial.</p>
            <p>These findings have an important implication for the programme&#x2019;s practice and policy. Addressing the screening and management challenges surrounding Lassa fever requires a proactive shift towards preventive measures. Mass vaccination campaigns, although in their developmental stages, offer a promising avenue for mitigating the burden of Lassa fever. Initiatives by the WHO and Coalition for Epidemic Preparedness Innovations (CEPI) prioritize Lassa fever for vaccine development and enhanced surveillance efforts,
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup> signaling a step in the right direction. However, given the time frame for vaccine development and implementation, immediate action is warranted. Based on a clearer understanding of seasonal variations within Liberia and across West Africa, public health interventions like vector control programmes and year-round community education campaigns, intensified during the dry season when Lassa fever transmission peaks, can significantly enhance community awareness and prevention, thereby reducing mortality rates and easing the burden on healthcare systems. Implementing rodent-proofing measures can further reduce exposure risks.</p>
            <p>Our findings should be viewed with the following limitations: Firstly, there were incomplete data on duration from onset of symptoms to hospital admission. Exclusion of these records might have affected the estimation of the time from onset of symptoms to hospital admission with respect to socio-demographic characteristics. Secondly, our data was focused on facility-based rather than community-based surveillance, meaning that those who did not seek healthcare were not captured, and we might therefore have underestimated the number of Lassa fever cases. Despite these limitations, the study used surveillance data which reflect the program setting, making the findings useful to inform policy and programmes in Liberia and other comparable settings to prevent outbreaks of Lassa fever.</p>
        </sec>
        <sec id="sec22" sec-type="conclusions">
            <title>Conclusions</title>
            <p>This study showed a significant burden of Lassa fever in Liberia during the 2022-2023 outbreak, characterized by high positivity, high CFR, and a substantial mortality among those without the disease, highlighting the urgent need for proactive prevention measures such as vaccination campaigns and intensive public education. Furthermore, the CFR was high among the elderly population, warranting further investigation. Additionally, the incompleteness of some records highlights the need to strengthen data collection practices within healthcare facilities to ensure complete and accurate data for informed outbreak response efforts.</p>
            <sec id="sec23">
                <title>Ethics consideration</title>
                <p>Access to data for this study was granted by the National Public Health Institute of Liberia. Ethics approvals were obtained from University of Liberia Ethics Review Board on September 27, 2023 (protocol# 23-09-390) and the Ethics Advisory Group for the International Union Against Tuberculosis and Lung Disease, Paris, France, on August 9, 2024; (EAG# 24/23). Informed consent was not obtained as we used routine programme data, which was anonymized by delinking patient identifiers from the dataset.</p>
            </sec>
        </sec>
        <sec id="sec24">
            <title>Author contributions</title>
            <p>&#x201c;Conceptualization, E. D, R.W.J, B.I.S, H. T, F.T, P. O, M.B, I.F.K, G.W.G, P. K, D. B. L, L.A.E, P. R, S.H; B.T.V., J.S.M.G; methodology, E. D, H.T, P. O, M.B, C.D.U, R.W.J, B.I.S, F. T, P. A, G.W.G,D.B.L, L.A.E, P. R, S. H, B.T.V, P. K, P.A., I.F.K, J.S.M.G; software; validation, E. D, G.W.G; formal analysis, E. D, H.T, M. B, C.D.U, P.A., GEA; investigation; resources; data curation; writing&#x2014;original draft preparation, E. D, H.T, M. B, writing&#x2014;review and editing, E. D, H.T, F. T, P.O, C.D.U, B.T.V, M. B, B.I.S, P. K, P. A, L.A.E, P. R, S. H, I.F.K, GEA; visualization, G.E.A, E.D; supervision; project administration; funding acquisition. All authors have read and agreed to the last version of the manuscript.&#x201d;</p>
        </sec>
        <sec id="sec25">
            <title>Open access statement</title>
            <p>In accordance with WHO&#x2019;s open-access publication policy for all work funded by WHO or authored/co-authored by WHO staff members, WHO retains the copyright of this publication through a Creative Commons Attribution IGO license (
                <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/igo/legalcode">http://creativecommons.org/licenses/by/3.0/igo/legalcode</ext-link>) which permits unrestricted use, distribution and reproduction in any medium provided the original work is properly cited.</p>
        </sec>
    </body>
    <back>
        <sec id="sec28" sec-type="data-availability">
            <title>Data availability</title>
            <sec id="sec29">
                <title>Underlying data</title>
                <p>The dataset used for this study is available at the Division of Infectious Disease and Epidemiology, National Public Health Institute of Liberia and can be accessed upon request in line with the existing data request guide, which provides opportunity for both internal and external data requests (
                    <ext-link ext-link-type="uri" xlink:href="https://www.nphil.gov.lr/wp-content/uploads/2024/03/nphil-data-request-guide.pdf">https://www.nphil.gov.lr/wp-content/uploads/2024/03/nphil-data-request-guide.pdf</ext-link>).</p>
            </sec>
        </sec>
        <ack>
            <title>Acknowledgements</title>
            <p>This research was conducted through the Structured Operational Research and Training Initiative (SORT IT), a global partnership led by TDR, the Special Programme for Research and Training in Tropical Diseases hosted at the World Health Organization. The specific SORT IT program that led to this publication is a SORT IT partnership with the WHO Emergency Medical Teams (Geneva), WHO-AFRO (Brazzaville), WHO Country Offices and Ministries of health of Guinea, Liberia, Sierra Leone, and the Democratic Republic of the Congo, the Infectious Diseases Data Repository (IDDO); The International Union Against Tuberculosis and Lung Diseases, Paris, France and South East Asia offices, Delhi, India; The Tuberculosis Research and Prevention Center Non-Governmental Organization, Yerevan, Armenia; I-Tech, Lilongwe, Malawi; Medwise solutions, Nairobi, Kenya; All India Institute of Medical Sciences, Hyderabad, India; and the National Training and Research Centre in Rural Health, Maferinyah, Guinea; All health facility, district, and county surveillance officers in Liberia for generating the data; The District and County Surveillance Officers, Data Management Unit and the entire Division of Infectious Disease and Epidemiology, the National Public Health Institute of Liberia.</p>
        </ack>
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    <sub-article article-type="reviewer-report" id="report296578">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.165339.r296578</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Fichet-Calvet</surname>
                        <given-names>Elisabeth</given-names>
                    </name>
                    <xref ref-type="aff" rid="r296578a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9421-3538</uri>
                </contrib>
                <aff id="r296578a1">
                    <label>1</label>Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>9</day>
                <month>9</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Fichet-Calvet E</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport296578" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.150743.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The study describes cases of Lassa fever (LF) recorded in Liberia over a 2-year period (January 2022-December 2023). It presents socio-demographic variables such as the sex, age, occupation and place of origin of the patients. The clinical picture and the mortality rate complete this description.&#x00a0; These data are important to communicate because the epidemiology of LF is poorly documented in Liberia. I therefore encourage the authors to index these data.</p>
            <p> However, I feel that a major revision of the manuscript and the analyses is essential in order to improve readability and highlight the important points that are currently diluted in the text.&#x00a0;</p>
            <p> </p>
            <p> 
                <bold>General comments:&#x00a0;</bold>
            </p>
            <p> The manuscript is full of percentages; I counted over 200 in the introduction, results, discussion, figures and tables. This is far too many, because in the end you don't know which ones to pick out. There is often redundancy in the figures presented in the text and in the tables. There is no point in repeating the same information twice in a scientific text. It is also important to always mention the denominator when quoting a percentage in the text.</p>
            <p> Percentages are often compared using terms such as "highest", "lower", "more", without any statistics to support the comparison. These formulations should be removed from the manuscript as they are not scientific. Only statistics can confirm that one figure is smaller or larger than another.</p>
            <p> </p>
            <p> The abbreviations &#x201c;LF&#x201d; for Lassa fever and &#x201c;LASV&#x201d; for Lassa virus should be used once the term has been quoted in full for the first time. In addition, the lines should be numbered to facilitate the report of the reviewers.</p>
            <p> </p>
            <p> 
                <bold>Specific comments:</bold>
            </p>
            <p> 
                <bold>Introduction:</bold> 
                <list list-type="bullet">
                    <list-item>
                        <p>&#x201c;&#x2026; disease is primarily transmitted&#x2026;&#x201d; should be &#x201c;LASV is primarily transmitted&#x2026;&#x201d; because a disease is never transmitted. It is the pathogen that is transmitted.</p>
                    </list-item>
                    <list-item>
                        <p>Replace &#x201c;Mastomys rats&#x201d; with &#x201c;the Natal multimammate mice (Mastomys natalensis)&#x201d;. Use the term of &#x201c;mice&#x201d; instead of &#x201c;rats&#x201d; throughout the manuscript.</p>
                    </list-item>
                    <list-item>
                        <p>Transmission of LASV by direct or indirect contact is a hypothesis. It has not been scientifically proven. Therefore, use the conditional tense in this sentence.</p>
                    </list-item>
                    <list-item>
                        <p>Update the morbidity and mortality figures according to the recent publication done by Basinski,.et.al., 2021 (Ref 1)</p>
                    </list-item>
                    <list-item>
                        <p>Some case fatality rates are presented; where do they come from? Country? Years?</p>
                    </list-item>
                </list> 
                <bold>Methods:</bold> 
                <list list-type="bullet">
                    <list-item>
                        <p>Study design and study setting should be combined in one paragraph. The general setting is useless because the results do not use this information.</p>
                    </list-item>
                    <list-item>
                        <p>I think the authors did a case-control study, not a cohort study, because they did not analyse, the outcome variable (LF infection) over time. They compared different exposures or variables between cases (LASV positive) and controls (LASV negative).</p>
                    </list-item>
                    <list-item>
                        <p>The first sentence in &#x201c;specific setting&#x201d; should be shortened</p>
                    </list-item>
                    <list-item>
                        <p>Exposure to LASV: how do you know that patients touched contaminated utensils? What is a rodent-borne food? A rodent contaminated-food? It would be useful to have the questionnaire in a supplementary information in order to know how the authors evaluated/quoted the exposure to rodents.</p>
                    </list-item>
                    <list-item>
                        <p>&#x201c;A confirmed case&#x2026; laboratory confirmed case&#x2026; or virus isolation)&#x201d;. This sentence should be removed as the authors only used the RT-PCR to confirm LF in this study.</p>
                    </list-item>
                    <list-item>
                        <p>CSO and DSO: it is pointless to give abbreviation as this term is not used in the rest of the text.</p>
                    </list-item>
                    <list-item>
                        <p>Study population: this sentence is redundant with the one in Study design</p>
                    </list-item>
                    <list-item>
                        <p>Study data sources: also redundant with the information presented at the end of the Specific setting</p>
                    </list-item>
                    <list-item>
                        <p>Statistical analysis: please use the term of &#x201c;LASV prevalence&#x201d; instead of &#x201c;positivity rate&#x201d;, and throughout the manuscript. Please specify variables as dependent or independent. Why did not you perform statistics (binomial regression) on LASV prevalence and other variables? You only did statistics on CFR.</p>
                    </list-item>
                </list> 
                <bold>Results</bold>
            </p>
            <p> Section &#x201c;Characteristics of the suspected Lassa fever cases&#x201d;: 
                <list list-type="bullet">
                    <list-item>
                        <p>change this title in &#x201c;Diagnosis, Ribavirine treatment and outcome&#x201d;</p>
                    </list-item>
                </list> 
                <list list-type="bullet">
                    <list-item>
                        <p>Figure 1: state the CFR for patients tested negative for LASV.</p>
                    </list-item>
                    <list-item>
                        <p>The numbers presented in this paragraph are redundant with Table 1. I would remove this part and focus only on LASV-positive patients.</p>
                    </list-item>
                </list> Section &#x201c;Positivity rate of Lassa fever cases&#x201d;: 
                <list list-type="bullet">
                    <list-item>
                        <p>see my comment above about the positivity rate.</p>
                    </list-item>
                </list> 
                <list list-type="bullet">
                    <list-item>
                        <p>Use the term of &#x201c;LASV prevalence&#x201d; instead of &#x201c;positivity rate&#x201d; throughout the text, figure and table.</p>
                    </list-item>
                    <list-item>
                        <p>Again, there is a lot of redundancy between the text and the table.</p>
                    </list-item>
                    <list-item>
                        <p>&#x201c;highest&#x201d; see my general comment</p>
                    </list-item>
                    <list-item>
                        <p>Why not to analyse the data to build a model?</p>
                    </list-item>
                </list> Section &#x201c;Epicurve&#x201d;: 
                <list list-type="bullet">
                    <list-item>
                        <p>look at the &#x201c;more confirmed cases&#x201d;: statistics?</p>
                    </list-item>
                </list> Section &#x201c;Type of exposure&#x201d;: 
                <list list-type="bullet">
                    <list-item>
                        <p>data redundant with table 3, and not well analysed. If you wanted to analyse exposure to rodents, the question would be &#x201c;are the LASV+ patients more exposed to rodents than the LASV- patients? To do this, you would need to build a model where the RT-PCR result as an outcome (0 or 1) is a function of rodent exposure (absence/presence according to respondent?) + other variables. You did not answer this question in your article.</p>
                    </list-item>
                </list> 
                <list list-type="bullet">
                    <list-item>
                        <p>I would be curious to know such a result, as I suspect that everyone was exposed to rodents in the area&#x2026;</p>
                    </list-item>
                </list> Section &#x201c;Factors associated&#x201d;: 
                <list list-type="bullet">
                    <list-item>
                        <p>this is the most interesting part of the article. However, factors such as &#x201c;occupation&#x201d; and &#x201c;duration of onset prior to admission&#x201d; are not presented. You could say that these two variables have no effect on CFR when analysed in a bivariate model.</p>
                    </list-item>
                </list> 
                <bold>Discussion:</bold> 
                <list list-type="bullet">
                    <list-item>
                        <p>Dry season as risk season: there is no data in this article to support this assumption.</p>
                    </list-item>
                </list> Furthermore, in another article (Dwalu et al. Trend of Lassa fever cases and factors associated with mortality in Liberia, 2016 - 2021: a secondary data analysis. Pan African Medical Journal. 2024;47(22). 10.11604/pamj.2024.47.22.42156) you published data clearly showing Lassa cases throughout the year, in 6 consecutive years between 2016 and 2021. Only two years showed a peak in the dry season. So, I think it is wrong to claim a seasonal risk when your data shows the opposite in 4 out of 6 years. 
                <list list-type="bullet">
                    <list-item>
                        <p>Rodent exposure: this is not analysed in this paper (see my comment above).</p>
                    </list-item>
                    <list-item>
                        <p>High testing: what is that?</p>
                    </list-item>
                    <list-item>
                        <p>&#x201c;younger age group more affected&#x201d;: I have not seen this result. Where did you do the analysis?</p>
                    </list-item>
                    <list-item>
                        <p>&#x201c;direct or indirect contact with rodents&#x201d;: this is not analysed, leading to over-interpretation.</p>
                    </list-item>
                    <list-item>
                        <p>CFR in other countries: give the raw data, and do not repeat this idea twice at the beginning and in the middle of the discussion.</p>
                    </list-item>
                    <list-item>
                        <p>40% (xx/xx?) in Liberia: what is the reference?</p>
                    </list-item>
                    <list-item>
                        <p>Rodent-proofing measures needs to be proposed with great caution. See our recent paper on rodent control strategies in Guinea (Marien, J., M. Sage, U. Bangura, A. Lame, M. Koropogui, T. Rieger, B. Soropogui, M. Douno, N. Magassouba and E. Fichet-Calvet (2024). "Rodent control strategies and Lassa virus: some unexpected effects in Guinea, West Africa." Emerg Microbes Infect 13(1): 2341141). &#x00a0;</p>
                    </list-item>
                    <list-item>
                        <p>As you published data from 2016-2021 surveillance in Dwalu et al. 2024, why don&#x2019;t you discuss the results presented here with those published previously?</p>
                    </list-item>
                    <list-item>
                        <p>More generally, what is the novelty of this article when compared to Dwalu et al. 2024?</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>No</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Lassa fever, Lassa virus evolution, phylogeography, rodent ecology, West Africa, eco-epidemiology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <back>
            <ref-list>
                <title>References</title>
                <ref id="rep-ref-296578-1">
                    <label>1</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Bridging the gap: Using reservoir ecology and human serosurveys to estimate Lassa virus spillover in West Africa.</article-title>
                        <source>
                            <italic>PLoS Comput Biol</italic>
                        </source>.<year>2021</year>;<volume>17</volume>(<issue>3</issue>) :
                        <elocation-id>10.1371/journal.pcbi.1008811</elocation-id>
                        <fpage>e1008811</fpage>
                        <pub-id pub-id-type="pmid">33657095</pub-id>
                        <pub-id pub-id-type="doi">10.1371/journal.pcbi.1008811</pub-id>
                    </mixed-citation>
                </ref>
            </ref-list>
        </back>
        <sub-article article-type="response" id="comment13600-296578">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Dwalu</surname>
                            <given-names>Emmanuel</given-names>
                        </name>
                        <aff>Infectious Disease &amp; Epidemiol, National Public Health Institute of Liberia, Monrovia, Montserrado, Liberia</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interest.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>21</day>
                    <month>3</month>
                    <year>2025</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <bold>The Editor</bold>
                </p>
                <p>
                    <bold> F1000 Peer Review Journal</bold>
                </p>
                <p> </p>
                <p> 
                    <bold>Ref: Response to Peer Reviewers&#x2019; Reports - F1000 Research Peer Review: Epidemiological characteristics and hospital outcomes of hospitalized Lassa fever cases during the 2022 &#x2013; 2023 outbreak in Liberia </bold>
                </p>
                <p> </p>
                <p> Dear F1000 Research Editorial Team,</p>
                <p> Thank you for facilitating the peer review process for our manuscript. We have carefully addressed all the reviewers&#x2019; comments, and we believe that the revised manuscript now aligns with the journal&#x2019;s requirements.</p>
                <p> Below, we provide a line-by-line response to the reviewers&#x2019; comments, with the original comments highlighted in bold.</p>
                <p> Sincerely,</p>
                <p> Emmanuel Dwalu</p>
                <p> </p>
                <p> 
                    <bold>Reviewer # 2:&#x00a0; </bold>
                </p>
                <p> 
                    <bold>General comments: </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>The manuscript is full of percentages; I counted over 200 in the introduction, results, discussion, figures and tables. This is far too many, because in the end you don't know which ones to pick out. There is often redundancy in the figures presented in the text and in the tables. There is no point in repeating the same information twice in a scientific text. It is also important to always mention the denominator when quoting a percentage in the text.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We appreciate the reviewer&#x2019;s observation. We have revised removing some percentages from the introduction section. However, we still think it is necessary to maintain the percentages in the manuscript's results section.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Percentages are often compared using terms such as "highest", "lower", "more", without any statistics to support the comparison. These formulations should be removed from the manuscript as they are not scientific. Only statistics can confirm that one figure is smaller or larger than another.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>Thanks to the reviewer for this comment. We have revised the manuscript accordingly.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>The abbreviations &#x201c;LF&#x201d; for Lassa fever and &#x201c;LASV&#x201d; for Lassa virus should be used once the term has been quoted in full for the first time. In addition, the lines should be numbered to facilitate the report of the reviewers.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We have revised the manuscript accordingly.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                    </list> 
                    <bold>Specific comments:</bold>
                </p>
                <p> 
                    <bold>Introduction:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>&#x201c;&#x2026; disease is primarily transmitted&#x2026;&#x201d; should be &#x201c;LASV is primarily transmitted&#x2026;&#x201d; because a disease is never transmitted. It is the pathogen that is transmitted.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We have revised the manuscript accordingly.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Replace &#x201c;Mastomys rats&#x201d; with &#x201c;the Natal multimammate mice (Mastomys natalensis)&#x201d;. Use the term of &#x201c;mice&#x201d; instead of &#x201c;rats&#x201d; throughout the manuscript.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We agree and have revised the manuscript.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Transmission of LASV by direct or indirect contact is a hypothesis. It has not been scientifically proven. Therefore, use the conditional tense in this sentence.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We have revised the manuscript accordingly.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Update the morbidity and mortality figures according to the recent publication done by Basinski,.et.al., 2021 (Ref 1)</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We appreciate the reviewer for this observation and recommendation. However, the figure presented in the recommended study (a systematic review), has different sources of data but our study (retrospective cohort study) has all the data coming from one surveillance system is Liberia. Therefore, the authors have seen it useful to maintain the figure used in our study.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Some case fatality rates are presented; where do they come from? Country? Years?</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>The authors have cited the reference in the manuscript to reflect &#x201d; The case fatality rate (CFR) among hospitalized patients is estimated to be between 15% and 20% [17] but could be more during epidemics [7,18,19][7].</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                    </list> 
                    <bold>Methods:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>Study design and study setting should be combined in one paragraph. The general setting is useless because the results do not use this information.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>Thanks to the reviewer for this comment. In the general setting, we provide an overview of the Liberian health system's structure, with an emphasis on the reference system, which is later linked to LF case definition and case detection in the specific setting. Therefore, we respectfully disagree with the reviewer&#x2019;s suggestion to combine the design section and remove the general setting.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>I think the authors did a case-control study, not a cohort study, because they did not analyze, the outcome variable (LF infection) over time. They compared different exposures or variables between cases (LASV positive) and controls (LASV negative).</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>Thank you for your comment. We would like to clarify that this is a retrospective cohort study (we have now added the word retrospective) in which all suspected Lf cases were followed until diagnosis, and those confirmed with the infection were followed until discharge. The cases (LASV-positive) and controls (LASV-negative) were not selected based on their exposure status.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Exposure to LASV: how do you know that patients touched contaminated utensils? What is a rodent-borne food? A rodent contaminated-food? It would be useful to have the questionnaire in a supplementary information in order to know how the authors evaluated/quoted the exposure to rodents.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We agree with the reviewer. There was no questionnaire for data collection, as it was clearly stated that the study obtained and utilized case-based records of routine national surveillance data of all suspected Lassa fever cases reported between January 2022 and December 2023 that were reported to the National Public Health Institute of Liberia and cross-checked. However, in our study methods (specific setting), we have revised the definition of exposure to Lassa virus as &#x201c;any contact with rodents, either directly (handling rodents or their food sources) or indirectly (through contact with contaminated utensils, feces, urine, or consumption of food contaminated with rodent feces or urine).</p>
                                    </list-item>
                                    <list-item>
                                        <p>However, the form had incomplete data which necessitated grouping of the responses into the categories that are reported in the manuscript.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>&#x201c;A confirmed case&#x2026; laboratory confirmed case&#x2026; or virus isolation)&#x201d;. This sentence should be removed as the authors only used the RT-PCR to confirm LF in this study. </bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We have revised the manuscript as: A confirmed case&#x00a0; was defined as a suspected or probable case with a confirmed /positive laboratory test (positive IgM antibody, positive RT-PCR) or epidemiologically linked to a laboratory confirmed case [22].</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>CSO and DSO: it is pointless to give abbreviation as this term is not used in the rest of the text.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We agree and have revised the manuscript. 
                                            <bold>&#x00a0; &#x00a0; &#x00a0; &#x00a0; &#x00a0; &#x00a0;&#x00a0;</bold>
                                        </p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Study population: this sentence is redundant with the one in Study design</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We appreciate the reviewer and have revised the manuscript.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Study data sources: also redundant with the information presented at the end of the Specific setting</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We appreciate the reviewer&#x2019;s comment. However, in the entire specific setting, the authors explained LF case detection, recording/documentation and reporting as well as case definition (suspected, probable, and confirmed). &#x00a0;At the end, the authors explained that data from the IDSR ledger and case alert and laboratory paper-based forms were regularly entered into an MS Excel dataset containing the line-list of LF surveillance data in each district, then submitted to the county level and onward to the National Public Health Institute of Liberia. &#x00a0;Information on sources was explained in the succeeding paragraph (Study data sources, variables, and validation).</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Statistical analysis: please use the term of &#x201c;LASV prevalence&#x201d; instead of &#x201c;positivity rate&#x201d;, and throughout the manuscript. Please specify variables as dependent or independent. </bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We have revised the manuscript accordingly.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Why did not you perform statistics (binomial regression) on LASV prevalence and other variables? You only did statistics on CFR.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We thank the reviewer for the useful observation. However, the focus of our study was the characteristics and hospital outcomes of Lf patients. We had to indicate the total suspected, tested and positivity to inform our readers before delving into the characteristics of the confirmed and their outcomes. Therefore, the authors think that the analysis performed supports the study objectives' attainment.&#x00a0; &#x00a0;</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                    </list> 
                    <bold>Results </bold>
                </p>
                <p> 
                    <bold>Section &#x201c;Characteristics of the suspected Lassa fever cases&#x201d;:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>change this title in &#x201c;Diagnosis, Ribavirin treatment and outcome&#x201d;</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We have revised the manuscript:</p>
                                    </list-item>
                                    <list-item>
                                        <p>The CFR for patients tested LASV negative is indicated in figure 2 (15%, 42/278)) against the 30% (41/138) CFR for confirmed cases.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>The numbers presented in this paragraph are redundant with Table 1. I would remove this part and focus only on LASV-positive patients.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We appreciate the reviewer but the authors think this is relevant to be maintained.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                    </list> 
                    <bold>Section &#x201c;Positivity rate of Lassa fever cases&#x201d;: </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>see my comment above about the positivity rate.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>Please see response below response in addition to the succeeding comments.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Use the term of &#x201c;LASV prevalence&#x201d; instead of &#x201c;positivity rate&#x201d; throughout the text, figure and table.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We appreciate the reviewer&#x2019;s detailed review and comments/recommendations. However, our analysis focused on LASV positivity rather than prevalence. This is because prevalence looks at a specific number of people who have (or had) the disease during a specific time period, which would be the number of truly positive individuals out of the entire population&#x2014;not just who is tested.</p>
                                    </list-item>
                                    <list-item>
                                        <p>The positivity rate&#x2014;also referred to as &#x201c;percent positive rate&#x201d; or &#x201c;percent positive&#x201d; is the percentage of all Lf tests performed that are actually positive. Positivity rate is usually expressed as a percentage (Rogers &amp; John Hopkins School of Public Health, 2020).</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Again, there is a lot of redundancy between the text and the table.</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We have revised highlighting the key findings instead of reproducing the table in text.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>&#x201c;highest&#x201d; see my general comment</bold> 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>We agreed and revised the manuscript accordingly.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Why not to analyze the data to build a model?</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>The reviewer&#x2019;s comment is appreciated. However, the authors did not set to build a model in this study. This could be considered in subsequent studies.</p>
                        </list-item>
                    </list> 
                    <bold>Section &#x201c;Epicurve&#x201d;:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>look at the &#x201c;more confirmed cases&#x201d;: statistics?</bold>
                            </p>
                        </list-item>
                    </list> 
                    <list list-type="bullet">
                        <list-item>
                            <p>We have revised the manuscript accordingly.</p>
                        </list-item>
                    </list> 
                    <bold>Section &#x201c;Type of exposure&#x201d;:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>data redundant with table 3, and not well analyzed. If you wanted to analyze exposure to rodents, the question would be &#x201c;are the LASV+ patients more exposed to rodents than the LASV- patients? To do this, you would need to build a model where the RT-PCR result as an outcome (0 or 1) is a function of rodent exposure (absence/presence according to respondent?) + other variables. You did not answer this question in your article.</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>I would be curious to know such a result, as I suspect that everyone was exposed to rodents in the area&#x2026;</bold>
                            </p>
                        </list-item>
                    </list> 
                    <list list-type="bullet">
                        <list-item>
                            <p>We appreciate the reviewer&#x2019;s comments. . However, our analysis was focused on describing the characteristics of the confirmed Lf cases and their outcomes. These characteristics included socio-demographics, clinical, and exposures (including rodent exposure, etc). We did not set out to deal with factors associated with LASV positivity among the patients.&#x00a0;</p>
                        </list-item>
                    </list> 
                    <bold>Section &#x201c;Factors associated&#x201d;:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>this is the most interesting part of the article. However, factors such as &#x201c;occupation&#x201d; and &#x201c;duration of onset prior to admission&#x201d; are not presented. You could say that these two variables do not affect CFR when analyzed in a bivariate model. </bold>
                            </p>
                        </list-item>
                    </list> 
                    <list list-type="bullet">
                        <list-item>
                            <p>Occupation and duration of onset prior to admission, along with others were presented in the bivariate analysis but were not significant. That&#x2019;s why we did not present them in the multivariate analysis, but rather focused on those that were significant.</p>
                        </list-item>
                    </list> 
                    <bold>Discussion:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>Dry season as risk season: there is no data in this article to support this assumption.</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Furthermore, in another article (Dwalu et al. Trend of Lassa fever cases and factors associated with mortality in Liberia, 2016 - 2021: a secondary data analysis. Pan African Medical Journal. 2024;47(22). 10.11604/pamj.2024.47.22.42156) you published data clearly showing Lassa cases throughout the year, in 6 consecutive years between 2016 and 2021. Only two years showed a peak in the dry season. So, I think it is wrong to claim a seasonal risk when your data shows the opposite in 4 out of 6 years.</bold>
                            </p>
                        </list-item>
                    </list> 
                    <list list-type="bullet">
                        <list-item>
                            <p>The reviewer&#x2019;s comment is appreciated. The two years indicated in the article mentioned above (2019 &amp; 2020) recorded the majority of the cases (54%) but the overall majority was reported during the dry season (79%) covering October to March. Over half of the cases (59%, 81/138) clustered between epi-weeks 1-12 and 40-52, aligning with the dry season (October &#x2013; March) (Figure 4).&#x201d; Based on this, the authors could safely say that dry season accounted for the majority of the cases, likewise the current study.</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Rodent exposure: this is not analyzed in this paper (see my comment above).</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>Rodent exposure was analyzed in table 2 along with clinical characteristics and outcome and 68% of the confirmed cases were exposed to rodents.</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>High testing: what is that? </bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>We appreciate the reviewer and have according revised this to high detection and positivity, instead of high testing and positivity rates.</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>&#x201c;younger age group more affected&#x201d;: I have not seen this result. Where did you do the analysis?</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>We thank the reviewer for the observation. This analysis can be seen in tables 1 and 3 where 95 (69%) were less than 30 years.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>However, the authors have agreed to omit this finding from the discussion.</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>&#x201c;direct or indirect contact with rodents&#x201d;: this is not analyzed, leading to over-interpretation.</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>Our data analyzed showed exposure to rodents but did not establish direct or indirect contact. This was provided in the discussion to mean that exposure to rodents could be either by direct or indirect contact to rodents. The majority of the confirmed cases reported exposure to rodents suggesting exposure (68%, 95/138).</p>
                        </list-item>
                        <list-item>
                            <p>We have revised the manuscript to remain with exposure to rodents.</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>CFR in other countries: give the raw data, and do not repeat this idea twice at the beginning and in the middle of the discussion.</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>40% (xx/xx?) in Liberia: what is the reference?</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>We agree and have revised the manuscript accordingly (40 
                                <bold>(41/103)</bold>
                                <bold>[6]</bold>
                                <bold> </bold>in Liberia.</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Rodent-proofing measures need to be proposed with great caution. See our recent paper on rodent control strategies in Guinea (Marien, J., M. Sage, U. Bangura, A. Lame, M. Koropogui, T. Rieger, B. Soropogui, M. Douno, N. Magassouba and E. Fichet-Calvet (2024). "Rodent control strategies and Lassa virus: some unexpected effects in Guinea, West Africa." Emerg Microbes Infect 13(1): 2341141).</bold>&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>We agree with the reviewer and have revised it accordingly
                                <bold>. </bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>As you published data from 2016-2021 surveillance in Dwalu et al. 2024, why don&#x2019;t you discuss the results presented here with those published previously?</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>More generally, what is the novelty of this article when compared to Dwalu et al. 2024?</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>The reviewer&#x2019;s comment is highly appreciated. However, the previous study was focused on trend, though it also highlighted factors associated with mortality. In the current study, clinical and exposure characteristics are highlighted in addition to mortality, which were missing in the previous study.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Is the work clearly and accurately presented and does it cite the current literature?</bold>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Partly&#x00a0; &#x00a0; &#x00a0; &#x00a0; &#x00a0; &#x00a0; &#x00a0; &#x00a0;&#x00a0;</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>Is the study design appropriate and is the work technically sound?</bold>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Partly</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>Are sufficient details of methods and analysis provided to allow replication by others?</bold>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Partly</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>If applicable, is the statistical analysis and its interpretation appropriate?</bold>
                            </p>
                        </list-item>
                    </list> 
                    <bold>No</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>Are all the source data underlying the results available to ensure full reproducibility?</bold>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Partly</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>Are the conclusions drawn adequately supported by the results?</bold>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Partly</bold>
                </p>
                <p> </p>
                <p> 
                    <bold>References</bold>
                </p>
                <p> 
                    <bold>1. Basinski AJ, Fichet-Calvet E, Sjodin AR, Varrelman TJ, et al.: Bridging the gap: Using reservoir ecology and human serosurveys to estimate Lassa virus spillover in West Africa.PLoS Comput Biol. 2021; 17 (3): e1008811 PubMed Abstract | Publisher Full Text</bold>
                </p>
                <p> </p>
                <p> 
                    <bold>Competing Interests</bold>
                </p>
                <p> 
                    <bold>No competing interests were disclosed.</bold>
                </p>
                <p> </p>
                <p> 
                    <bold>Reviewer Expertise</bold>
                </p>
                <p> 
                    <bold>Lassa fever, Lassa virus evolution, phylogeography, rodent ecology, West Africa, eco-epidemiology</bold>
                </p>
                <p> 
                    <bold>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however, I have significant reservations, as outlined above.</bold>
                </p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report296577">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.165339.r296577</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Hamer</surname>
                        <given-names>Davidson</given-names>
                    </name>
                    <xref ref-type="aff" rid="r296577a1">1</xref>
                    <xref ref-type="aff" rid="r296577a2">2</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-6578-1851</uri>
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Balogun</surname>
                        <given-names>Oluwafemi</given-names>
                    </name>
                    <xref ref-type="aff" rid="r296577a3">3</xref>
                    <role>Co-referee</role>
                </contrib>
                <aff id="r296577a1">
                    <label>1</label>Department of Global Health, Boston University School of Public Health, Boston, MA, USA</aff>
                <aff id="r296577a2">
                    <label>2</label>Boston University Center on Emerging Infectious Diseases, Boston, Massachusetts, USA</aff>
                <aff id="r296577a3">
                    <label>3</label>Department of Medicine, Massachusetts General Hospital (Ringgold ID: 2348), Boston, Massachusetts, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>19</day>
                <month>7</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Hamer D and Balogun O</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport296577" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.150743.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>
                <bold>F1000 Research Peer Review</bold>&#x00a0;:&#x00a0;
                <underline>Epidemiological characteristics and hospital outcomes of hospitalized Lassa fever cases during the 2022 &#x2013; 2023 outbreak in Liberia</underline>&#x00a0;</p>
            <p> 
                <underline>Peer Review</underline>&#x00a0;</p>
            <p> 
                <bold>[General Comment]</bold>&#x00a0;</p>
            <p> Overall, this manuscript provides an insightful epidemiological analysis of the Lassa fever outbreak and its impact on hospitalized patients in Liberia from 2022 to 2023. The authors present compelling findings that address an evolving public health issue in the context of an outbreak. They have adequately described the study setting &amp; population, exposures (sociodemographic and epidemiological characteristics), and outcome measurements.&#x00a0;&#x00a0;</p>
            <p> </p>
            <p> Fundamentally, this manuscript can contribute to the existing literature on Lassa fever by providing insights and understanding into the epidemiological dynamics and clinical outcomes associated with Lassa fever. Additionally, it expands on the substantial burden placed on hospitalized patients during the outbreak, thereby highlighting critical aspects for public health preparedness and response strategies.&#x00a0;</p>
            <p> </p>
            <p> The title refers to the epidemiological characteristics and hospital outcomes of patients hospitalized with Lassa fever, but the manuscript has a moderate amount of material on the patients who were initially suspected to have Lassa fever but were not confirmed. We recommend focusing the analysis on the confirmed cases and only providing a brief description of the suspected cases at the beginning of the Results.&#x00a0;&#x00a0;</p>
            <p> </p>
            <p> 
                <bold>[Specific Comments]</bold>
            </p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 1:</underline>
                </bold> Rather than refer to cases in the title and the abstract, patients is a better term to use (there are sections where the term case is reasonable when summarizing statistics but not when describing the acute infection and outcomes of the pooled cohort of patients.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 2:</underline>
                </bold> Second sentence of the Background of the abstract, outcomes should be plural as in &#x201c;...and hospital outcomes of Lassa fever patients hospitalized...&#x201d;.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 3:</underline>
                </bold> Abstract, Results. Recommend introducing the abbreviation IQR in the second sentence &#x201c;...was 22 (interquartile range [IQR] 10-33)...&#x201d;</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 4:</underline>
                </bold> In the results section of the abstract, the authors mentioned that 
                <bold>
                    <italic>&#x2018;290 (69%) of confirmed cases were &lt;30 years.&#x2019;</italic>
                </bold> However, in the preceding sentence, the authors stated that there were 138 confirmed cases which equates to 33% positivity rate.&#x00a0; Once you start referring to confirmed cases, the denominator should be all confirmed cases (N = 138) yet the description &#x201c;290 (69%) of confirmed cases were &lt;30 years old&#x201d; is incorrect. The next two percentages are based on the correct, smaller denominator.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 5:</underline>
                </bold> Abstract, Results. Would consider removing mention of the mortality rate among the suspected but not confirmed Lassa fever cases. There is no information provided on the possible causes of febrile illness in these patients so readers will have no idea what they died from (probably a mix of malaria, bacteremia, and potentially other infectious etiologies).</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 6:</underline>
                </bold> Abstract, Results. For the last sentence, please add the denominator for each group (age 40-49 years, age &gt; or = 50 years).</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 7:</underline>
                </bold> Abstract, Conclusions. As suggested above, we would consider removing the phrase &#x201c;substantial mortality, even among those who tested negative for the virus&#x201d; since the causes of acute febrile illness in this group are not described. In contrast, it might be useful to mention the empirical use of ribavirin even for patients who were ruled out for Lassa fever, as this means many patients were exposed unnecessarily to a moderately toxic antiviral.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 8:</underline>
                </bold> Keywords. Suggest removing Liberia and Lassa fever since these are in the article title and all terms in the title will be picked up by search engines. And SORT IT may not be a searchable term. Consider adding ribavirin as a term.</p>
            <p> </p>
            <p> 
                <bold>[Introduction Section]</bold>
            </p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 9:</underline>
                </bold> Mastomys natalensis in the third sentence of the &#x2018;Introduction&#x2019; should be written in the standard scientific format as &#x2018;
                <italic>Mastomys natalensis&#x2019;.</italic> This same suggestion applies to the Discussion (third paragraph).</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 10:</underline>
                </bold> Introduction. Although the prevalence of frequently presenting symptoms in suspected Lassa fever cases is interesting, the more relevant symptoms are those demonstrated in patients who have been confirmed.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 11:</underline>
                </bold> Introduction. Suggest adding risk factors for mortality from Lassa fever as one of the objectives of this analysis.</p>
            <p> </p>
            <p> 
                <bold>[Methods Section]</bold>
            </p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 12:</underline>
                </bold> It will be beneficial to the readers of the journal to know the type of cohort study conducted. Kindly specify it is retrospective or prospective (
                <bold>Study Design</bold>).</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 12:</underline>
                </bold> Methods, Specific setting. Third line. Suggest rephrasing to &#x201c;...for Lassa fever to identify suspect cases..&#x201d;.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 13:</underline>
                </bold> In the context of the first and second sentence of the 
                <bold>Specific Setting</bold> of the 
                <bold>Methods section</bold>, please include a phrase/sentence that indicates the reporting tool, means of communication, and timeliness of reporting (window period) employed by the community healthcare workers when reporting suspected cases to the nearest health facility for verification.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 14:</underline>
                </bold> Although this sentence (In the Study Settings section), 
                <bold>
                    <italic>&#x2018;The IDSR case alert and laboratory submission forms were then completed and finally samples were collected&#x2019;</italic>
                </bold>, is understood by the reviewer, for clarification and non-assumption by readers of the journal, the authors should indicate the specific type of sample that was collected from the patients for Lassa fever testing.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 15:</underline>
                </bold> Generic drug names should be presented in lower case&#x2014;ribavirin should not be capitalized.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 16:</underline>
                </bold> Were there specific selection criteria for the use of ribavirin?</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 17:</underline>
                </bold> Concerning this statement, 
                <bold>&#x2018;Daily assessments were performed using charts to monitor the patients&#x2019; progress&#x2019;</bold>, please specify (
                <bold>concisely</bold>) the assessments done.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 18:</underline>
                </bold> Please rephrase the statement 
                <bold>
                    <italic>&#x2018;Individuals with negative results were discharged immediately after the Ribavirin treatment was discontinued&#x2019;</italic>
                </bold> to something like 
                <bold>
                    <italic>&#x2018;Individuals with negative results after a repeat RT-PCR testing were discharged immediately after the ribavirin treatment was discontinued.&#x2019;</italic>
                </bold> If this is not what the authors are trying to convey, kindly clarify.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 19:</underline>
                </bold> Kindly 
                <bold>expound</bold> the phrase 
                <bold>
                    <italic>&#x2018;and selected treatment centers&#x2019;</italic>
                </bold> in the sentence 
                <bold>
                    <italic>&#x2018;Due to incomplete information in some records, we reconciled the data using the county surveillance database and selected treatment centers.&#x2019;</italic>
                </bold> Succinctly expand the phrase to provide more context to readers.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 20:</underline>
                </bold> Statistical analysis. The sentence 
                <bold>
                    <italic>&#x2018;We used log binomial regression to assess the association between socio-demographics, clinical characteristics, and case fatality rates&#x2019;</italic>
                </bold> should be revised to 
                <bold>
                    <italic>&#x2018;We used log binomial regression to assess the association between socio-demographics, clinical characteristics, and mortality.</italic>
                </bold>&#x2019; CFR is a population-level indicator, and it appears the authors inadvertently substituted this in place of mortality.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 21:</underline>
                </bold> Statistical analysis. The term risk ratio should be in lower case.</p>
            <p> </p>
            <p> 
                <bold>[Results Section]</bold>
            </p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 22:</underline>
                </bold> Results. Second sentence. Missing a period at the end of the sentence.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 23:</underline>
                </bold> Results. The authors revealed that some individuals were excluded in the statement 
                <bold>
                    <italic>&#x2018;Among 439 individuals, about one quarter (26%, 116/439) were excluded due to missing data on date of symptom onset or admission&#x2019;</italic>
                </bold>. Specify what the individuals were excluded from, e.g., from the regression analyses or Table 2. Kindly clarify.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 24:</underline>
                </bold> Results. The utility of the data in Table 2 is relatively limited. The median time from symptom onset to hospital admission was similar across age groups (by a day or two), gender (half a day), and county (except Nimba). This table could be removed and a sentence or two added to the Results to describe the major findings.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 25:</underline>
                </bold> In 
                <bold>Table 4,</bold> was there any reason why Bong County was selected as the reference group? Or was the county selected randomly?</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 26:</underline>
                </bold> Results. It would be interesting and potentially informative to compare patients who had confirmed Lassa fever (PCR+) who received ribavirin vs. those who did not receive this antiviral treatment. Are there any significant differences in their clinical or demographic characteristics?</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 27:</underline>
                </bold> 
                <bold>Table 4</bold>, Ribavirin treatment (yes or no) was not included in the bivariable and multivariable models. Historical data and corresponding studies have shown a decrease in mortality among those administered (especially within 6 days from symptom onset). For comprehensiveness, it would be important to explore and demonstrate the associations between the administration of the treatment and mortality. Additionally, the adjusted (multivariable) models with its findings would have more validity if this was also accounted for.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 28:</underline>
                </bold> 
                <bold>Table 4</bold>. The authors used a reference cutoff of 7 days to assess the association between duration from symptom onset to hospital presentation. However, we recommend the authors to explore the 4 days as the reference cutoff. Earlier in the results section, the authors reported the median symptom-hospital duration to be 4 days with an IQR of 2 to 7. For validity reasons, kindly conduct an exploratory analysis/sensitivity analysis to explore this new cutoff.</p>
            <p> </p>
            <p> 
                <bold>[Discussion Section]</bold>
            </p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 29:</underline>
                </bold> The abbreviation CFR was introduced much earlier in the manuscript. It should be used on the first and third lines of the beginning of the Discussion. Also, we recommend using the term &#x2018;patients&#x2019; rather than cases in the first sentence of the Discussion.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 30:</underline>
                </bold> As noted earlier, the group with suspected Lassa fever who were not confirmed is likely a mixture of different etiological agents. Suggest removing the last sentence of the first paragraph of the Discussion for this reason.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 31:</underline>
                </bold> The last statement of the second paragraph 
                <bold>
                    <italic>&#x2018;Additionally, effective community infection prevention control programmes in endemic areas might be of help&#x2019;</italic>
                </bold> is quite vague. The authors (in their recommendation) should kindly be specific in who implements and ensures the effectiveness of the community IPC programmes.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 32:</underline>
                </bold> In the third paragraph, in the third and second to last lines, might be better to state &#x201c;A clean environment in both the house and outside environment...&#x201d;</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 33:</underline>
                </bold> Additional information is required for this statement 
                <bold>
                    <italic>&#x2018;Similar to other studies, the CFR was higher among elderly people. However, the reasons for this are unclear, warranting further research in understanding the occurrence.&#x2019;</italic>
                </bold> Yes, additional studies are warranted to better understand the pathophysiological mechanism contributing to the high CFR among elderly population. However, the authors should state possible reasons for high CFR being demonstrated among this population, e.g. comorbidities, waning immunity, etc.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 34:</underline>
                </bold> The statement 
                <bold>
                    <italic>&#x2018;The high CFR in Nimba could be due to the fact that the county is endemic for Lassa fever, with the majority of cases detected at the health facility rather than through early community detection, which impacts on early treatment&#x2019; </italic>
                </bold>is a bit conflicting with your earlier report. In the results section, the authors observed that Nimba had the shortest median time (&lt;1 day) from symptom onset to hospital admission. Kindly reconcile the two statements and re-phrase accordingly.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 35:</underline>
                </bold> We suggest the authors re-phrase this 
                <bold>
                    <italic>statement &#x2018;leading to unnecessary admissions and ribavirin use as well as delayed appropriate treatment&#x2019;</italic>
                </bold> to 
                <bold>
                    <italic>&#x2018;leading to unnecessary admissions and ribavirin use as well as delays in receiving appropriate treatment.&#x2019;</italic>
                </bold>
            </p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 36:</underline>
                </bold> The findings of the study highlighted a notable concentration of cases in Bong, Grand Bassa, and Nimba Counties. However, the authors did not provide or suggest possible explanations or hypotheses for these observations. Also, Figure 2 illustrates that these three Counties are adjacent to each other. Therefore, it would be beneficial for readers if the authors could delve into the potential influence of infected individuals migrating across County borders. This exploration could shed light on how population movements might contribute to the spread of Lassa fever in this region, offering valuable insights into disease dynamics and transmission patterns.</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 37:</underline>
                </bold> In the paragraph that describes the need for improved strategies, it might be useful to describe the need for a rapid point-of-care test for Lassa fever since this would be so helpful to triage patients for infection control purposes and treatment (especially if more effective antivirals become available).</p>
            <p> </p>
            <p> 
                <bold>References:</bold>
            </p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 38:</underline>
                </bold> There is no need to include Indian Council of Medical Research in the first citation.&#x00a0;</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 39:</underline>
                </bold> Lassa should be capitalized in the third citation.&#x00a0;</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 40:</underline>
                </bold> Several of the article titles are presented in title case rather than having just the first letter capitalized (e.g., citation 7, 11, 12, and 21).&#x00a0;</p>
            <p> </p>
            <p> 
                <bold>
                    <underline>Comment 41:</underline>
                </bold> There is a duplicate of Balogun OO et al. This is presented as reference 7 and 14.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Partly</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>No</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Emerging infectious diseases, antimicrobial resistance, malaria, Chagas disease</p>
            <p>We confirm that we have read this submission and believe that we have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however we have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment13599-296577">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Dwalu</surname>
                            <given-names>Emmanuel</given-names>
                        </name>
                        <aff>Infectious Disease &amp; Epidemiol, National Public Health Institute of Liberia, Monrovia, Montserrado, Liberia</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interest.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>21</day>
                    <month>3</month>
                    <year>2025</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <bold>The Editor</bold>
                </p>
                <p>
                    <bold> F1000 Peer Review Journal</bold>
                </p>
                <p> </p>
                <p> 
                    <bold>Ref: Response to Peer Reviewers&#x2019; Reports - F1000 Research Peer Review: Epidemiological characteristics and hospital outcomes of hospitalized Lassa fever cases during the 2022 &#x2013; 2023 outbreak in Liberia </bold>
                </p>
                <p> </p>
                <p> Dear F1000 Research Editorial Team,</p>
                <p> Thank you for facilitating the peer review process for our manuscript. We have carefully addressed all the reviewers&#x2019; comments, and we believe that the revised manuscript now aligns with the journal&#x2019;s requirements.</p>
                <p> Below, we provide a line-by-line response to the reviewers&#x2019; comments, with the original comments highlighted in bold.</p>
                <p> </p>
                <p> Sincerely,</p>
                <p> Emmanuel Dwalu</p>
                <p> </p>
                <p> 
                    <bold>Reviewer # 1: &#x00a0;</bold>
                </p>
                <p> 
                    <bold>General Comment: </bold>
                </p>
                <p> 
                    <bold>Overall, this manuscript provides an insightful epidemiological analysis of the Lassa fever outbreak and its impact on hospitalized patients in Liberia from 2022 to 2023. The authors present compelling findings that address an evolving public health issue in the context of an outbreak. They have adequately described the study setting &amp; population, exposures (socio-demographic and epidemiological characteristics), and outcome measurements.</bold>
                </p>
                <p> 
                    <bold>Fundamentally, this manuscript can contribute to the existing literature on Lassa fever by providing insights and understanding into the epidemiological dynamics and clinical outcomes associated with Lassa fever. Additionally, it expands on the substantial burden placed on hospitalized patients during the outbreak, thereby highlighting critical aspects for public health preparedness and response strategies.&#x00a0;&#x00a0; </bold>
                </p>
                <p> 
                    <bold>The title refers to the epidemiological characteristics and hospital outcomes of patients hospitalized with Lassa fever, but the manuscript has a moderate amount of material on the patients who were initially suspected to have Lassa fever but were not confirmed. We recommend focusing the analysis on the confirmed cases and only providing a brief description of the suspected cases at the beginning of the results.&#x00a0; </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We appreciate the reviewer&#x2019;s observation. However, in practice, suspected cases are initiated LF treatment while awaiting the test result, as timely intervention is crucial. By including both suspected and confirmed cases, we provide a comprehensive understanding of the complexities and real-world challenges faced in diagnosing and managing this disease. Therefore, we believe it is relevant to present both suspected and confirmed cases but went detail with the confirmed results.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>[Specific Comments] </bold>
                </p>
                <p> 
                    <bold>Comment 1: Rather than refer to cases in the title and the abstract, patients is a better term to use (there are sections where the term case is reasonable when summarizing statistics but not when describing the acute infection and outcomes of the pooled cohort of patients. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have addressed this comment in the manuscript accordingly.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 2: Second sentence of the Background of the abstract, outcomes should be plural as in &#x201c;...and hospital outcomes of Lassa fever patients hospitalized...&#x201d;. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>We have updated the sentence.</p>
                        </list-item>
                    </list> 
                    <bold>Comment 3: Abstract, Results. Recommend introducing the abbreviation IQR in the second sentence &#x201c;...was 22 (interquartile range [IQR] 10-33)&#x2026;&#x201d; </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have added the abbreviation of interquartile range.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 4: In the results section of the abstract, the authors mentioned that &#x2018;290 (69%) of confirmed cases were &lt;30 years.&#x2019; However, in the preceding sentence, the authors stated that there were 138 confirmed cases which equates to 33% positivity rate.&#x00a0; Once you start referring to confirmed cases, the denominator should be all confirmed cases (N = 138) yet the description &#x201c;290 (69%) of confirmed cases were &lt;30 years old&#x201d; is incorrect. The next two percentages are based on the correct, smaller denominator. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have revised the manuscript with the appropriate frequency and proportion.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 5: Abstract, Results. Would consider removing mention of the mortality rate among the suspected but not confirmed Lassa fever cases. There is no information provided on the possible causes of febrile illness in these patients so readers will have no idea what they died from (probably a mix of malaria, bacteremia, and potentially other infectious etiologies).&#x00a0; </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We thank the reviewer for the comment. We have revised the subheading to "deaths" instead of "mortality." We retained the presentation of deaths among unconfirmed cases due to the relatively high proportion (42/278, 15%), which warrants further investigation to improve in-hospital outcomes. 
                                    <bold>We have added this recommendation to our paper to inform further research on Lassa fever in Liberia.</bold>
                                </italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 6: Abstract, Results. For the last sentence, please add the denominator for each group (age 40-49 years, age &gt; or = 50 years). </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have addressed this comment accordingly.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 7: Abstract, Conclusions. As suggested above, we would consider removing the phrase &#x201c;substantial mortality, even among those who tested negative for the virus&#x201d; since the causes of acute febrile illness in this group are not described. In contrast, it might be useful to mention the empirical use of ribavirin even for patients who were ruled out for Lassa fever, as this means many patients were exposed unnecessarily to a moderately toxic antiviral. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>As noted in point 5 above, highlighting the relatively high death rates among individuals who tested negative for LF underscores the need to improve the management of suspected cases. Regarding ribavirin treatment, it was not continued for patients who tested negative for Lassa fever ("ruled out for Lassa fever").&#x00a0; To avoid confusion, we have revised the sentence to clearly state that individuals with negative RT-PCR results were discontinued from ribavirin treatment and discharged promptly.</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>We believe the main challenge regarding unnecessary antiviral exposure lies in diagnostic limitations, as LF symptoms often mimic those of other infections&#x2014;a point we have discussed in detail.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 8: Keywords. Suggest removing Liberia and Lassa fever since these are in the article title and all terms in the title will be picked up by search engines. And SORT IT may not be a searchable term. Consider adding ribavirin as a term. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>We agree with the reviewer&#x2019;s recommendation and have added ribavirin to the list of key words.</p>
                        </list-item>
                    </list> &#x00a0;
                    <bold>[Introduction Section] </bold>
                </p>
                <p> 
                    <bold>Comment 9: Mastomys natalensis in the third sentence of the &#x2018;Introduction&#x2019; should be written in the standard scientific format as &#x2018;Mastomys natalensis&#x2019;. This same suggestion applies to the Discussion (third paragraph).&#x00a0; </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have revised the manuscript accordingly.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 10: Introduction. Although the prevalence of frequently presenting symptoms in suspected Lassa fever cases is interesting, the more relevant symptoms are those demonstrated in patients who have been confirmed. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>Thanks to the reviewer for the observations. We have included the symptoms reported by confirmed patients aligning with the study's scope { while a retrospective study in 2022 identified fever, fatigue, sore throat, loss of appetite, headache, vomiting, and myalgia as presenting symptoms among confirmed cases&#x00a0; [6,10]</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 11: Introduction. Suggest adding risk factors for mortality from Lassa fever as one of the objectives of this analysis. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have added this objective to the manuscript.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>[Methods Section] </bold>
                </p>
                <p> 
                    <bold>Comment 12: It will be beneficial to the readers of the journal to know the type of cohort study conducted. Kindly specify it is retrospective or prospective (Study Design).</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have specified the type of cohort study as &#x201c;a retrospective cohort study&#x201d;.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 12: Methods, Specific setting. Third line. Suggest rephrasing to &#x201c;...for Lassa fever to identify suspect cases&#x2026;.&#x201d;. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <bold>&#x00a0;</bold>
                                <italic>We have changed detected to &#x201c;identify&#x201d;.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 13: In the context of the first and second sentence of the Specific Setting of the Methods section, please include a phrase/sentence that indicates the reporting tool, means of communication, and timeliness of reporting (window period) employed by the community healthcare workers when reporting suspected cases to the nearest health facility for verification.&#x00a0; &#x00a0;</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have updated the section as follows: At the community level, community health workers identified potential Lassa fever cases using the community/simplified case definition. Potential cases were referred to the nearest health facility for verification using the community trigger and referral form, detailing initial assessment to the nearby health facility. Referrals were made immediately or within 24 hours of identification, with a phone call or written message delivered to the nearby health facility.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 14: Although this sentence (In the Study Settings section), &#x2018;The IDSR case alert and laboratory submission forms were then completed and finally samples were collected&#x2019;, is understood by the reviewer, for clarification and non-assumption by readers of the journal, the authors should indicate the specific type of sample that was collected from the patients for Lassa fever testing. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have added &#x201c;whole blood&#x201d; to indicate the sample types.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 15: Generic drug names should be presented in lower case&#x2014;ribavirin should not be capitalized. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have revised accordingly.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 16: Were there specific selection criteria for the use of ribavirin? &#x201c;&#x2026; </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>Yes, ribavirin was administered only to suspected Lassa fever cases while awaiting laboratory test results and continued for confirmed cases but the treatment was discontinued for individuals with a negative result. We have clarified this in the methods section as&#x201d; While awaiting the laboratory test results, individuals were isolated and admitted to a treatment center where IV ribavirin treatment was initiated if they were classified as &#x201c;suspected Lassa fever patients&#x201d;.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 17: Concerning this statement, &#x2018;Daily assessments were performed using charts to monitor the patients&#x2019; progress&#x2019;, please specify (concisely) the assessments done. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have revised the sentence as follows: Daily assessments were conducted, including routine examinations such as physical exams, vital signs monitoring, malaria tests, and other relevant checks, using charts to track the patients' progress.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 18: Please rephrase the statement &#x2018;Individuals with negative results were discharged immediately after the Ribavirin treatment was discontinued&#x2019; to something like &#x2018;Individuals with negative results after a repeat RT-PCR testing were discharged immediately after the ribavirin treatment was discontinued.&#x2019; If this is not what the authors are trying to convey, kindly clarify. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>There was no repeat of the RT-PCR test before discharging the patients. Once the results from the National Public Health Reference Laboratory were negative, the patient was discharged accordingly, and the ribavirin treatment was discontinued. &#x00a0;We have clarified this as follows: Individuals with negative RT-PCR results were discontinued from ribavirin treatment and discharged immediately.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 19: Kindly expound the phrase &#x2018;and selected treatment centers&#x2019; in the sentence &#x2018;Due to incomplete information in some records, we reconciled the data using the county surveillance database and selected treatment centers.&#x2019; Succinctly expand the phrase to provide more context to readers. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We agree with the reviewer and have revised the manuscript as &#x201c;Due to incomplete information in some patient records submitted at the national level, we reconciled the data using the county surveillance database. We opted for four sites instead of all eight because these were the sites where majority of the cases were reported from and reviewing records from these sites would address the incomplete record issue or data quality issues in the existing data set used for the study.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 20: Statistical analysis. The sentence &#x2018;We used log binomial regression to assess the association between socio-demographics, clinical characteristics, and case fatality rates&#x2019; should be revised to &#x2018;We used log binomial regression to assess the association between socio-demographics, clinical characteristics, and mortality.&#x2019; CFR is a population-level indicator, and it appears the authors inadvertently substituted this in place of mortality. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>The reviewer&#x2019;s observation is highly appreciated and we have revised the manuscript.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 21: Statistical analysis. The term risk ratio should be in lower case. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We agree with the reviewer and revised accordingly.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>[Results Section] </bold>
                </p>
                <p> </p>
                <p> 
                    <bold>Comment 22: Results. Second sentence. Missing a period at the end of the sentence. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have added the period.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 23: Results. The authors revealed that some individuals were excluded in the statement &#x2018;Among 439 individuals, about one quarter (26%, 116/439) were excluded due to missing data on date of symptom onset or admission&#x2019;. Specify what the individuals were excluded from, e.g., from the regression analyses or Table 2. Kindly clarify.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have revised the manuscript.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 24: Results. The utility of the data in Table 2 is relatively limited. The median time from symptom onset to hospital admission was similar across age groups (by a day or two), gender (half a day), and county (except Nimba). This table could be removed and a sentence or two added to the Results to describe the major findings.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We appreciate the comment/recommendation and have revised the manuscript.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 25: In Table 4, was there any reason why Bong County was selected as the reference group? Or was the county selected randomly? </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>As a common practice in modelling, we statistically selected the county with the highest number of cases to enhance interpretability and statistical power.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 26: Results. It would be interesting and potentially informative to compare patients who had confirmed Lassa fever (PCR+) who received ribavirin vs. those who did not receive this antiviral treatment. Are there any significant differences in their clinical or demographic characteristics? </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>Thanks for the comment. We did not compare patients with confirmed LF (PCR+) who received ribavirin versus those who did not because this was not the focus of our study. However, in our regression analysis, we assessed the effect of ribavirin treatment on outcomes. We have added a sentence that there was no significant difference between those who received treatment and those who did not. We hope this addresses the concern.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 27: Table 4, Ribavirin treatment (yes or no) was not included in the bivariate and multivariable models. Historical data and corresponding studies have shown a decrease in mortality among those administered (especially within 6 days from symptom onset). For comprehensiveness, it would be important to explore and demonstrate the associations between the administration of the treatment and mortality. Additionally, the adjusted (multivariable) models with its findings would have more validity if this was also accounted for. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have included a variable &#x201c;ribavirin treatment&#x201d; in the regression analysis</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>We could not analyze the onset of symptoms and treatment initiation because we do not have the data. We have included it as a limitation.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 28: Table 4. The authors used a reference cutoff of 7 days to assess the association between duration from symptom onset to hospital presentation. However, we recommend the authors to explore the 4 days as the reference cutoff. Earlier in the results section, the authors reported the median symptom-hospital duration to be 4 days with an IQR of 2 to 7. For validity reasons, kindly conduct an exploratory analysis/sensitivity analysis to explore this new cutoff.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We appreciate the reviewer&#x2019;s recommendation. We have revised the manuscript to include (1-3 days, and 4-6 days) for the duration from symptom onset to hospital admission.</italic>
                            </p>
                        </list-item>
                    </list> &#x00a0;
                    <bold>[Discussion Section] </bold>
                </p>
                <p> 
                    <bold>Comment 29: The abbreviation CFR was introduced much earlier in the manuscript. It should be used on the first and third lines of the beginning of the Discussion. Also, we recommend using the term &#x2018;patients&#x2019; rather than cases in the first sentence of the Discussion.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have updated the manuscript.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 30: As noted earlier, the group with suspected Lassa fever who were not confirmed is likely a mixture of different etiological agents. Suggest removing the last sentence of the first paragraph of the Discussion for this reason. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We appreciate the comment. However, as stated earlier, it is concerning for individuals who are suspected of having Lassa fever, test negative, and yet still die, without a clear understanding of the cause. Therefore, we aimed to use these findings to recommend further research into the causes of death among patients who test negative for Lassa fever which is not reported in literature.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 31: The last statement of the second paragraph &#x2018;Additionally, effective community infection prevention control programmes in endemic areas might be of help&#x2019; is quite vague. The authors (in their recommendation) should kindly be specific in who implements and ensures the effectiveness of the community IPC programmes. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We totally agree with the reviewer&#x2019;s comment/suggestion and have specified who does the implementation as &#x201c;Additionally, effective community infection prevention control programmes in endemic areas by the Ministry of Health and the National Public Health Institute of Liberia might be of help&#x201d;</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 32: In the third paragraph, in the third and second to last lines, might be better to state &#x201c;A clean environment in both the house and outside environment...&#x201d; </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We agree with the reviewer&#x2019;s comment/suggestion and have revised the manuscript &#x201c;A clean environment in both the house and the outside environment might help to reduce the contact between rats and humans&#x201d;.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 33: Additional information is required for this statement &#x2018;Similar to other studies, the CFR was higher among elderly people. However, the reasons for this are unclear, warranting further research in understanding the occurrence.&#x2019; Yes, additional studies are warranted to better understand the pathophysiological mechanism contributing to the high CFR among elderly population. However, the authors should state possible reasons for high CFR being demonstrated among this population, e.g. comorbidities, waning immunity, etc. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We appreciate the reviewer&#x2019;s comment and have revised the manuscript.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 34: The statement &#x2018;The high CFR in Nimba could be due to the fact that the county is endemic for Lassa fever, with the majority of cases detected at the health facility rather than through early community detection, which impacts on early treatment&#x2019; is a bit conflicting with your earlier report. In the results section, the authors observed that Nimba had the shortest median time (&lt;1 day) from symptom onset to hospital admission. Kindly reconcile the two statements and re-phrase accordingly.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We totally agree and appreciate the reviewer for this observation and recommendation. The high CFR in Nimba could be likely due to the fact that cases presenting with fever are sometimes or most times being treated for malaria because of their presentations before suspecting Lassa fever, which impacts treatment outcome among the patients</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>We have revised the manuscript accordingly</italic>.</p>
                        </list-item>
                    </list> </p>
                <p> 
                    <bold>Comment 35: We suggest the authors re-phrase this statement &#x2018;leading to unnecessary admissions and ribavirin use as well as delayed appropriate treatment&#x2019; to &#x2018;leading to unnecessary admissions and ribavirin use as well as delays in receiving appropriate treatment.&#x2019; </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We agree and have accordingly revised the manuscript.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 36: The findings of the study highlighted a notable concentration of cases in Bong, Grand Bassa, and Nimba Counties. However, the authors did not provide or suggest possible explanations or hypotheses for these observations. Also, Figure 2 illustrates that these three Counties are adjacent to each other. Therefore, it would be beneficial for readers if the authors could delve into the potential influence of infected individuals migrating across County borders. This exploration could shed light on how population movements might contribute to the spread of Lassa fever in this region, offering valuable insights into disease dynamics and transmission patterns. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have revised as &#x201c;These counties are endemic to Lassa fever and adjacent to each other, which likely has potential influence of infected individuals to migrate across the borders due to intermarriages, farming activities, and in search of jobs.&#x00a0; Thus, contributing to the spread of Lassa fever in these regions&#x201d;</italic>.</p>
                        </list-item>
                    </list> &#x00a0;
                    <bold>Comment 37: In the paragraph that describes the need for improved strategies, it might be useful to describe the need for a rapid point-of-care test for Lassa fever since this would be so helpful to triage patients for infection control purposes and treatment (especially if more effective antivirals become available).</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have recommended a rapid point of care test for Lassa fever.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>References: </bold>
                </p>
                <p> 
                    <bold>Comment 38: There is no need to include Indian Council of Medical Research in the first citation. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have revised accordingly.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 39</bold>: 
                    <bold>Lassa should be capitalized in the third citation. </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>The comment has been acted upon accordingly.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 40: Several of the article titles are presented in title case rather than having just the first letter capitalized (e.g., citation 7, 11, 12, and 21). </bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have addressed the comment.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Comment 41: There is a duplicate of Balogun OO et al. This is presented as reference 7 and 14.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We thank the reviewer for this observation and we have rectified it.</italic>
                            </p>
                        </list-item>
                    </list> 
                    <bold>Is the work clearly and accurately presented and does it cite the current literature?</bold>
                </p>
                <p> 
                    <bold>Yes</bold>
                </p>
                <p> 
                    <bold>Is the study design appropriate and is the work technically sound?</bold>
                </p>
                <p> 
                    <bold>Yes&#x00a0; </bold>
                </p>
                <p> 
                    <bold>Are sufficient details of methods and analysis provided to allow replication by others?</bold>
                </p>
                <p> 
                    <bold>Yes</bold>
                </p>
                <p> 
                    <bold>If applicable, is the statistical analysis and its interpretation appropriate?</bold>
                </p>
                <p> 
                    <bold>Partly</bold>
                </p>
                <p> 
                    <bold>Are all the source data underlying the results available to ensure full reproducibility?</bold>
                </p>
                <p> 
                    <bold>No</bold>
                </p>
                <p> 
                    <bold>Are the conclusions drawn adequately supported by the results?</bold>
                </p>
                <p> 
                    <bold>Yes</bold>
                </p>
                <p> 
                    <bold>Competing Interests</bold>
                </p>
                <p> 
                    <bold>No competing interests were disclosed. </bold>
                </p>
                <p> 
                    <bold>Reviewer Expertise</bold>
                </p>
                <p> 
                    <bold>Emerging infectious diseases, antimicrobial resistance, malaria, Chagas disease</bold>
                </p>
                <p> 
                    <bold>We confirm that we have read this submission and believe that we have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however we have significant reservations, as outlined above.</bold>
                </p>
            </body>
        </sub-article>
    </sub-article>
</article>
