<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.150685.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Deciphering the significance of neutrophil to lymphocyte and monocyte to lymphocyte ratios in tuberculosis: A case-control study from southern India</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved with reservations, 1 not approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Bakshi</surname>
                        <given-names>Poorva</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0009-0007-0888-1614</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Nayak</surname>
                        <given-names>Rakshatha</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-7257-1465</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Rai</surname>
                        <given-names>Sharada</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Jayasheelan</surname>
                        <given-names>Shikha</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0009-0008-2554-7711</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Pathology, Kasturba Medical College, Mangalore, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:rakshatha.nayak@manipal.edu">rakshatha.nayak@manipal.edu</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>5</day>
                <month>7</month>
                <year>2024</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2024</year>
            </pub-date>
            <volume>13</volume>
            <elocation-id>747</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>27</day>
                    <month>6</month>
                    <year>2024</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Bakshi P et al.</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/13-747/pdf"/>
            <abstract>
                <sec>
                    <title>Background</title>
                    <p>Diagnosis of tuberculosis (TB) in resource-limited countries relies primarily on bacteriological confirmation using Ziehl-Neelsen (ZN) stain or culture. However, this method has low sensitivity due to suboptimal sampling and techniques. Neutrophils, monocytes, and lymphocytes are crucial in the pathogenesis of granulomatous inflammation and immune reactions. We investigated the usefulness of the haematological parameters and their ratios, like the Neutrophil to Lymphocyte ratio (NLR) and Monocyte to Lymphocyte ratio (MLR), for diagnosing tuberculosis.</p>
                </sec>
                <sec>
                    <title>Methods</title>
                    <p>We retrospectively grouped 114 patients with fever into those diagnosed with TB and control groups. We obtained their haematological data and calculated their derived ratios. The ratios obtained from the two groups were compared. Their sensitivity and specificity were calculated.</p>
                </sec>
                <sec>
                    <title>Results</title>
                    <p>Haematological parameters like MLR were higher in TB patients than in the control group. Although NLR was not significantly increased, MLR was significantly increased with p values &lt;0.05. These tests had low sensitivity but high specificity.</p>
                </sec>
                <sec>
                    <title>Conclusion</title>
                    <p>Serum NLR and MLR emerge as valuable tools in TB diagnosis. Their simplicity and cost-effectiveness render them particularly suitable for screening and recurrence monitoring in rural and remote settings, thereby mitigating loss to follow-up.</p>
                </sec>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>NLR</kwd>
                <kwd>MLR</kwd>
                <kwd>Tuberculosis</kwd>
                <kwd>Infectious diseases</kwd>
                <kwd>Hematology</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec5" sec-type="intro">
            <title>Introduction</title>
            <p>Tuberculosis (TB) is a chronic disease caused by the bacterium Mycobacterium tuberculosis, which has led to significant mortality and morbidity worldwide. Global statistics indicate that 10 million people have been diagnosed with TB.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> In particular, India bears the highest burden of TB, with an estimated 26.4 lakh cases.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> The impact of socioeconomic factors on TB outcomes in India has been well-documented.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup>
            </p>
            <p>The most common, rapid, and cost-effective diagnostic method for TB in India is the microscopic detection of Acid-Fast Bacilli (AFB) using Ziehl-Neelsen (ZN) staining. However, this method&#x2019;s sensitivity decreases when the bacterial load is less than 10,000 bacilli/ml, and it requires high-quality and large samples.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> Nucleic acid amplification tests (NAAT), which are more sensitive, are typically conducted in tertiary centers but are limited in rural areas of developing countries due to resource constraints.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup> While the National Health Mission guidelines suggest diagnosing and treating TB based on high clinical suspicion, studies indicate lower survival rates among patients who receive empirical TB treatment compared to those with laboratory-confirmed TB infection.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> Despite being curable, late diagnosis, ineffective treatment, and loss of follow-up can result in relapse or the development of multidrug-resistant tuberculosis (MDR-TB) or extensively drug-resistant tuberculosis (XDR-TB). Late detection is primarily due to the unavailability of cost-effective and rapid tests in rural areas, exacerbating the TB burden in India. Loss of follow-up and relapse are often attributed to difficulties in accessing these tests. Timely, accurate, and affordable diagnostics are crucially needed, as delays in diagnosis can worsen outcomes and increase transmission rates.</p>
            <p>TB is characterized by granulomatous inflammation and caseous necrosis, with neutrophils playing a significant role in its pathogenesis.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> Activated macrophages release tumor necrosis factor (TNF) and chemokines, recruiting more monocytes and ultimately leading to the death of the mycobacterium.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> Hematological parameters such as neutrophils, lymphocytes, and monocytes exhibit variations in TB patients.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> In recent years, ratios derived from various hematological parameters have been explored as markers of inflammation in multiple diseases. NLR and MLR have demonstrated both diagnostic and prognostic value in TB.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> These tests are simple, rapid, cost-effective, and readily available even in rural areas, promising potential as adjunctive biomarkers for diagnosing and screening clinically suspected TB patients and detecting relapse in patients under follow-up.</p>
        </sec>
        <sec id="sec6" sec-type="methods">
            <title>Methods</title>
            <p>This is an analytical observational case-control study. The study was conducted at our tertiary hospital in Karnataka state of South India, from June to August 2022. The study included inpatients and outpatients who presented with a fever, had undergone laboratory tests in our institutional hospital to rule out tuberculosis, and had adequate clinical data. All terminally ill patients, patients with known comorbidities and on treatment were excluded from the study. The sampling process involved two stages. At first, a non-probability, convenience sampling method was employed to identify potential participants based on their presentation with fever and undergoing TB testing. Subsequently, purposive sampling was applied to select participants, strictly meeting the inclusion and exclusion criteria to minimize selection bias and ensure the representation of relevant clinical characteristics within each group. In this study, an effect size of 0.5 was chosen based on prior knowledge or expected differences in the variables under investigation, and a power of 80% (or 0.80) was selected. Kelsey&#x2019;s formula was employed to calculate the sample size required for each group. This formula incorporates the effect size, power, and significance level to determine the minimum sample size needed to detect a significant difference between groups. A minimum sample size of 55 participants per group was calculated and deemed sufficient to detect the specified effect size with the chosen power level. The patients were divided into a TB group if the patients had a fever and tested positive for TB either by AFB culture, ZN stain, or NAAT and a control group if patients had a fever but tested negative for TB by the above-mentioned methods. The clinical details were procured from the case files. For the hematologic evaluation, for all groups, the following blood parameters: differential neutrophil, lymphocyte, and monocyte counts, were measured by an automated haematology analyser. The NLR was calculated by dividing the differential neutrophil count by the differential lymphocyte count, and the MLR by dividing the differential monocyte count by the differential lymphocyte count. Data was collected from laboratory software or case files and presented as mean&#x00b1;standard deviation (SD). It was recorded using Microsoft Excel. Statistical Package for the Social Sciences, version 29 software was used for statistical analysis. The T-test was used for continuous variables, and the chi-square test for categorical variables. A p-value of &lt;0.05 was considered statistically significant.</p>
            <sec id="sec7">
                <title>Ethics and consent</title>
                <p>We obtained approval from the Institutional Ethics Committee. (Kasturba Medical College, Mangalore), Reg. No. ECR/541/Inst/KA/2014/RR-20, DHR Reg. No. EC/NEW/INST/2020/742 with Protocol No. IECKMCMLR-11/2021/343. The approval was given on 17
                    <sup>th</sup> November 2021. The committee permitted a waiver of consent to participate from the patients as patient details and data were sourced from case files, and tracing the patients proved challenging.</p>
            </sec>
        </sec>
        <sec id="sec8" sec-type="results">
            <title>Results</title>
            <p>In total, 114 cases were included in the study, evenly distributed between the TB group (n=57) and the control group (n=57). Key hematologic markers assessed included Neutrophils, Lymphocytes, and Monocytes, with Neutrophil to Lymphocyte Ratio (NLR) and Monocyte to Lymphocyte Ratio (MLR) derived for each participant.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup>
            </p>
            <p>Differential lymphocyte counts were found to be significantly elevated in TB cases compared to controls (P value=0.048), while MLR showed a significant increase in TB cases compared to controls (P value=0.031). However, no significant differences were observed in the counts of Neutrophils, Monocytes, and NLR between TB cases and controls. To distinguish between TB patients and controls, the cut-off values were established using Receiver Operating Characteristic (ROC) curve analysis. The cut-off value for NLR was set at &gt;5 (
                <xref ref-type="fig" rid="f1">Figure 1</xref>), while for MLR, it was set at &gt;0.5 (
                <xref ref-type="fig" rid="f2">Figure 2</xref>). Individually, NLR and MLR exhibited limited sensitivity in predicting TB, but demonstrated better specificity. However, when combining these parameters, there was significant increase in specificity, as shown in 
                <xref ref-type="table" rid="T1">Table 1</xref>.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup>
            </p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>ROC curve for NLR.</title>
                </caption>
                <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/165277/0236d111-b745-4c0b-8f28-e1bcb08fca76_figure1.gif"/>
            </fig>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>ROC curve for MLR.</title>
                </caption>
                <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/165277/0236d111-b745-4c0b-8f28-e1bcb08fca76_figure2.gif"/>
            </fig>
            <table-wrap id="T1" orientation="portrait" position="float">
                <label>Table 1. </label>
                <caption>
                    <title>Performance metrics of NLR, MLR, and combined NLR &amp; MLR for predicting tuberculosis.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Metrics</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">NLR</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">MLR</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">NLR &amp; MLR</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Sensitivity %</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">28.0</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">38.6</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">22.8</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Specificity %</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">77.2</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">78.9</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">96.5</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Positive Predictive Value %</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">55.2</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">64.7</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">86.7</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Negative Predictive Value %</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">51.8</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">56.3</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">55.6</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
        </sec>
        <sec id="sec9" sec-type="discussion">
            <title>Discussion</title>
            <p>Tuberculosis remains a significant cause of morbidity worldwide, especially in low-income countries, emphasizing the critical need for accessible and cost-effective diagnostic methods. Despite the availability of rapid tests like the NAAT assay, challenges persist, particularly for diagnosing extra-pulmonary, pediatric, and smear-negative TB cases. Conventional methods such as smear tests are outdated, while serological tests lack accuracy.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup>
            </p>
            <p>Our study focused on key hematological parameters including neutrophil count, lymphocyte count, monocyte count, neutrophil-to-lymphocyte ratio (NLR), and monocyte-to-lymphocyte ratio (MLR) in patients presenting with fever, comparing those diagnosed with TB to others. Previous research has underscored NLR and MLR as significant markers for TB diagnosis and prognosis.
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup>
            </p>
            <p>In our investigation, MLR emerged as a standout parameter, exhibiting a statistically significant increase in TB patients compared to those without TB. This finding underscores the involvement of activated macrophages and monocytes in chronic granulomatous inflammation characteristic of TB. However, contrary to some prior studies, NLR did not demonstrate a significant role in TB diagnosis, possibly due to the involvement of neutrophils in non-granulomatous and acute inflammatory conditions. While NLR and MLR have shown associations with TB disease severity and treatment outcomes in some studies, their predictive value is not universally consistent.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup>
                <sup>&#x2013;</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> Factors like comorbidities, immune status, and TB strain virulence can influence the relationship between these ratios and clinical outcomes. NLR and MLR can also vary significantly between individuals based on factors like age, sex, and ethnicity and can fluctuate over time due to stress, medications, and physiological changes.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup>
            </p>
            <p>While individual hematological parameters showed limited sensitivity, combining MLR and NLR substantially improved sensitivity, specificity, and positive predictive value. This suggests the potential for a combined approach to aid in TB detection.</p>
            <p>Acknowledged study limitations include the lack of information about the diagnosis of the control group with fever, unknown hidden comorbidities, unsuspected infections or immune status of both control and cases, and the unknown virulence of the TB strain, potentially introducing variability in laboratory findings. Other limitations include the possibility of selection bias in the patient selection process despite strict adherence to inclusion and exclusion criteria due to a lack of relevant investigations of the desired population. Notably, individuals with TB who did not present with fever were excluded, potentially limiting the study&#x2019;s representativeness of the TB population.</p>
            <p>Despite these limitations, our study highlights the importance of utilizing hematological parameters, particularly MLR, in TB diagnosis. While these ratios are non-specific, have inter-individual variation and limited predictive value, limiting their reliability as standalone markers of TB severity or treatment response, combining these ratios with established tests like elevated Erythrocyte Sedimentation Rate (ESR) offers promise for TB screening in resource-limited settings.</p>
        </sec>
        <sec id="sec10" sec-type="conclusion">
            <title>Conclusion</title>
            <p>In conclusion, MLR emerges as a promising, cost-effective tool for early TB diagnosis. Utilizing a combined approach with NLR enhances screening efficacy, especially in cases with strong clinical suspicion. Moreover, this combined strategy holds the potential for monitoring patients during follow-up, mitigating relapse risks, and alleviating the TB burden, particularly in underserved regions and rural areas of low-income countries. Variations in study populations, laboratory methods, and analytical techniques contribute to inconsistencies in cutoff thresholds, hindering comparability and generalizability across studies. Therefore this avenue warrants further research to know its hold in clinical implications and also to validate their diagnostic accuracy, prognostic value, and predictive capabilities across diverse patient populations and clinical settings.</p>
        </sec>
    </body>
    <back>
        <sec id="sec13" sec-type="data-availability">
            <title>Data availability statement</title>
            <p>This project contains the following underlying data:
                <list list-type="order">
                    <list-item>
                        <label>1.</label>
                        <p>Data Excel sheet for Deciphering the significance of neutrophil to lymphocyte and monocyte to lymphocyte ratios in tuberculosis: A case-control study from southern India, Figshare: 
                            <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.23684778.v5">https://doi.org/10.6084/m9.figshare.23684778.v5</ext-link>

                            <sup>

                                <xref ref-type="bibr" rid="ref18">18</xref>
</sup>
                        </p>
                    </list-item>
                    <list-item>
                        <label>2.</label>
                        <p>Statistical analysis of Deciphering the significance of neutrophil to lymphocyte and monocyte to lymphocyte ratios in tuberculosis: A case-control study from southern India, Figshare: 
                            <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.23684859.v5">https://doi.org/10.6084/m9.figshare.23684859.v5</ext-link>

                            <sup>

                                <xref ref-type="bibr" rid="ref19">19</xref>
</sup>
                        </p>
                    </list-item>
                </list>
            </p>
            <p>Data are available under the terms of the 
                <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/">Creative Commons Zero &#x201c;No rights reserved&#x201d; data waiver</ext-link> (CC0 1.0 Public domain</p>
        </sec>
        <ref-list>
            <title>References</title>
            <ref id="ref1">
                <label>1</label>
                <mixed-citation publication-type="other">
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                </mixed-citation>
            </ref>
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                <label>2</label>
                <mixed-citation publication-type="other">
                    <collab>TBFacts</collab>:
                    <article-title>TB Statistics, India.</article-title>[Accessed 9 February 2022].
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                        <name name-style="western">
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</person-group>:
                    <source>

                        <italic toggle="yes">Social determinants of tuberculosis: context, framework, and the way forward to ending TB in India.</italic>
</source>
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    <sub-article article-type="reviewer-report" id="report336227">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.165277.r336227</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Kusmiati</surname>
                        <given-names>Tutik</given-names>
                    </name>
                    <xref ref-type="aff" rid="r336227a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r336227a1">
                    <label>1</label>Universitas Airlangga &#x2013; Dr. Soetomo General Academic Hospital, Surabaya, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>13</day>
                <month>11</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Kusmiati T</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport336227" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.150685.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>in abstract: I agree that ZN has low sensitivity, but the culture sensitivity is very good.</p>
            <p> </p>
            <p> in introduction: In the introduction: you only wrote the reason for studying MLR because ZN is not sensitive and the source of funds for molecular examination is expensive. In my opinion, a more appropriate reason is: the difficulty of obtaining sputum samples to evaluate treatment because in more than 2 weeks of treatment the patient's complaints have decreased so that it is difficult to produce sputum because they are no longer coughing</p>
            <p> </p>
            <p> in Method: In the control group that was included only fever, why was the cough not asked, why was a chest X-ray not performed to rule out that the patient really did not have TB?</p>
            <p> As we know, there is clinically confirmed TB, namely if there are complaints that point to TB, the CXR results support TB but the bacteriological results are negative.&#x00a0;</p>
            <p> To minimize bias, do you exclude patients with Diabetes and HIV because they are immunocompromised patients which can affect MMR and NLR values?</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Partly</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Pulmonology and Respiratory Medicine</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment13046-336227">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Nayak</surname>
                            <given-names>Rakshatha</given-names>
                        </name>
                        <aff>Kasturba Medical College Hospital, India</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>There are no competing interests</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>30</day>
                    <month>12</month>
                    <year>2024</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Dear Madam,</p>
                <p> Thank you for reviewing our article and providing valuable feedback. In response to your suggestions, we have made the following revisions: 
                    <list list-type="order">
                        <list-item>
                            <p>We have revised the abstract to mention the other disadvantages of AFB culture, as opposed to focusing solely on its sensitivity, as per your recommendation.</p>
                        </list-item>
                        <list-item>
                            <p>We agree with your point that obtaining sputum can be difficult in patients who do not present with a cough. We have added this concern as an additional point in the introduction to highlight the challenges involved.</p>
                        </list-item>
                        <list-item>
                            <p>The study involved all patients presenting with fever, including those with extrapulmonary TB. Therefore, while we did inquire about symptoms such as cough and other clinical features, these were not specifically emphasized in the article. Following your suggestion, we have now included this information under the inclusion criteria in the methodology section (Version 2).</p>
                        </list-item>
                        <list-item>
                            <p>We selected controls based on clinical, radiological, microbiological, and molecular findings to ensure that only true negative TB cases were included. We did not include TB patients without fever, as the subjects were selected from a fever OPD, which is mentioned in the study's limitations under discussion. Despite this limitation, we believe the study remains highly relevant, given that fever is the most common symptom in both pulmonary and extrapulmonary TB cases.</p>
                        </list-item>
                        <list-item>
                            <p>We have excluded patients with known comorbidities as mentioned in Version 1. But as per your suggestion, we have specified few such as diabetes and HIV, as noted in the exclusion criteria section of the article in version 2.</p>
                        </list-item>
                        <list-item>
                            <p>The article has been revised in accordance with the suggestions provided by the reviewers. We kindly request you to review the updated version of the article and share your valuable comments and approval. We have put sincere efforts into refining the study to enhance its accuracy and applicability, particularly in remote areas, to help reduce the global burden of tuberculosis.</p>
                        </list-item>
                    </list> We look forward to your feedback.</p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report308652">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.165277.r308652</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Gatechompol</surname>
                        <given-names>Sivaporn</given-names>
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                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-9511-370X</uri>
                </contrib>
                <aff id="r308652a1">
                    <label>1</label>HIV-NAT, Thai Red Cross AIDS Research Centre, Bangkok, Thailand</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>21</day>
                <month>8</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Gatechompol S</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport308652" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.150685.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>reject</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>I am pleased to review this work. This is a case-control study in a tertiary hospital in India.&#x00a0;The study aimed to assess&#x00a0;the usefulness of &#x00a0;Neutrophil to Lymphocyte ratio (NLR) and Monocyte to Lymphocyte ratio (MLR) for diagnosing tuberculosis.</p>
            <p> I have some comments as following</p>
            <p> </p>
            <p> Methods</p>
            <p> 1. The TB case definition is not clear. Which type of TB were included in the study (i.e pulmonary, extrapulmonry, or both) ?&#x00a0;</p>
            <p> 2. What is the HIV status of the participants ? Since HIV has direclty effect on &#x00a0;both NLR and MLR. &#x00a0;</p>
            <p> 3. The patients who had fever but tested negative for TB by AFB culture, ZN stain, or NAAT&#x00a0;were assigned to the control group. How can the authors exclude smear/culture negative TB for this group ?&#x00a0;</p>
            <p> </p>
            <p> &#x00a0;Results&#x00a0;</p>
            <p> 1.&#x00a0;The authors mentioned in discussion that NLR and MLR can also vary significantly between individuals based on factors like age, sex, and ethnicity. But the authors did not provide these informations in the results or compare between cases and controls.&#x00a0;&#x00a0;</p>
            <p> </p>
            <p> </p>
            <p> </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Partly</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>No</p>
            <p>Reviewer Expertise:</p>
            <p>Infectious disease, focus on TB and HIV</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to state that I do not consider it to be of an acceptable scientific standard, for reasons outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment13045-308652">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Nayak</surname>
                            <given-names>Rakshatha</given-names>
                        </name>
                        <aff>Kasturba Medical College Hospital, India</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>There are no competing interests</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>30</day>
                    <month>12</month>
                    <year>2024</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Dear Madam,</p>
                <p> Thank you for reviewing our article and providing us with your valuable insights. In response to your suggestions, we have made the following revisions: 
                    <list list-type="order">
                        <list-item>
                            <p>The study included all patients with fever, encompassing both pulmonary and extrapulmonary TB cases. This information has been added to the inclusion criteria in the methodology section.</p>
                        </list-item>
                        <list-item>
                            <p>We have excluded patients with known comorbidities as mentioned in Version 1. But as per your suggestion, we have specified few such as diabetes and HIV, as noted in the exclusion criteria section of the article in version 2</p>
                        </list-item>
                        <list-item>
                            <p>The controls were classified as true negatives after evaluating all clinical, radiological, microbiological, and molecular findings. This update has been reflected in the methodology section.</p>
                        </list-item>
                        <list-item>
                            <p>There was no significant difference between age groups or sexes, and we have updated the results accordingly. Regarding ethnicity, we acknowledge the complexity of making comparisons in India due to the immense diversity across ethnic, linguistic, religious, and cultural lines, as well as historical, social, political, and genetic factors. As such, broad comparisons or generalizations about ethnicity would oversimplify the situation, and we have refrained from including such comparisons in the article.</p>
                        </list-item>
                        <list-item>
                            <p>The article has been updated as per the suggestions provided by the reviewers. We kindly request you to review the updated version of the article and share your valuable feedback and approval. We have put sincere efforts into refining the study to enhance its accuracy and applicability, particularly in remote areas, to help reduce the global burden of tuberculosis.</p>
                        </list-item>
                    </list> We look forward to your feedback.</p>
            </body>
        </sub-article>
    </sub-article>
</article>
