<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.152800.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>The effect of soaking heat-polymerized acrylic resin denture base in avocado seed extract (
                    <italic>Persea americana </italic>Mill.) on the inhibition of denture-plaque microorganisms biofilm growth</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved with reservations, 1 not approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Angela</surname>
                        <given-names>Thalia</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0009-0000-3692-545X</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Wahyuni</surname>
                        <given-names>Siti</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Halim</surname>
                        <given-names>Susanna</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0009-0000-3692-545X</uri>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Dental Undergraduate Study Program, Faculty of Dentistry, University of Sumatera Utara, Medan, North Sumatra, Indonesia</aff>
                <aff id="a2">
                    <label>2</label>Department of Prosthodontics, University of Sumatera Utara, Medan, North Sumatra, Indonesia</aff>
                <aff id="a3">
                    <label>3</label>Faculty of Medicine, Dentistry and Health Sciences, Prima Indonesia University, Medan, North Sumatra, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:siti.wahyuni@usu.ac.id">siti.wahyuni@usu.ac.id</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>20</day>
                <month>8</month>
                <year>2024</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2024</year>
            </pub-date>
            <volume>13</volume>
            <elocation-id>933</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>18</day>
                    <month>7</month>
                    <year>2024</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Angela T et al.</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/13-933/pdf"/>
            <abstract>
                <sec>
                    <title>Background</title>
                    <p>Heat polymerized acrylic (HPA) resins are known to have high porosity that contributes to increased surface roughness and microcrack formation in stress areas. This facilitates the attachment and growth of polymicrobial biofilms contributing to increased antimicrobial resistance. Many research had been carried out on avocado seeds, but no research that studies the effect of avocado seeds on denture-plaque microorganism biofilm on HPA resin has been found.</p>
                </sec>
                <sec>
                    <title>Methods</title>
                    <p>This study used 144 samples (n=144), namely HPA resin discs covered with mono-species and polymicrobial biofilms consisting of 
                        <italic toggle="yes">Candida albicans, Candida glabrata, Actinomyces odontolyticus</italic>, 
                        <italic toggle="yes">Streptococcus gordonii</italic>, and 
                        <italic toggle="yes">Staphylococcus aureus.</italic> The discs were soaked for 8 hours in the 5%, 10%, 15%, 20% avocado seed extract, positive control (alkaline peroxide), and negative control (aquadest). Each disc was shaken with a vortex mixer for 1 minute, and 100 &#x03bc;L was added into 96-well microplates with three times repetition and incubated for 24 hours. The inhibition values were determined from the percentage inhibition value formula which required absorption values from a microplate reader (595 nm).</p>
                </sec>
                <sec>
                    <title>Results</title>
                    <p>In this research, it was found that the MBIC
                        <sub>50</sub> of avocado seed extract against the mono-species of 
                        <italic toggle="yes">C. albicans</italic> (5%), 
                        <italic toggle="yes">C. glabrata</italic> (5%), 
                        <italic toggle="yes">A. odontolyticus</italic> (15%), 
                        <italic toggle="yes">S. gordonii</italic> (15%), 
                        <italic toggle="yes">S. aureus</italic> (10%), while against the biofilm was 20%. There was a significant effect of soaking HPA resin in avocado seed extract of 5%, 10%, 15%, 20% on the inhibition of mono-species and polymicrobial biofilms of denture-plaque microorganisms with a value of p&lt;0.001 (p&lt;0.05).</p>
                </sec>
                <sec>
                    <title>Conclusion</title>
                    <p>The MBIC
                        <sub>50</sub> of avocado seed extract in polymicrobial biofilm group was higher than that in the mono-species biofilm groups. Although alkaline peroxide showed higher inhibition value than that of the MBIC
                        <sub>50</sub> in polymicrobial biofilm group, 20% avocado seed extract was effective in inhibiting polymicrobial biofilm because it was able to inhibit more than 50% polymicrobial biofilm.</p>
                </sec>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>heat polymerized acrylic resin</kwd>
                <kwd>avocado seed extract</kwd>
                <kwd>mono-species biofilm</kwd>
                <kwd>polymicrobial biofilm</kwd>
                <kwd>denture plaque</kwd>
                <kwd>MBIC</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec5" sec-type="intro">
            <title>Introduction</title>
            <p>The denture base is a part of the denture which rests on the supporting tissue and serves as a place for the arrangement of tooth elements.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> Denture base materials vary greatly, but the most commonly used and popular material is polymethyl methacrylate acrylic resin (PMMA) with more than 95% of fabricated denture bases are made from acrylic resin.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>
                </sup> Acrylic resin itself has various types, one of which is heat polymerized acrylic resin.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> Heat polymerized acrylic (HPA) resin has better strength properties and a higher degree of polymerization, less residual monomer, and more stable color.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref6">6</xref>
                </sup> However, it still has limitations, some of which have porous properties and high surface roughness which can increase the attachment of fungal and bacterial biofilms.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup>
            </p>
            <p>Colonization in a biofilm requires strong attachment of oral microorganisms by integrating into the salivary pellicle to form plaque on the denture material. Surface roughness and surface free energy are two factors that can promote plaque development.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> Surface roughness of acrylic resin can be reduced by adequate polishing. However, this cannot prevent the build-up of plaque on the denture due to the presence of microporosity in the acrylic resin which cannot be completely avoided.
                <sup>
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> This area of porosity becomes an environment which can protect microorganisms in the biofilm.
                <sup>
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup> In addition, the abiotic surface of the denture causes less exposure of the denture biofilm to the host immune system so that microorganisms can grow without hindrance and have sufficient time to develop into plaque with varying compositions.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
            </p>
            <p>O&#x2019;Donnell et al. (2015) stated that the composition and diversity of dental plaque was different from denture plaque. Denture plaque in the oral cavity was found to be colonized by 
                <italic toggle="yes">Candida</italic> spp. against the denture surface which co-aggregated with bacteria in the oral cavity.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> As many as 60% to 100% of denture wearers were found to carry 
                <italic toggle="yes">Candida</italic> in the oral cavity in higher quantities compared to those who did not wear dentures.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> The commonly found 
                <italic toggle="yes">Candida</italic> species in denture plaque is 
                <italic toggle="yes">Candida albicans.</italic> Another 
                <italic toggle="yes">Candida</italic> species that is found in denture plaque and increases with age is 
                <italic toggle="yes">Candida glabrata.</italic> Together with 
                <italic toggle="yes">C. albicans</italic>, these two fungal species can form more pathogenic and invasive biofilms and increase the severity of denture stomatitis.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> Several studies have found that denture plaque compared to dental plaque has a higher proportion of obligate anaerobic 
                <italic toggle="yes">Actinomyces</italic> spp., a low proportion of Gram-negative rods, and the common presence of 
                <italic toggle="yes">Staphylococcus aureus</italic> a.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> Shi et al. (2016) found that the genus of bacteria which was most commonly found on both surfaces of denture teeth and remaining natural teeth was the genus 
                <italic toggle="yes">Actinomyces</italic>, followed by 
                <italic toggle="yes">Streptococcus</italic>, 
                <italic toggle="yes">Veillonella</italic>, 
                <italic toggle="yes">Capnocytophaga</italic>, 
                <italic toggle="yes">Neisseria</italic>, 
                <italic toggle="yes">Prevotella</italic>, and 
                <italic toggle="yes">Corynebacterium.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> Based on the genus mentioned, the bacterial species which will be used in this study were 
                <italic toggle="yes">Actinomyces odontolyticus</italic>, 
                <italic toggle="yes">Staphylococcus aureus</italic>, and 
                <italic toggle="yes">Streptococcus gordonii.</italic>
            </p>
            <p>The presence of these three bacteria in dentures can increase the virulence of 
                <italic toggle="yes">C. albicans</italic> thereby increasing damage and invasion of mucosal tissue which increases the risk of denture stomatitis. Morse et al. (2018) found a significant increase in tissue damage from mixed 
                <italic toggle="yes">Candida</italic> and bacterial biofilms where the composition of the biofilm was broadly the composition of denture plaque.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> The difference between biofilms and planktonic bacteria or fungi is that biofilms are a community of microbial cells enveloped in a matrix, while planktonic bacteria or fungi do not have this matrix layer. The presence of matrix can cause failure of treatment with antimicrobial agents, relapse of infection, and increased mortality.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup> Penetration of antimicrobial agents can be complicated due to the formation of extracellular polysaccharides (EPS) which reduce the permeability of the biofilm thereby protecting microorganisms in the deepest layers of the biofilm from antimicrobial agents, minor mechanical stress, and host immune response.
                <sup>
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>
                </sup> To determine the inhibitory effect of an antimicrobial agent on biofilm formation, it can be done using the Minimum Inhibitory Biofilm Concentration (MBIC), which is almost the same as the MIC. The difference between the two is that MBIC is defined as the lowest concentration of an antimicrobial agent at which there is no time-dependent increase in the average number of cells capable of surviving in the biofilm. Meanwhile, MIC is defined as the lowest concentration of an antimicrobial agent against planktonic microorganisms.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>
                </sup>
            </p>
            <p>To prevent the accumulation of denture plaque, adequate and routine denture cleaning needs to be done. Denture cleaning can be done chemically using alkaline peroxide type denture cleaning agent. However, alkaline peroxide was found not to show stable biofilm cleaning efficacy with previous studies showing that alkaline peroxide was not effective in cleaning biofilm and was only effective in cleaning new plaque.
                <sup>
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref17">17</xref>
                </sup> Therefore, it is necessary to develop a denture cleanser product in solution preparation with natural ingredients that have antimicrobial effects which can effectively clean denture plaque. One example of natural ingredient that can be used as an antimicrobial and antibiofilm agent is avocado seeds.</p>
            <p>Avocados (
                <italic toggle="yes">Persea americana</italic> Mill.) are one of the most popular types of fruit among Indonesian and are widely used as food ingredients (salads, sandwiches, cakes) and drinks (juice, ice cream), cosmetic ingredients, medicines and ornamental plants.
                <sup>
                    <xref ref-type="bibr" rid="ref18">18</xref>
                </sup> However, avocado seeds have no practical use and have not been utilized optimally so they tend to be an organic waste.
                <sup>
                    <xref ref-type="bibr" rid="ref19">19</xref>
                </sup> Avocado seed can actually be used as an antimicrobial agent because of the higher amounts of phytochemical components contained in avocado seed, namely flavonoids, tannins, saponins, and alkaloids, than in avocado skin and pulp, which are 64% in seed, 23% in skin, and 13% in pulp.
                <sup>
                    <xref ref-type="bibr" rid="ref20">20</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref21">21</xref>
                </sup> The inhibitory effects of avocado seed extract has been studied. Anggraini et al. (2017) studied the inhibition zone of avocado seed extract at concentrations of 10%, 20%, 40%, 80%, 100% on the growth of 
                <italic toggle="yes">C. albicans</italic>, and found that the 10% concentration was the most effective concentration in inhibiting 
                <italic toggle="yes">C. albicans.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref22">22</xref>
                </sup> Another study by Talib et al. (2018) tested the effectiveness of avocado seed extract in inhibiting 
                <italic toggle="yes">Streptococcus mutans</italic> at concentrations of 2%, 4%, 6%, 8%, 10% and found that the most effective concentration was 10%.
                <sup>
                    <xref ref-type="bibr" rid="ref23">23</xref>
                </sup>
            </p>
            <p>However, most studies using avocado seed extract were carried out on planktonic bacteria or fungi, which is different from denture plaque in the patient&#x2019;s oral cavity, which is a polymicrobial biofilm that tends to be more resistant to antimicrobial agents. This can be seen in a study by Hamzah et al. (2019) who found an increase in the minimum inhibitory concentration of tannin in polymicrobial biofilms (
                <italic toggle="yes">Escherichia coli</italic>, 
                <italic toggle="yes">Staphylococcus aureus</italic>, 
                <italic toggle="yes">Pseudomonas aeruginosa</italic>, and 
                <italic toggle="yes">Candida albicans</italic>) when compared to the concentration in mono-species biofilms. The minimum inhibitory concentration of tannin in mid-phase polymicrobial biofilms (24 hours) is 1%, while the minimum inhibitory concentration of tannins in mono-species biofilms (24 hours) varies widely, namely 
                <italic toggle="yes">E. coli</italic> (0.125%), 
                <italic toggle="yes">S. aureus</italic> (0.5%), 
                <italic toggle="yes">P. aeruginosa</italic> (0.25%), 
                <italic toggle="yes">C. albicans</italic> (0.5%).
                <sup>
                    <xref ref-type="bibr" rid="ref24">24</xref>
                </sup> Hence, this study aimed to determine the effect of avocado seed extract (
                <italic toggle="yes">Persea americana</italic> Mill.) with concentrations of 5%, 10%, 15%, 20% on denture-plaque microorganisms, which were 
                <italic toggle="yes">Candida albicans</italic>, 
                <italic toggle="yes">Candida glabrata</italic>, 
                <italic toggle="yes">Actinomyces odontolyticus</italic>, 
                <italic toggle="yes">Streptococcus gordonii</italic>, and 
                <italic toggle="yes">Staphylococcus aureus</italic>, in the form of mono-species and polymicrobial biofilms on HPA resin.</p>
        </sec>
        <sec id="sec6" sec-type="methods">
            <title>Methods</title>
            <sec id="sec7">
                <title>Avocado sample</title>
                <p>Avocados were obtained from Brastagi, Karo Regency, North Sumatra Province, Indonesia. The avocado fruit used in this research has been determined by the Medanense Herbarium Plant Systematics Laboratory (MEDA) at the University of Sumatera Utara with letter number 1835/MEDA/2023.</p>
            </sec>
            <sec id="sec8">
                <title>Study design</title>
                <p>This research used in vitro experimental methods with post-test only control group design. The sample used in this research was HPA resin in the shape of a disc with a diameter of 10 mm and a thickness of 2 mm (
                    <xref ref-type="fig" rid="f1">Figure 1</xref>). The number of samples used in this study was determined using Federer formula, hence the number of samples for each group was 4 samples. There were 6 treatment groups in this study which were avocado seed extract groups of 5%, 10%, 15%, 20%, as well as the positive control group (alkaline peroxide) and the negative control group (aquadest). As this research was conducted on mono-species biofilms: 
                    <italic toggle="yes">Candida albicans</italic>, 
                    <italic toggle="yes">Candida glabrata</italic>, 
                    <italic toggle="yes">Streptococcus gordonii</italic>, 
                    <italic toggle="yes">Actinomyces odontolyticus</italic>, 
                    <italic toggle="yes">Staphylococcus aureus</italic>, and on polymicrobial biofilm which is a combination of the five microorganisms, the final total amount sample that would be used in this research was 144 samples (n=144).</p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>Figure 1. </label>
                    <caption>
                        <title>Shape and size of heat polymerized acrylic resin disc.</title>
                    </caption>
                    <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/167602/95192ae2-dd7d-4582-9c53-399876960abf_figure1.gif"/>
                </fig>
            </sec>
            <sec id="sec9">
                <title>Preparation of heat polymerized acrylic resin disc samples</title>
                <p>A disc-shaped brass metal master models with a diameter of 10 mm and a thickness of 2 mm were made to be used as a research sample mould. The dental cuvette, which had been smeared with Vaseline, was poured with a type II blue dental stone gypsum mixture made with a ratio of 300 g of gypsum: 90 mL of water to fill the bottom cuvette while being shaken with a vibrator so that no bubbles were trapped in the mixture. The master models, which had been smeared with vaseline, were then placed in the dough in a cuvette, avoiding the surface of the master models being flat with the gypsum surface. The gypsum was left to harden for &#x00b1; 30-45 minutes and then smeared with vaseline. The upper cuvette was attached to the lower cuvette and filled with the same gypsum mixture as described previously. After the plaster had hardened, the cuvette was opened and the master models were taken out to obtain a mould.</p>
                <p>The surface of the mould was smeared thinly with cold mould seal and left for 10 minutes. The HPA resin mixture was prepared with a weight ratio of 2.5:1. When it reached the dough stage, the acrylic resin mixture was put into the mould, then covered with plastic cellophane along with the top cuvette. The cuvette was pressed slowly with a hydraulic press until the pressure reached 1000 psi. Excess dough was cleaned with dental lecron, then the cuvette was closed and pressed again with a pressure of 2200 psi. The cuvette was reopened and cleaned of excess acrylic resin mixture. The cuvette was closed again and locked with the cuvette bolts, then left for 30 minutes. The cuvette was inserted into a water bath filled with aquadest, then the temperature and time were set at 70&#x00b0;C for 90 minutes, then at 100&#x00b0;C for 30 minutes. After 30 minutes, the cuvette was left in the water bath until the water reached room temperature for the cuvette cooling process. The samples were removed from the cuvette, then the sharp parts and plaster residue were trimmed with a fraser bur and sand paper.</p>
            </sec>
            <sec id="sec10">
                <title>Avocado seed extraction procedure</title>
                <p>Avocado seeds were extracted using a maceration technique. The avocado seeds would be cut into slices which would be dried in a drying cabinet at a temperature of &#x00b1;40&#x00b0;C for about 24 hours, then coarsely grounded and blended until they became a fine powder. The avocado seed powder was put into a vessel and poured with 70% ethanol solvent with a ratio of 1:10 (10 g: 100 mL), then stirred until evenly mixed and left for 1&#x00d7;24 hours protected from light while stirring periodically every 6 hours so that the solution was evenly mixed. The solution was filtered until macerate I was obtained and the remaining filtered dregs were subjected to a second maceration process. The results of macerate I and II would be mixed and transferred into a closed vessel, then left in a cool place protected from light for 2&#x00d7;24 hours. The extract was concentrated using a rotary evaporator at a temperature of &#x00b1;50&#x00b0;C to evaporate the solvent until a thick extract was obtained. The thick extract was then made into a concentration of 5%, 10%, 15%, 20%.</p>
            </sec>
            <sec id="sec11">
                <title>Phytochemical examination and quantitative test of phytochemical compounds of avocado seed extract</title>
                <p>The thick extract of avocado seeds was sent to the Pharmaceutical Biology Laboratory, University of Sumatera Utara, Medan for phytochemical examination and quantitative testing of phytochemical compounds.</p>
            </sec>
            <sec id="sec12">
                <title>Microorganisms and culture conditions</title>
                <p>The microorganisms used in this study were cultured and maintained under the following conditions. 
                    <italic toggle="yes">Candida albicans</italic> ATCC
                    <sup>&#x00ae;</sup> 24433
                    <sup>TM</sup> and 
                    <italic toggle="yes">Candida glabrata</italic> ATCC
                    <sup>&#x00ae;</sup> 90030
                    <sup>TM</sup> were each cultured on Sabouraud Dextrose Agar (SDA) with yeast nitrogen base supplemented with 100 mmol L
                    <sup>&#x2212;1</sup> glucose and cultured at 37&#x00b0;C under aerobic conditions for 24 hours. 
                    <italic toggle="yes">Actinomyces odontolyticus</italic> ATCC
                    <sup>&#x00ae;</sup> 10558
                    <sup>TM</sup> was cultured on fastidious anaerobe agar with 5% (v/v) defibrinated bovine blood at 37&#x00b0;C under anaerobic conditions for 24 hours. 
                    <italic toggle="yes">Streptococcus gordonii</italic> ATCC
                    <sup>&#x00ae;</sup> 10558
                    <sup>TM</sup> was cultured on blood agar with 5% (v/v) defibrinated bovine blood at 37&#x00b0;C under aerobic conditions for 24 hours. 
                    <italic toggle="yes">Staphylococcus aureus</italic> ATCC
                    <sup>&#x00ae;</sup> 25923
                    <sup>TM</sup> was cultured on blood agar with 5% (v/v) defibrinated bovine blood and incubated at 37&#x00b0;C under aerobic conditions for 24 hours.</p>
            </sec>
            <sec id="sec13">
                <title>Biofilm formation on heat polymerized acrylic resin disc</title>
                <p>Sterile HPA resin discs were preconditioned for 24 hours by immersion in artificial saliva. The density of the microorganism cultures must be adjusted using a densitometer following the 0.5 McFarland standard, namely 1.5 &#x00d7; 10
                    <sup>8</sup> CFU/mL for bacterial suspensions (
                    <italic toggle="yes">A. odontolyticus</italic>, 
                    <italic toggle="yes">S. gordonii</italic>, 
                    <italic toggle="yes">S. aureus</italic>) and 1.0 McFarland standard, namely 3.0 &#x00d7; 10
                    <sup>8</sup> CFU/mL for fungal suspensions (
                    <italic toggle="yes">C. albicans</italic> and 
                    <italic toggle="yes">C. glabrata</italic>). The preconditioned discs were then placed aseptically into 24-microplates, and 100 &#x03bc;L of standardized microorganisms were added to each surface of the disc. Biofilm preparations carried out were mono-species biofilms for each microorganism studied (
                    <italic toggle="yes">C. albicans</italic>, 
                    <italic toggle="yes">C. glabrata</italic>, 
                    <italic toggle="yes">A. odontolyticus</italic>, 
                    <italic toggle="yes">S. gordonii</italic>, 
                    <italic toggle="yes">S. aureus</italic>) and polymicrobial biofilms which were a combination of the five microorganisms studied. Sterile Dulbecco&#x2019;s Modified Eagle Medium (DMEM) (supplemented with 50 mmol L-1 L-glutamine per liter) was added to a final volume of 2 mL in each plate. Culture media discs in 24-wells microplates were shaken on an orbital shaker for 30 minutes to homogenize the media and culture solutions, then incubated at 37&#x00b0;C for 24 hours.</p>
            </sec>
            <sec id="sec14">
                <title>Determination of minimum biofilm inhibitory concentration (mbic
                    <sub>50</sub>) using microtiter plate biofilm formation test</title>
                <p>HPA resin discs which had been grown by mono-species and polymicrobial biofilms would be treated with immersion in avocado seed extract of 5%, 10%, 15%, 20%, as well as positive control (alkaline peroxide) and negative control (aquadest) for 8 hours at room temperature. The discs were then cleaned with distilled water, then put into a test tube together with 5 mL of Mueller Hinton broth and each shaken with a vortex mixer for 1 minute. A total of 100 &#x03bc;L of test solution was taken from the dilution and added into 96-wells microplates with a repetition of three times. Microplates were incubated at 37&#x00b0;C for 24 hours. After incubation, the microplates were cleaned with distilled water and patted vigorously on a lab mat to remove as much distilled water as possible. As much as 125 &#x03bc;L of 1% crystal violet solution was added to each microplate to colour the formed biofilm and left for 15 minutes. The crystal violet solution was discarded, then cleaned with distilled water and patted hard on a lab mat. The stained biofilm plates were allowed to dry until the remaining water in the microplates evaporated, then 150 &#x03bc;L of 95% ethanol was added to each plate and left for 10 minutes. The absorption value (OD) reading was carried out with a microplate reader at a wavelength of 595 nm and the results were calculated using the percentage inhibition value formula of which Control OD was defined as negative control absorption value and Sample OD was defined as test sample absorption value.
                    <sup>
                        <xref ref-type="bibr" rid="ref24">24</xref>
                    </sup>
                    <disp-formula id="e1">
                        <mml:math display="block">
                            <mml:mtext>Inhibition Value</mml:mtext>
                            <mml:mspace width="0.25em"/>
                            <mml:mrow>
                                <mml:mo stretchy="true">(</mml:mo>
                                <mml:mo>%</mml:mo>
                                <mml:mo stretchy="true">)</mml:mo>
                            </mml:mrow>
                            <mml:mo>=</mml:mo>
                            <mml:mrow>
                                <mml:mo stretchy="true">[</mml:mo>
                                <mml:mrow>
                                    <mml:mo stretchy="true">(</mml:mo>
                                    <mml:mtext>Control</mml:mtext>
                                    <mml:mspace width="0.25em"/>
                                    <mml:mi>OD</mml:mi>
                                    <mml:mo>&#x2212;</mml:mo>
                                    <mml:mtext>Sample</mml:mtext>
                                    <mml:mspace width="0.25em"/>
                                    <mml:mi>OD</mml:mi>
                                    <mml:mo stretchy="true">)</mml:mo>
                                </mml:mrow>
                                <mml:mo>&#x00f7;</mml:mo>
                                <mml:mtext>Control</mml:mtext>
                                <mml:mspace width="0.25em"/>
                                <mml:mi>OD</mml:mi>
                                <mml:mo stretchy="true">]</mml:mo>
                            </mml:mrow>
                            <mml:mo>&#x00d7;</mml:mo>
                            <mml:mn>100</mml:mn>
                        </mml:math>
                    </disp-formula>
                </p>
                <p>The treated sample which had an inhibition value of at least 50% of biofilm formation could be considered as the Minimum Biofilm Inhibitory Concentration (MBIC
                    <sub>50</sub>).
                    <sup>
                        <xref ref-type="bibr" rid="ref24">24</xref>
                    </sup>
                </p>
            </sec>
            <sec id="sec15">
                <title>Statistics analysis</title>
                <p>Univariate analysis was carried out to determine the average (mean) and standard deviation of the inhibition values for immersion of heat polymerized acrylic resin discs in each group. The conversion of absorption value to inhibition value in percentage is counted using the percentage inhibition value formula that had been coded in Excel 2021 software. The normality test was carried out using the Shapiro-Wilk test (p&gt;0.05) and the homogeneity test was carried out using the Levene test (p&gt;0.05). Data analysis was carried out using one-way ANOVA, which could be accompanied by Welch ANOVA on non-homogeneous data, to determine the effect of treatment in each group. Data were analyzed with IBS SPSS Statistics (RRID: SCR_016479) v.22.0 software and presented in tabulation and graphic form as mean and standard deviation. Significant differences were defined at p&lt;0.05.</p>
            </sec>
            <sec id="sec16">
                <title>Scanning electron microscopy (SEM)</title>
                <p>The SEM procedure was carried out at the USU Integrated Research Laboratory, Medan. HPA resin disc samples that had been preconditioned with artificial saliva were then grown with polymicrobial biofilm according to the previous biofilm formation procedure and given a soaking treatment in avocado seed extract. HPA resin disc samples that had biofilm grown on were cleaned with distilled water three times and fixed with 2.5% (w/v) glutaraldehyde in cacodylate buffer for about 6 hours. The wet sample was then coated with a thin layer of gold to make the sample conductive. Sample reading using SEM was carried out with a voltage of 5 kV.</p>
            </sec>
            <sec id="sec17">
                <title>Ethical approval</title>
                <p>The denture base subjects&#x2019; research was approved on 27
                    <sup>th</sup> February 2024 and performed according to the ethical standards by the Health Research Ethics Committee of the University of Sumatera Utara, Indonesia as stated in letter number 166/KEPK/USU/2024.</p>
            </sec>
        </sec>
        <sec id="sec18" sec-type="results">
            <title>Results</title>
            <p>In this study, there were 6 treatment groups consisting of samples of HPA resin discs soaked in avocado seed extract 5%, 10%, 15%, 20%, as well as a positive control (alkaline peroxide) and a negative control (aquadest). The HPA resin disc samples were grown with mono-species biofilms of 
                <italic toggle="yes">C. albicans</italic>, 
                <italic toggle="yes">C. glabrata</italic>, 
                <italic toggle="yes">A. odontolyticus</italic>, 
                <italic toggle="yes">S. gordonii</italic>, 
                <italic toggle="yes">S. aureus</italic> and polymicrobial biofilms so that the number of samples in this study was 144 samples (n=144).</p>
            <sec id="sec19">
                <title>Determination of avocado fruit plants</title>
                <p>The following are the results of avocado identification by the Medanense Herbarium, University of Sumatera Utara.</p>
                <p>Kingdom: Plantae</p>
                <p>Division: Spermatophyta</p>
                <p>Class: Dicotyledoneae</p>
                <p>Order: Laurales</p>
                <p>Family: Lauraceae</p>
                <p>Genus: Persea</p>
                <p>Species: 
                    <italic toggle="yes">Persea americana</italic> Mill.</p>
                <p>Local Name: Avocado Seed</p>
            </sec>
            <sec id="sec20">
                <title>Phytochemical test results of avocado seed ethanol extract</title>
                <p>The phytochemical test on the ethanol extract of avocado seeds was done using specific reagents to determine the presence of secondary metabolite compounds which were alkaloids, flavonoids, glycosides, saponin, tannin, triterpenoids/steroids (
                    <xref ref-type="table" rid="T1">Table 1</xref>). The test showed positive results of all the tested secondary metabolite compounds and none negative results.</p>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>Table 1. </label>
                    <caption>
                        <title>Phytochemical test of avocado seed ethanol extract.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">No.</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Secondary metabolites</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Reagents</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Results</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="3" valign="top">1</td>
                                <td align="left" colspan="1" rowspan="3" valign="top">Alkaloids</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Dragendorff</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Bouchardat</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Mayer</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Flavonoids</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Mg Powder + Amyl Alcohol + HCl
                                    <sub>p</sub>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Glycosides</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Molisch + H
                                    <sub>2</sub>SO
                                    <sub>4</sub>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Saponin</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Hot water/shaken</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Tannin</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">FeCl
                                    <sub>3</sub>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Triterpenoids/Steroids</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Lieberman-Burchard</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">+</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
            </sec>
            <sec id="sec21">
                <title>Quantitative analysis results for phytochemical compounds of avocado seed ethanol extract</title>
                <p>The secondary metabolite compounds existing in the avocado seed ethanol extract could be further assessed by doing a quantitative analysis to determine the amount of the secondary metabolites in the sample extract which were flavonoids, phenol, saponin, and alkaloids (
                    <xref ref-type="table" rid="T2">
                        <bold>T</bold>able 2</xref>). The analysis showed a total amount of phenol (66,8157 mgGAE/g extract), total amount of flavonoids (4,0888 mgQE/g extract), total percentage of saponin (1,59%), and total percentage of alkaloids (1,22%).</p>
                <table-wrap id="T2" orientation="portrait" position="float">
                    <label>Table 2. </label>
                    <caption>
                        <title>Quantitative analysis for phytochemical compounds of avocado seed ethanol extract.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">No.</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Analysis</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Total</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Unit</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Total Flavonoids</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">4,0888</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">mgQE/g extract</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Total Phenol</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">66,8157</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">mgGAE/g extract</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Total Saponin</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1,59</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">%</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Total Alkaloids</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1,22</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">%</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
            </sec>
            <sec id="sec22">
                <title>The MBIC
                    <sub>50</sub> determination of avocado seed extract and its effect on the mono-species biofilms of 
                    <italic toggle="yes">C. albicans</italic>, 
                    <italic toggle="yes">C. glabrata</italic>, 
                    <italic toggle="yes">A. odontolyticus</italic>, 
                    <italic toggle="yes">S. gordonii</italic>, 
                    <italic toggle="yes">S. aureus</italic>
                </title>
                <p>Each sample in each group was repeated three times to obtain three absorption values (OD) which then using univariate analysis, the mean and standard deviation were obtained. The obtained absorption value was calculated using the percentage inhibition value formula with an inhibition value of 50% as a parameter for determining MBIC
                    <sub>50</sub> (
                    <xref ref-type="fig" rid="f2">Figure 2</xref>). Based on calculations, MBIC
                    <sub>50</sub> of avocado seed extract in mono-species 
                    <italic toggle="yes">C. albicans</italic> biofilm was 5% avocado seed extract. MBIC
                    <sub>50</sub> avocado seed extract in mono-species 
                    <italic toggle="yes">C. glabrata</italic> biofilm was 5% avocado seed extract. MBIC
                    <sub>50</sub> avocado seed extract in mono-species 
                    <italic toggle="yes">A. odontolyticus</italic> biofilm was 15% avocado seed extract. MBIC
                    <sub>50</sub> avocado seed extract in mono-species 
                    <italic toggle="yes">S. gordonii</italic> biofilm was 15% avocado seed extract. MBIC
                    <sub>50</sub> avocado seed extract in mono-species 
                    <italic toggle="yes">S. aureus</italic> biofilms was 10% avocado seed extract.</p>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>Figure 2. </label>
                    <caption>
                        <title>Inhibition value of the mono-species biofilm growth soaked in avocado seed extract and alkaline peroxide.</title>
                    </caption>
                    <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/167602/95192ae2-dd7d-4582-9c53-399876960abf_figure2.gif"/>
                </fig>
                <p>The sample was tested for normality and a value of p&gt;0.05 was obtained, hence the data were normally distributed. Then, a homogeneity test was carried out by which the mono-species 
                    <italic toggle="yes">C. albicans</italic> biofilm sample obtained a value of p&lt;0.001 (p&lt;0.05), the mono-species 
                    <italic toggle="yes">A. odontolyticus</italic> biofilm sample obtained a value of p=0.002 (p&lt;0.05), and the mono-species 
                    <italic toggle="yes">S. gordonii</italic> biofilm sample obtained a value of p&#x2264;0.001 (p&lt;0.05) so the data were not homogeneous, while the mono-species 
                    <italic toggle="yes">C. glabrata</italic> biofilm sample obtained a value of p=0.054 (p&gt;0.05) and the mono-species 
                    <italic toggle="yes">S. aureus</italic> biofilm sample obtained a value of p=0.116 (p&gt;0.05) so the data were homogeneous. Data which was normally distributed and homogeneous was tested using one-way ANOVA and data which was normally distributed but not homogeneous was analysed using Welch ANOVA. This study found that mono-species biofilm samples of 
                    <italic toggle="yes">C. albicans, C. glabrata, A. odontolyticus, S. gordonii, S. aureus</italic> obtained a value of p&#x2264;0.001 (p&lt;0.05) which indicated a significant effect of 5%, 10%, 15%, 20% avocado seed extract in inhibiting mono-species biofilms of 
                    <italic toggle="yes">C. albicans, C. glabrata, A. odontolyticus, S. gordonii, S. aureus</italic> (
                    <xref ref-type="table" rid="T3">Table 3</xref>).</p>
                <table-wrap id="T3" orientation="portrait" position="float">
                    <label>Table 3. </label>
                    <caption>
                        <title>One-way ANOVA and Welch ANOVA of the treatment groups against mono-species biofilms.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Treatment groups</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Absorption values</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">p</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="3" rowspan="1" valign="top">
                                    <bold>Mono-species 
                                        <italic toggle="yes">C. albicans</italic> Biofilm</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 5%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.2949 &#x00b1; 0.0397</td>
                                <td align="left" colspan="1" rowspan="6" valign="middle">&lt;0.001
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn1">*</xref>
                                    </sup>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 10%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.3782 &#x00b1; 0.1057</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 15%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.2738 &#x00b1; 0.0812</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.4527 &#x00b1; 0.0968</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Positive control (+) Alkaline Peroxide</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.4140 &#x00b1; 0.3489</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Negative control (-) Aquadest</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.2332 &#x00b1; 0.1059</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="3" rowspan="1" valign="top">
                                    <bold>Mono-species 
                                        <italic toggle="yes">C. glabrata</italic> Biofilm</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 5%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.0400 &#x00b1; 0.2107</td>
                                <td align="left" colspan="1" rowspan="6" valign="middle">&lt;0.001
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn1">*</xref>
                                    </sup>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 10%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.8743 &#x00b1; 0.1651</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 15%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.9057 &#x00b1; 0.2735</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.8576 &#x00b1; 0.3452</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Positive control (+) Alkaline Peroxide</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.7160 &#x00b1; 0.3368</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Negative control (-) Aquadest</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">2.0627 &#x00b1; 0.2138</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="3" rowspan="1" valign="top">
                                    <bold>Mono-species 
                                        <italic toggle="yes">A. odontolyticus</italic> Biofilm</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 5%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.4803 &#x00b1; 0.1093</td>
                                <td align="left" colspan="1" rowspan="6" valign="middle">&lt;0.001
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn1">*</xref>
                                    </sup>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 10%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.2479 &#x00b1; 0.1185</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 15%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.0302 &#x00b1; 0.1534</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.9946 &#x00b1; 0.3225</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Positive control (+) Alkaline Peroxide</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.9595 &#x00b1; 0.2909</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Negative control (-) Aquadest</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">2.0972 &#x00b1; 0.1524</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="3" rowspan="1" valign="top">
                                    <bold>Mono-species 
                                        <italic toggle="yes">S. gordonii</italic> Biofilm</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 5%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.0829 &#x00b1; 0.0887</td>
                                <td align="left" colspan="1" rowspan="6" valign="middle">&lt;0.001
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn1">*</xref>
                                    </sup>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 10%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.0048 &#x00b1; 0.0635</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 15%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.8602 &#x00b1; 0.0834</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.8316 &#x00b1; 0.0751</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Positive control (+) Alkaline Peroxide</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.5322 &#x00b1; 0.3910</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Negative control (-) Aquadest</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.7614 &#x00b1; 0.0895</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="3" rowspan="1" valign="top">
                                    <bold>Mono-species 
                                        <italic toggle="yes">S. aureus</italic> Biofilm</bold>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 5%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.9012 &#x00b1; 0.0666</td>
                                <td align="left" colspan="1" rowspan="6" valign="middle">&lt;0.001
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn1">*</xref>
                                    </sup>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 10%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.7968 &#x00b1; 0.0832</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 15%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.7779 &#x00b1; 0.0832</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.7225 &#x00b1; 0.0820</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Positive control (+) Alkaline Peroxide</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.6362 &#x00b1; 0.1407</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Negative control (-) Aquadest</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.6475 &#x00b1; 0.0884</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn1">
                                <label>*</label>
                                <p>Significant, absorption values are in mean and standard deviation.</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
            <sec id="sec23">
                <title>The MBIC
                    <sub>50</sub> determination of avocado seed extract and its effect on polymicrobial biofilm</title>
                <p>In this study, three absorption values (OD) of polymicrobial biofilm samples were obtained from which the mean and standard deviation were obtained using univariate analysis. Using the percentage inhibition value formula, the inhibition values were obtained for each group of avocado seed extract of 5%, 10%, 15%, 20%, and the positive control (alkaline peroxide) where the 50% inhibition value was set as a parameter for determining MBIC
                    <sub>50</sub> (
                    <xref ref-type="fig" rid="f3">Figure 3</xref>). Hence, the MBIC
                    <sub>50</sub> avocado seed extract in polymicrobial biofilm was 20% avocado seed extract.</p>
                <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                    <label>Figure 3. </label>
                    <caption>
                        <title>Inhibition value of the polymicrobial biofilm growth soaked in avocado seed extract and alkaline peroxide.</title>
                    </caption>
                    <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/167602/95192ae2-dd7d-4582-9c53-399876960abf_figure3.gif"/>
                </fig>
                <p>The sample was tested for normality and a value of p &gt;0.05 was obtained, hence the data was normally distributed. Then, a homogeneity test was carried out by which the polymicrobial biofilm samples obtained a value of p=0.006 (p&lt;0.05) so that the data was not homogeneous. Data that were normally distributed but not homogeneous were analysed using the Welch ANOVA. This study found that the polymicrobial samples obtained a value of p&#x2264;0.001 (p&lt;0.05) which indicated a significant effect of soaking in 5%, 10%, 15%, 20% avocado seed extract in inhibiting polymicrobial biofilm (
                    <xref ref-type="table" rid="T4">Table 4</xref>).</p>
                <table-wrap id="T4" orientation="portrait" position="float">
                    <label>Table 4. </label>
                    <caption>
                        <title>Welch ANOVA of the treatment groups against polymicrobial biofilm.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Kelompok</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Absorption Values of Polymicrobial Biofilm</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">p</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 5%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.3573 &#x00b1; 0.2300</td>
                                <td align="left" colspan="1" rowspan="6" valign="middle">&lt;0.001
                                    <sup>
                                        <xref ref-type="table-fn" rid="tfn2">*</xref>
                                    </sup>
                                </td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 10%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.2699 &#x00b1; 0.2442</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 15%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.0897 &#x00b1; 0.1137</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Avocado Seed Extract of 20%</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.9810 &#x00b1; 0.1658</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Positive control (+) Alkaline Peroxide</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">0.7359 &#x00b1; 0.5637</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Negative control (-) Aquadest</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">1.9942 &#x00b1; 0.6417</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn2">
                                <label>*</label>
                                <p>Significant, absorption values are in mean and standard deviation.</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
            </sec>
            <sec id="sec24">
                <title>Scanning electron microscopy (SEM) results of polymicrobial biofilm on hpa resin discs soaked in avocado seed extract</title>
                <p>Based on the Integrated Laboratory Test Results Report of the University of Sumatera Utara with the number 113/UN5.4.6.K/KPM/2024, the results of SEM tests carried out on HPA resin discs with polymicrobial biofilm which had been soaked with avocado seed extract could be detected and clearly seen in 
                    <xref ref-type="fig" rid="f4">Figure 4</xref> below. SEM results showed that there were microorganisms growing on the HPA resin disc. The soaking in 5% avocado seed extract showed a denser formation of biofilm compared to soaking in 15% avocado seed extract.</p>
                <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                    <label>Figure 4. </label>
                    <caption>
                        <title>SEM results of 5% avocado seed extract (left) and 15% avocado seed extract (right).</title>
                    </caption>
                    <graphic id="gr4" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/167602/95192ae2-dd7d-4582-9c53-399876960abf_figure4.gif"/>
                </fig>
            </sec>
        </sec>
        <sec id="sec25" sec-type="discussion">
            <title>Discussion</title>
            <p>Denture plaque is not the same as dental plaque, although the microbial composition of denture plaque is influenced to a certain extent by dental plaque because the microbiota on the denture surface and the tooth surface originates from the same oral cavity. However, Fujinami et al. (2021) and O&#x2019;Donnell et al. (2015) found lower diversity in denture plaque compared to dental plaque which may be caused by differences in the surface on which it grows.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref25">25</xref>
                </sup> Low diversity in denture plaque, and the denture environment in the underlying tissue which is low in oxygen levels and saliva flow, as well as denture surface characteristics in the form of porosity and non-specific factors such as hydrophobicity, van der Waals forces, Brownian motion forces, and electrostatic interactions support the adhesion and growth of 
                <italic toggle="yes">Candida</italic> spp. to colonize denture surfaces and form co-aggregates with bacteria to form complex microbial communities.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref54">26</xref>
                </sup>
                <sup>,</sup>
                <sup>
                    <xref ref-type="bibr" rid="ref56">27</xref>
                </sup>
            </p>
            <sec id="sec26">
                <title>The MBIC
                    <sub>50</sub> of avocado seed extract and its effect on the mono-species biofilms of 
                    <italic toggle="yes">C. albicans</italic>, 
                    <italic toggle="yes">C. glabrata</italic>, 
                    <italic toggle="yes">A. odontolyticus</italic>, 
                    <italic toggle="yes">S. gordonii</italic>, 
                    <italic toggle="yes">S. aureus</italic>
                </title>
                <p>
                    <italic toggle="yes">Candida albicans</italic> has the pathogenic ability in the form of morphogenesis, which is the ability to transition 
                    <italic toggle="yes">C. albicans</italic> from a unicellular yeast form to a pathogenic filament form (pseudohyphae or hyphae) reversibly.
                    <sup>
                        <xref ref-type="bibr" rid="ref26">28</xref>
                    </sup>
                    <sup>,</sup>
                    <sup>
                        <xref ref-type="bibr" rid="ref27">29</xref>
                    </sup> 
                    <italic toggle="yes">C. albicans</italic> yeast cells will adhere to the denture surface via A1s1-8p adhesin, then proliferate to form microcolonies which become the basal layer of the biofilm and produce extracellular matrix (ECM). As the biofilm matures, there is an increase in biomass with the presence of yeast cells, hyphae and pseudohyphae encapsulated in the extracellular matrix. These hyphae are fundamental and important components in supporting the structural integrity of the biofilm and provide a means of attachment for additional yeast cells, pseudohyphae, other hyphae, and bacteria due to their ability to express specific adhesins such as Hwp1p and Hyr1p.
                    <sup>
                        <xref ref-type="bibr" rid="ref15">15</xref>
                    </sup> These hyphae are also capable of damaging epithelial cells and destabilizing membranes through induced calcium ion influx and release of lactate dehydrogenase.
                    <sup>
                        <xref ref-type="bibr" rid="ref9">9</xref>
                    </sup> In this study, the MBIC
                    <sub>50</sub> of avocado seed extract in mono-species 
                    <italic toggle="yes">C. albicans</italic> biofilm was 5% avocado seed extract with an inhibition value of 76.09 &#x00b1; 3.21%. This is in accordance with previous research by Wulandari et al. (2023) who tested the effect of avocado seed extract on 
                    <italic toggle="yes">C. albicans</italic> biofilms. Using the inhibition percentage formula, the lowest concentration of avocado seed extract tested, which is a concentration of 3.13%, was able to inhibit 
                    <italic toggle="yes">C. albicans</italic> biofilms incubated for 24 hours by 75.37%.
                    <sup>
                        <xref ref-type="bibr" rid="ref28">30</xref>
                    </sup>
                </p>
                <p>
                    <italic toggle="yes">Candida glabrata</italic> is the second most frequently isolated cause of candidiasis and is often found together with 
                    <italic toggle="yes">C. albicans</italic> in the form of co-isolation in which 
                    <italic toggle="yes">C. glabrata</italic> budding yeast is found attached to C. albicans hyphae.
                    <sup>
                        <xref ref-type="bibr" rid="ref29">31</xref>
                    </sup> There was still little to none research done on the effect of avocado seed extract on 
                    <italic toggle="yes">C. glabrata.</italic> This study found that the MBIC
                    <sub>50</sub> of avocado seed extract in mono-species 
                    <italic toggle="yes">C. glabrata</italic> biofilm was 5% avocado seed extract with an inhibition value of 52.41 &#x00b1; 9.64%. When compared with the 
                    <italic toggle="yes">C. albicans</italic> inhibition value, there was a decrease in the biofilm inhibition activity of avocado seed extract against 
                    <italic toggle="yes">C. glabrata.</italic> This is due to the higher antifungal resistance in 
                    <italic toggle="yes">C. glabrata</italic> than in 
                    <italic toggle="yes">C. albicans</italic>, and the rapid ability of 
                    <italic toggle="yes">C. glabrata</italic> to develop resistance to currently used antifungal agents.
                    <sup>
                        <xref ref-type="bibr" rid="ref30">32</xref>
                    </sup> Farahyar et al. (2016) found that 
                    <italic toggle="yes">C. glabrata</italic> had Candida drug-resistant (CgCDR) genes CgCDR1 and CgCDR2, and Fatty Acid Activator 1 (FAA1) which was positively regulated twice as much in resistant strains.
                    <sup>
                        <xref ref-type="bibr" rid="ref31">33</xref>
                    </sup> Yu et al. (2018) found that another factor that played an important role in the antifungal tolerance and cell wall integrity of 
                    <italic toggle="yes">C. glabrata</italic> is ADA2 which was mediated by the ERG6 gene.
                    <sup>
                        <xref ref-type="bibr" rid="ref32">34</xref>
                    </sup>
                </p>
                <p>Bacteria are thought to play an important role in the formation of denture plaque considering that denture plaque can contain 10
                    <sup>11</sup> microbes per milligram.
                    <sup>
                        <xref ref-type="bibr" rid="ref8">8</xref>
                    </sup> 
                    <italic toggle="yes">Actinomyces</italic> is a genus commonly found in denture plaque with a large proportion which can be caused by the ability of 
                    <italic toggle="yes">C. albicans</italic> biofilms to provide a positive anaerobic environment to some anaerobic bacteria so that 
                    <italic toggle="yes">Actinomyces</italic> which is an anaerobic bacteria can easily grow in oxygen-rich areas.
                    <sup>
                        <xref ref-type="bibr" rid="ref10">10</xref>
                    </sup>
                    <sup>,</sup>
                    <sup>
                        <xref ref-type="bibr" rid="ref27">29</xref>
                    </sup> However, the clinical significance of 
                    <italic toggle="yes">Actinomyces</italic> spp. still needs to be proven and the available data regarding the antimicrobial susceptibility of 
                    <italic toggle="yes">Actinomyces</italic> is still limited with the susceptibility method which has not been standardized. In this study, the MBIC
                    <sub>50</sub> of avocado seed extract against the mono-species 
                    <italic toggle="yes">Actinomyces odontolyticus</italic> biofilm was high, namely 15% avocado seed extract with an inhibition value of 50.88 &#x00b1; 7.31%. This can be explained by several studies which had found the existence of antimicrobial agent resistance or antibiotic resistance in 
                    <italic toggle="yes">A. odontolyticus.</italic> Wolff et al. (2022) found an 
                    <italic toggle="yes">A. odontolyticus</italic> isolate that showed multi-drug resistance (MDR) to benzylpenicillin, meropenem, moxifloxacin, and daptomycin.
                    <sup>
                        <xref ref-type="bibr" rid="ref33">35</xref>
                    </sup> Steininger et al. (2016) tested the susceptibility of 
                    <italic toggle="yes">Actinomyces</italic> spp. taken from 387 patients over a 7-year period and found that 
                    <italic toggle="yes">Actinomyces</italic> spp. was susceptible to &#x03b2;-lactam antimicrobial agents with and without &#x03b2;-lactamase inhibitors and there was an 
                    <italic toggle="yes">A. odontolyticus</italic> isolate that was resistant to tetracycline.
                    <sup>
                        <xref ref-type="bibr" rid="ref34">36</xref>
                    </sup>
                </p>
                <p>Shi et al. (2016) found that 
                    <italic toggle="yes">S. gordonii</italic> colonized denture teeth in healthy denture users at a significantly higher rate.
                    <sup>
                        <xref ref-type="bibr" rid="ref11">11</xref>
                    </sup> In this study, the MBIC
                    <sub>50</sub> of avocado seed extract in mono-species 
                    <italic toggle="yes">S. gordonii</italic> biofilm was 15% avocado seed extract with an inhibition value of 51.16 &#x00b1; 4.74%. There was still no research done on the effect of avocado seed extract on 
                    <italic toggle="yes">S. gordonii</italic>, but most researches on 
                    <italic toggle="yes">S. mutans</italic> had been carried out, where these researches focused on treating caries and dental plaque rather than denture plaque. Calosa et al. (2023) found that the minimum inhibitory level of avocado seed extract against S. mutans as seen from the sample absorbance was 12.5%.
                    <sup>
                        <xref ref-type="bibr" rid="ref35">37</xref>
                    </sup> 
                    <italic toggle="yes">S. gordonii</italic> usually competes with 
                    <italic toggle="yes">S. mutans</italic> where 
                    <italic toggle="yes">S. gordonii</italic> metabolically produces hydrogen peroxide which is able to inhibit the growth of 
                    <italic toggle="yes">S. mutans</italic>, and produces alkaline ammonia which is able to mitigate acidity on the tooth surface. The presence of 
                    <italic toggle="yes">S. mutans</italic> in plaque is strongly and positively associated with caries while 
                    <italic toggle="yes">S. gordonii</italic> is negatively associated with caries.
                    <sup>
                        <xref ref-type="bibr" rid="ref36">38</xref>
                    </sup> Considering the antagonistic relationship between 
                    <italic toggle="yes">S. mutans</italic> and 
                    <italic toggle="yes">S. gordonii</italic>, the presence of 
                    <italic toggle="yes">S. gordonii</italic> in denture plaque minimizes the presence of 
                    <italic toggle="yes">S. mutans.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref35">37</xref>
                    </sup> Further research into the effects of avocado seeds on 
                    <italic toggle="yes">S. gordonii</italic> needs to be carried out.</p>
                <p>
                    <italic toggle="yes">S. aureus</italic> is often associated with higher amount in the elderly, seriously ill patients, individuals with low salivary secretion, and denture wearers.
                    <sup>
                        <xref ref-type="bibr" rid="ref37">39</xref>
                    </sup> 
                    <italic toggle="yes">S. aureus</italic> is also commonly found in patients with oral infections associated with 
                    <italic toggle="yes">Candida albicans</italic>, such as denture stomatitis and angular cheilitis, due to the nature of 
                    <italic toggle="yes">S. aureus</italic> which tends to attach more easily to the hyphal phase of 
                    <italic toggle="yes">C albicans</italic> compared to abiotic surfaces.
                    <sup>
                        <xref ref-type="bibr" rid="ref38">40</xref>
                    </sup> In this study, the MBIC
                    <sub>50</sub> of avocado seed extract in mono-species 
                    <italic toggle="yes">S. aureus</italic> biofilm was 10% avocado seed extract with a value of inhibition was 51.63 &#x00b1; 5.05%. Research on the effect of avocado seed extract on 
                    <italic toggle="yes">S. aureus</italic> that has been carried out has found the Minimum Inhibitory Concentration (MIC) of avocado seed extract, but not the MBIC. Santosa et al. (2019) using the zone of inhibition test concluded that avocado seed extract was effective in inhibiting multi-resistant 
                    <italic toggle="yes">S. aureus</italic> at a concentration of 6.25%.
                    <sup>
                        <xref ref-type="bibr" rid="ref39">41</xref>
                    </sup>
                </p>
                <p>This study found a significant effect of soaking in avocado seed extract (
                    <italic toggle="yes">Persea americana</italic> Mill.) concentrations of 5%, 10%, 15%, 20%, as well as the positive control of alkaline peroxide in inhibiting the growth of denture plaque microorganisms on HPA resin discs in the form of 
                    <italic toggle="yes">C. albicans</italic>, 
                    <italic toggle="yes">C. glabrata, A. odontolyticus, S. gordonii</italic>, and 
                    <italic toggle="yes">S. aureus</italic> mono-species biofilms, each with a value of p&#x2264;0.001 (p&lt;0.05). If the inhibition value of avocado seed extract was compared with the inhibition value of the positive control alkaline peroxide, only the MBIC
                    <sub>50</sub> inhibition value of avocado seed extract on mono-species 
                    <italic toggle="yes">C. albicans</italic> biofilm (76.09 &#x00b1; 3.21%) was found to be higher than the inhibition value of the positive control (66, 43 &#x00b1; 28.29%). In other mono-species biofilms, such as C. glabrata, A. odontolyticus, S. gordonii, S. aureus, the inhibition value of avocado seed extract was lower than the inhibition value of the positive control. Morelli et al. (2023) stated that effervescent tablets showed good antimicrobial activity against 
                    <italic toggle="yes">C. glabrata, S. mutans</italic>, and 
                    <italic toggle="yes">S. aureus</italic> on a cobalt-chromium surface. However, none of these peroxide-based solutions showed a reduction in 
                    <italic toggle="yes">C. albicans</italic> biofilms or substantially eliminated aggregated biofilms.
                    <sup>
                        <xref ref-type="bibr" rid="ref40">42</xref>
                    </sup>
                </p>
            </sec>
            <sec id="sec27">
                <title>The MBIC
                    <sub>50</sub> of avocado seed extract and its effect on polymicrobial biofilm</title>
                <p>From the research results, the MBIC
                    <sub>50</sub> of avocado seed extract against polymicrobial biofilm in this study was 20% avocado seed extract with an inhibition value of 50.81 &#x00b1; 8.32%. When compared with MBIC
                    <sub>50</sub> in mono-species biofilms, it was found that polymicrobial biofilm required a higher concentration of avocado seed extract. This is in accordance with research results which state that polymicrobial biofilms have higher resistance to antimicrobial agents compared to mono-species biofilms. O&#x2019;Brien et al. (2022) who tested three clinically relevant antimicrobial agents namely colistin, fusidic acid, and fluconazole against polymicrobial populations containing 
                    <italic toggle="yes">P. aeruginosa, S. aureus</italic>, and 
                    <italic toggle="yes">C. albicans</italic> found a higher antimicrobial agent resistance in polymicrobial biofilm compared to mono-species biofilms. These researchers found that there was a decrease in antimicrobial activity against target microorganisms in polymicrobial cultures compared to mono-species cultures.
                    <sup>
                        <xref ref-type="bibr" rid="ref41">43</xref>
                    </sup> However, Kart et al. (2014) stated that polymicrobial biofilms did not always have higher resistance compared to mono-species biofilms as its susceptibility to antimicrobial agents depends on the nature of the microbial species present and the disinfectant used.
                    <sup>
                        <xref ref-type="bibr" rid="ref42">44</xref>
                    </sup>
                </p>
                <p>In polymicrobial biofilms, the interactions between microbes are very complex, some of which include cooperative and antagonistic interactions. Synergism between species in polymicrobial biofilms can produce effects on growth enhancement, antimicrobial resistance, virulence, and greater exopolysaccharide production compared to individual species alone.
                    <sup>
                        <xref ref-type="bibr" rid="ref43">45</xref>
                    </sup> 
                    <italic toggle="yes">C. albicans</italic> and 
                    <italic toggle="yes">C. glabrata</italic> are often found together in the form of co-isolates that cause increased pathogenicity of both species.
                    <sup>
                        <xref ref-type="bibr" rid="ref44">46</xref>
                    </sup> This is due to the ability of 
                    <italic toggle="yes">C. albicans</italic> to damage host tissue which can be exploited by 
                    <italic toggle="yes">C. glabrata</italic> to reach deeper tissues. 
                    <italic toggle="yes">C. glabrata</italic> itself has very high antifungal resistance capabilities, and is able to modify the maturation of macrophage phagosomes so that they can hide inside macrophages from the host immune system so 
                    <italic toggle="yes">C. glabrata</italic> can produce infections that are much more severe and require quite complicated treatment.
                    <sup>
                        <xref ref-type="bibr" rid="ref45">47</xref>
                    </sup> Other microorganisms that were found to have a very synergistic interaction were 
                    <italic toggle="yes">S. gordonii</italic> and 
                    <italic toggle="yes">C. albicans.</italic> 
                    <italic toggle="yes">S. gordonii</italic> was found to be capable of promoting filamentation and increasing fungal biofilm formation. Higher biomass was also found in polymicrobial biofilms formed by 
                    <italic toggle="yes">C. albicans</italic> and 
                    <italic toggle="yes">S. gordonii.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref46">48</xref>
                    </sup> Diaz et al. (2014) showed an increase in the ability of oral streptococci to form biofilms on abiotic surfaces in the presence of 
                    <italic toggle="yes">C. albicans.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref47">49</xref>
                    </sup> This is caused by C. albicans adhesins which facilitate the interaction of bacterial species, such as Als1p, Als2p, Als3p, Hwp1p.
                    <sup>
                        <xref ref-type="bibr" rid="ref26">28</xref>
                    </sup> On the other hand, these bacteria is able to influence the local environment of C. albicans by altering nutrient supply and carbon dioxide levels thereby favouring C. albicans&#x2019; hyphal transition and virulence.
                    <sup>
                        <xref ref-type="bibr" rid="ref47">49</xref>
                    </sup> The interaction of the two species causes increased resistance to antimicrobial agents.
                    <sup>
                        <xref ref-type="bibr" rid="ref46">48</xref>
                    </sup> The relationship between 
                    <italic toggle="yes">S. aureus</italic> and 
                    <italic toggle="yes">C. albicans</italic> has also been studied extensively where 
                    <italic toggle="yes">C. albicans</italic> can increase 
                    <italic toggle="yes">S. aureus</italic> resistance to vancomycin by 100-fold due to the production of the cell wall component &#x03b2;-1,3-glucan. These compounds were identified as matrix constituents that provide bacteria with increased drug tolerance. In addition, the production of farnesol and prostaglandin E2 by C. albicans can increase S. aureus biofilm formation.
                    <sup>
                        <xref ref-type="bibr" rid="ref48">50</xref>
                    </sup>
                </p>
                <p>Antagonistic interactions are a type of competitive interaction where one species will inhibit the growth of another species by producing a variety of secondary metabolites that can inhibit or kill competing species so that the biofilm architecture can be disrupted.
                    <sup>
                        <xref ref-type="bibr" rid="ref43">45</xref>
                    </sup> Guo et al. (2015) found an inhibitory effect of 
                    <italic toggle="yes">A. odontolyticus</italic> on proliferation, adhesion, metabolic enzyme activity, hypha formation, and biofilm development of 
                    <italic toggle="yes">C. albicans.</italic> Actinomyces was found to produce many metabolites with antifungal activity, including lincomycin and geldanamycin.
                    <sup>
                        <xref ref-type="bibr" rid="ref49">51</xref>
                    </sup> However, another study by Morse et al. (2019) showed opposite results and found that polymicrobial biofilms of 
                    <italic toggle="yes">S. sanguinis, S. gordonii, A. odontolyticus,</italic> and 
                    <italic toggle="yes">A. viscosus</italic> were able to increase the number of C. albicans hyphae.
                    <sup>
                        <xref ref-type="bibr" rid="ref50">52</xref>
                    </sup>
                </p>
                <p>In this study, there was a significant effect of soaking in avocado seed extract (
                    <italic toggle="yes">Persea americana</italic> Mill.) concentrations of 5%, 10%, 15%, 20%, as well as the positive control of alkaline peroxide in inhibiting the growth of polymicrobial biofilm on HPA resin discs with a value of p&#x2264;0.001 (p&lt;0.05). The results of this analysis were also supported by SEM results which showed a much sparse biofilm on HPA resin discs soaked in 15% avocado seed compared to those soaked in 5% avocado seed extract. This showed that avocado seed extract had the ability to damage the mucus layer of polymicrobial biofilms. Polymicrobial biofilms are highly structured associations of microorganisms encased in an extracellular matrix (ECM) which attached to biotic or abiotic surfaces. One of the advantages of biofilms to the microorganisms within them is the presence of collective recalcitrant which is defined as the ability of pathogenic biofilms to survive in the presence of high concentrations of antibiotics. Cells in biofilms were found to be 10-1000 times more resistant to various antimicrobial agents than their planktonic forms.
                    <sup>
                        <xref ref-type="bibr" rid="ref51">53</xref>
                    </sup> Polymicrobial biofilms were found to have tolerance to antimicrobial agents and increased virulence due to an extracellular matrix (ECM) containing abundant extracellular polymeric substances (EPS) to protect all microbial cells from various dangers.
                    <sup>
                        <xref ref-type="bibr" rid="ref52">54</xref>
                    </sup> The presence of extracellular matrix (ECM) can influence pH, oxygen concentration, and nutrient availability in the deepest layers of the biofilm. In addition, ECM can limit the penetration of antimicrobial agents and cause the accumulation of antibiotic-degrading enzymes.
                    <sup>
                        <xref ref-type="bibr" rid="ref42">44</xref>
                    </sup> Therefore, increasing the permeability of polymicrobial biofilms is one of the targets of antimicrobial agents to inhibit the microorganisms within them.</p>
                <p>In the phytochemical tests that have been carried out, flavonoid, tannin, alkaloid, saponin, triterpenoid and polyphenol class compounds were found present in avocado seed extract. Followed by quantitative tests of phytochemical compounds, it was found that the total flavonoid content in avocado seed extract was 4.0888 mgQE/g, the total phenol content was 66.8157 mgGAE/g, the total alkaloid content was 1.22%, and the total saponin content was 1. 59%. Vinha et al. (2013) found higher levels of flavonoids and total phenolics in avocado seeds compared to avocado flesh and skin.
                    <sup>
                        <xref ref-type="bibr" rid="ref53">55</xref>
                    </sup> The extraction technique used in the research was the maceration technique, which is a method that is very suitable for secondary metabolite compounds that are sensitive to heat, such as polyphenolic compounds, especially flavonoids, causing the discovery of high levels of flavonoids and polyphenols.
                    <sup>
                        <xref ref-type="bibr" rid="ref54">26</xref>
                    </sup> Flavonoids and tannins are a family of polyphenolic components that are widely distributed in Kingdom Plantae.
                    <sup>
                        <xref ref-type="bibr" rid="ref55">56</xref>
                    </sup> Flavonoids were found to have an antibiofilm effect by penetrating the biofilm layer and inhibiting bacterial growth and attachment. surface. The presence of hydrophilic parts of the chemical structure of flavonoids, including glycoside and hydroxy groups, could increase penetration of the biofilm structure and increase antibiofilm activity.
                    <sup>
                        <xref ref-type="bibr" rid="ref56">27</xref>
                    </sup> Matilla-Cuenca et al. (2020) found that the antibiofilm activity of flavonoids which could inhibit 
                    <italic toggle="yes">S. aureus</italic> biofilm formation was specifically mediated by Bap.
                    <sup>
                        <xref ref-type="bibr" rid="ref57">57</xref>
                    </sup> Tannins were also found to influence the gene expression of virulent factors such as biofilm, enzymes, adhesins, motility and toxins, and act as quorum sensing inhibitors.
                    <sup>
                        <xref ref-type="bibr" rid="ref58">58</xref>
                    </sup> Villanueva et al. (2023) found that all unmodified natural tannins had broad spectrum activity due to their ability to exhibit very significant anti-biofilm activity against Gram-positive and Gram-negative bacteria at least at a concentration of 150 mg/L.
                    <sup>
                        <xref ref-type="bibr" rid="ref59">59</xref>
                    </sup>
                </p>
                <p>Alkaloids have been found to damage bacterial cell membranes, inhibit efflux pumps, inhibit ATP synthesis which affects the metabolic processes of microorganisms, damage DNA/RNA molecules or inhibit DNA thereby preventing the expression of virulent genes, and inhibit FtsZ protein synthesis by participating in the diaphragm formation and forming a ring structure in division sites to control the division process and growth of bacterial cells.
                    <sup>
                        <xref ref-type="bibr" rid="ref60">60</xref>
                    </sup> Saponin can reduce the surface tension of bacterial cell walls and damage cell permeability so that saponin can diffuse into the cell and bind to the cytoplasmic membrane which can lead to cell lysis.
                    <sup>
                        <xref ref-type="bibr" rid="ref58">58</xref>
                    </sup> This activity can facilitate the influx of antimicrobial agents to the deeper layers of the polymicrobial biofilm. Brahim et al. (2015) found that the combination of saponin extract with fluconazole showed good synergism against 
                    <italic toggle="yes">C. albicans, C. parapsolosis, C. krusei</italic>, and 
                    <italic toggle="yes">C. glabrata.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref61">61</xref>
                    </sup> Monte et al. (2014) showed the potential of saponins in controlling the shape of plankton and biofilms of 
                    <italic toggle="yes">E. coli</italic> and 
                    <italic toggle="yes">S. aureus.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref62">62</xref>
                    </sup> Triterpenoids with more polar groups such as hydroxyl, carboxyl and carbonyl have anti-biofilm activity due to their hydrophilic nature so they are able to penetrate the exopolysaccharide polymeric matrix in bacterial biofilms and has an effect on bacterial cells in the biofilm, and shows anti-quorum sensing activity.
                    <sup>
                        <xref ref-type="bibr" rid="ref63">63</xref>
                    </sup>
                </p>
                <p>The inhibition value of the positive control alkaline peroxide against polymicrobial biofilm was found to be higher (63.10 &#x00b1; 28.26%) than the MBIC
                    <sub>50</sub> inhibition value of 20% avocado seed extract (50.81 &#x00b1; 8.32%). This shows that alkaline peroxide has a good anti-biofilm effect. Kaypetch et al. (2023) found that acrylic resin soaked in alkaline peroxide for more than 3 hours could efficiently penetrate and inhibit multispecies denture biofilm with an effect comparable to immersion in 0.5% NaClO for 10 minutes.
                    <sup>
                        <xref ref-type="bibr" rid="ref64">64</xref>
                    </sup> Research by Lucena-Ferreira et al. (2013) found that daily use of alkaline peroxide could improve denture cleanliness by reducing total microorganisms and total 
                    <italic toggle="yes">Streptococcus</italic>, but had no effect on the 
                    <italic toggle="yes">Candida</italic> spp. population.
                    <sup>
                        <xref ref-type="bibr" rid="ref65">65</xref>
                    </sup> This is contrary to research by Li et al. (2010) who examined the effect of alkaline peroxide on C. albicans biofilms mixed with microorganisms taken from human saliva samples that were conditioned in cases of denture stomatitis and found that alkaline peroxide was able to reduce the viability of Candida growing on the surface of acrylic resin by 3-4 times.
                    <sup>
                        <xref ref-type="bibr" rid="ref66">66</xref>
                    </sup> However, MBIC
                    <sub>50</sub> avocado seed extract has been declared effective in inhibiting polymicrobial biofilm with an inhibition value exceeding 50% so that 20% avocado seed extract has the potential to be applied clinically as a natural denture cleanser.</p>
                <p>Several limitations have been found in this study. First, the diversity and composition of microorganisms in the polymicrobial biofilm in this study is a broad generalization of the diversity and composition of denture plaque in denture wearers. Second, the research was carried out in vitro, which means that all research variables were under the control of the researcher, which cannot be used to represent the condition of the oral cavity in patients using dentures that can be influenced by factors such as age, gender, habits, and so on. Third, this research can only tell how much of the biofilm biomass that can be inhibited with avocado seed extract, but cannot know what microorganisms are inhibited in the polymicrobial biofilm.</p>
                <sec id="sec28">
                    <title>Ethical considerations</title>
                    <p>This study did not include any human participants or animal. The denture base subjects&#x2019; research was approved on 27
                        <sup>th</sup> February 2024 and performed according to the ethical standards by the Health Research Ethics Committee of the University of Sumatera Utara, Indonesia as stated in letter number 166/KEPK/USU/2024.</p>
                </sec>
            </sec>
        </sec>
    </body>
    <back>
        <sec id="sec31" sec-type="data-availability">
            <title>Data availability</title>
            <p>Figshare: Avocado Seed Extract on Inhibiting Mono-species and Polymicrobial Biofilm. 
                <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.25996006">https://doi.org/10.6084/m9.figshare.25996006</ext-link>.
                <sup>

                    <xref ref-type="bibr" rid="ref67">67</xref>
</sup>
            </p>
            <p>This project contains the following underlying data:
                <list list-type="bullet">
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Ethical Clearance No. 166KEPKUSU2024. pdf</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Determination of Avocado Fruit Plants. pdf</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Phytochemical Test Results of Avocado Seed Ethanol Extract. pdf</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Quantitative Analysis for Phytochemical Compounds. pdf</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Research Data of Mono-species C. albicans Biofilm. docx</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Research Data of Mono-species C. glabrata Biofilm. docx</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Research Data of Mono-species A. odontolyticus Biofilm. docx</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Research Data of Mono-species S. gordonii Biofilm. docx</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Research Data of Mono-species S.aureus Biofilm. docx</p>
                    </list-item>
                    <list-item>
                        <label>&#x2022;</label>
                        <p>Research Data of Polymcrobial Biofilm. docx</p>
                    </list-item>
                </list>
            </p>
            <p>Data are available under the terms of the 
                <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International license</ext-link> (CC-BY 4.0)</p>
        </sec>
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    <sub-article article-type="reviewer-report" id="report320505">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.167602.r320505</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Newaskar</surname>
                        <given-names>Prabha S</given-names>
                    </name>
                    <xref ref-type="aff" rid="r320505a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-5893-3458</uri>
                </contrib>
                <aff id="r320505a1">
                    <label>1</label>Department of Prosthodontics, Pravara Institute of Medical Sciences, Ahmednagar, Maharashtra, India</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>29</day>
                <month>10</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Newaskar PS</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport320505" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.152800.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The current in-vitro study is based on denture plaque microorganism inhibition by avocado seed extract on heat-cured denture base resin. The author considered the 5%, 10%, 15% &amp; 20% concentrations of the same extract and two groups of controls. for the study. and concluded that a 20% concentration was more effective than other concentrations. The following are suggestions for improvement of the current manuscript:</p>
            <p> 1. Abstract:&#x00a0;Ensure that the abstract concisely summarizes the key findings. The methodology, key results, and conclusion can be streamlined further to highlight the core contributions without too much technical detail.</p>
            <p> 2. Methodology:&#x00a0;Include any steps taken to mitigate bias or ensure reproducibility. For instance, if there were any controls (such as positive and negative controls), clearly define how they were handled to ensure the integrity of the experiment.&#x00a0;Specify more details about the process of ensuring the sterility of HPA resin disks or provide a brief explanation of the significance of the preparation technique.</p>
            <p> 3. Result:&#x00a0;Add more visual aids (tables, charts, or graphs) to clarify results. This will make it easier for readers to interpret the data.&#x00a0;provide context to the statistical findings. Instead of just reporting p-values, discuss the biological or practical significance of these results.</p>
            <p> 4.&#x00a0;Discussion: Ensure that each point is directly tied back to the research question. Avoid over-explaining background information already provided in the introduction. Provide a more detailed comparison between your findings and previous studies. Highlight areas where your results diverge or align with other research to emphasize the novelty or contribution of your work.</p>
            <p> 5. Conclusion: You may consider discussing the potential limitations of your study (e.g., the in vitro setting) and suggest avenues for future research.</p>
            <p> 6. Reference &amp; citations:&#x00a0;Double-check all citations to ensure they adhere to the journal's guidelines (e.g., proper format, all sources accounted for).&#x00a0;Ensure recent and relevant literature is cited, particularly on the antimicrobial activity of avocado seed extracts.</p>
            <p> 7. Ethical consideration:&#x00a0;If the study involves the handling of microorganisms, briefly outline the safety measures taken to ensure proper disposal and handling, in compliance with biosafety standards.</p>
            <p> 8. Language &amp; grammar:&#x00a0;Revise for grammatical consistency. For instance, avoid shifting tenses within the same section.&#x00a0;Avoid redundancy. For example, once the MBIC50 is defined, you do not need to explain it repeatedly in different sections.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Prosthodontics, Dental materials, Implants, Maxillofacial prosthodontics, Systematic reviews, Fixed prosthodontics, Removable prosthodontics.</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment13406-320505">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Angela</surname>
                            <given-names>Thalia</given-names>
                        </name>
                        <aff>Department of Dentistry, University of Sumatera Utara, Medan, North Sumatra, Indonesia</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>We do not have any competing interests.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>23</day>
                    <month>2</month>
                    <year>2025</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <bold>First and foremost, we would like to thank the reviewers for the reviews given to improve the content and writing of the articles. We would like to apologize for the long update of the article new version and we are very grateful for your patience. We have made the changes accordingly in the new version and we would also like to humbly respond to some of the reviews given.</bold>
                </p>
                <p> Abstract: Ensure that the abstract concisely summarizes the key findings. The methodology, key results, and conclusion can be streamlined further to highlight the core contributions without too much technical detail.</p>
                <p> 
                    <bold>R: We have tried to streamline the conclusion section of the abstract. However, for the methodology and results, we couldn&#x2019;t do much especially with the previous version review that suggest us to add the name of the test and the statistical tests done on this study. We hope the small changes in the abstract could be sufficient in this revised manuscript.</bold>
                </p>
                <p> Methodology: Include any steps taken to mitigate bias or ensure reproducibility. For instance, if there were any controls (such as positive and negative controls), clearly define how they were handled to ensure the integrity of the experiment. Specify more details about the process of ensuring the sterility of HPA resin disks or provide a brief explanation of the significance of the preparation technique.</p>
                <p> 
                    <bold>R: We have added additional explanation on the process of HPA resin disks sterility and the handling of the controls. </bold>
                </p>
                <p> Result: Add more visual aids (tables, charts, or graphs) to clarify results. This will make it easier for readers to interpret the data. provide context to the statistical findings. Instead of just reporting p-values, discuss the biological or practical significance of these results.</p>
                <p> 
                    <bold>R: We couldn&#x2019;t add more visual aids as we have already included the tables in the result section, in which each table is marked with asterisk to signify certain attention to data. We have also added more data interpretation according to our statistical findings.</bold>
                </p>
                <p> Discussion: Ensure that each point is directly tied back to the research question. Avoid over-explaining background information already provided in the introduction. Provide a more detailed comparison between your findings and previous studies. Highlight areas where your results diverge or align with other research to emphasize the novelty or contribution of your work.</p>
                <p> 
                    <bold>R: We have ensured our point of discussion has referred back to the research purpose and deleted any over-explaining background information. </bold>
                </p>
                <p> Conclusion: You may consider discussing the potential limitations of your study (e.g., the in vitro setting) and suggest avenues for future research.</p>
                <p> 
                    <bold>R: We have added conclusion section and a separate section for the study limitation in the revised manuscript.</bold>
                </p>
                <p> Reference &amp; citations: Double-check all citations to ensure they adhere to the journal's guidelines (e.g., proper format, all sources accounted for). Ensure recent and relevant literature is cited, particularly on the antimicrobial activity of avocado seed extracts.</p>
                <p> 
                    <bold>R: We have double-checked our reference and citations.</bold>
                </p>
                <p> Ethical consideration: If the study involves the handling of microorganisms, briefly outline the safety measures taken to ensure proper disposal and handling, in compliance with biosafety standards.</p>
                <p> 
                    <bold>R: We have added the brief outline of microorganism proper disposal and handling.</bold>
                </p>
                <p> Language &amp; grammar: Revise for grammatical consistency. For instance, avoid shifting tenses within the same section. Avoid redundancy. For example, once the MBIC50 is defined, you do not need to explain it repeatedly in different sections.</p>
                <p> 
                    <bold>R: We have revised our grammatical errors and avoided redundancy.</bold>
                </p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report320506">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.167602.r320506</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Abd-Ellah</surname>
                        <given-names>Mervat E.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r320506a1">1</xref>
                    <xref ref-type="aff" rid="r320506a2">2</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r320506a1">
                    <label>1</label>Department of Prosthodontics, Faculty of Dentistry, Alexandria University, Alexandria, Alexandria Governorate, Egypt</aff>
                <aff id="r320506a2">
                    <label>2</label>Prothodontics, Alexandria University Faculty of Dentistry, Alexandria, Alexandria Governorate, Egypt</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>4</day>
                <month>10</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Abd-Ellah ME</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport320506" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.152800.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>reject</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The work being reviewed is entitled &#x201c; The effect of soaking heat-polymerized acrylic resin denture base in avocado seed extract on the inhibition of denture-plaque microorganisms biofilm growth&#x201d;&#x00a0;&#x00a0;</p>
            <p> </p>
            <p> This study aimed to evaluate the effect of avocado seeds on denture-plaque microorganism biofilm on Heat polymerized acrylic (HPA) resins. It was concluded that 20% avocado seed extract was effective in inhibiting polymicrobial biofilm because it was able to inhibit more than 50% polymicrobial biofilm.&#x00a0;</p>
            <p> </p>
            <p> There are certain limitations for approving this study;</p>
            <p> </p>
            <p> - First, it was mentioned that &#x201c;The avocado seed powder was put into a vessel and poured with 70% ethanol solvent&#x201d; then may be the antimicrobial effect from the ethanol not the avocado seed powder and that makes the idea of the study not sound.</p>
            <p> </p>
            <p> -&#x00a0;Second, the work partly cite the current literature as it does not justify the use of the used concentrations of &#x00a0;avocado seed extract clearly. It was mentioned that &#x201c;Anggraini et al. (2017 [Ref - 1]) studied the inhibition zone of avocado seed extract at concentrations of 10%, 20%, 40%, 80%, 100% on the growth of&#x00a0;
                <italic>C. albicans</italic>, and found that the 10% concentration was the most effective concentration in inhibiting&#x00a0;
                <italic>C. albicans.</italic>
                <sup>
                    <ext-link ext-link-type="uri" xlink:href="https://f1000research.com/my/referee/report/320506?s3BucketUrl=https%3A%2F%2Ff1000research.s3.amazonaws.com&amp;gtmKey=GTM-PCBS9JK&amp;submissionUrl=%2Ffor-authors%2Fpublish-your-research&amp;otid=1bc074d1-3db4-47ed-9f80-df1a4a3f2ab4&amp;immUserUrl=https%3A%2F%2Ff1r-proxy.f1krdev.com%2Feditor%2Fmember%2Fshow%2F#ref22">22</ext-link>
                </sup>&#x00a0;Another study by Talib et al. (2018 [Ref - 2]) tested the effectiveness of avocado seed extract in inhibiting&#x00a0;
                <italic>Streptococcus mutans</italic>&#x00a0;at concentrations of 2%, 4%, 6%, 8%, 10% and found that the most effective concentration was 10%.
                <sup>
                    <ext-link ext-link-type="uri" xlink:href="https://f1000research.com/my/referee/report/320506?s3BucketUrl=https%3A%2F%2Ff1000research.s3.amazonaws.com&amp;gtmKey=GTM-PCBS9JK&amp;submissionUrl=%2Ffor-authors%2Fpublish-your-research&amp;otid=1bc074d1-3db4-47ed-9f80-df1a4a3f2ab4&amp;immUserUrl=https%3A%2F%2Ff1r-proxy.f1krdev.com%2Feditor%2Fmember%2Fshow%2F#ref23">23</ext-link>
                </sup>&#x201d; It was already stated that 10% is the most effective concentration, then it was useless to test the same concentration that was used before. This is an unnecessary repetition. Moreover, it was concluded in the current study that 20% avocado seed extract was effective in inhibiting polymicrobial biofilm but it was not justified way the difference in percentage of avocado seed extract from the literature that stated that 10 % was the most effective concentration in inhibiting&#x00a0;
                <italic>C. albicans</italic>
            </p>
            <p>
                <italic> </italic>
            </p>
            <p>
                <italic> -&#x00a0;</italic>Third, it was mentioned that &#x201c;Sterile HPA resin discs were preconditioned for 24 hours by immersion in artificial saliva.&#x201d; You did not say how the process of sterilization happened. Please clarify.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>I cannot comment. A qualified statistician is required.</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>No source data required</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>No</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>prosthodontics</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to state that I do not consider it to be of an acceptable scientific standard, for reasons outlined above.</p>
        </body>
        <back>
            <ref-list>
                <title>References</title>
                <ref id="rep-ref-320506-1">
                    <label>1</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>EFEKTIVITAS KOMBINASI EKSTRAK DAUN SIRIH MERAH (Piper Crocatum) DAN EKSTRAK BIJI ALPUKAT (Persea americana) DALAM MENGHAMBAT PERTUMBUHAN Candida albicans</article-title>.
                        <source>
                            <italic>Jurnal Kimia Riset</italic>
                        </source>.<year>2017</year>;<volume>2</volume>(<issue>2</issue>) :
                        <elocation-id>10.20473/jkr.v2i2.6196</elocation-id>
                        <pub-id pub-id-type="doi">10.20473/jkr.v2i2.6196</pub-id>
                    </mixed-citation>
                </ref>
                <ref id="rep-ref-320506-2">
                    <label>2</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Efektivitas antibakteri ekstrak biji alpukat (Persea americana Mill.) terhadap Streptococcus mutans (Antibacterial effectiveness of avocado seed (Persea americana Mill.) extract on Streptococcus mutans)</article-title>.
                        <source>
                            <italic>Makassar Dental Journal</italic>
                        </source>.<year>2018</year>;<volume>7</volume>(<issue>1</issue>) :
                        <elocation-id>10.35856/mdj.v7i1.12</elocation-id>
                        <pub-id pub-id-type="doi">10.35856/mdj.v7i1.12</pub-id>
                    </mixed-citation>
                </ref>
            </ref-list>
        </back>
        <sub-article article-type="response" id="comment12674-320506">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Angela</surname>
                            <given-names>Thalia</given-names>
                        </name>
                        <aff>Department of Dentistry, University of Sumatera Utara, Medan, North Sumatra, Indonesia</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>18</day>
                    <month>10</month>
                    <year>2024</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <bold>First and foremost, we would like to thank the reviewers for the reviews given to improve the content and writing of the articles. We have made the changes accordingly in the new version and we would also like to humbly respond to some of the reviews given.</bold>
                </p>
                <p> </p>
                <p> 
                    <bold>Reviewer comments and Angela et al. responses (R.)</bold>
                </p>
                <p> </p>
                <p> First, it was mentioned that &#x201c;The avocado seed powder was put into a vessel and poured with 70% ethanol solvent&#x201d; then may be the antimicrobial effect from the ethanol not the avocado seed powder and that makes the idea of the study not sound.</p>
                <p> </p>
                <p> 
                    <bold>R: We would like to explain the use of 70% ethanol solvent when it was poured inside the vessel containing the avocado seed powder. According to Abubakar et al. (2020), solvent is also known as menstruum which is defined as a liquid chosen for an effective extraction process.
                        <sup>1</sup> The solvent used in this study is ethanol which is a polar solvent that is used to extract polar compounds such as flavonoids and polyphenols. The reason we are using 70% ethanol (water-ethanol) instead of water only is that according to Plaskova et al. (2023), all the bioactive molecules from the plant material cannot be extracted using only single solvent, instead binary solvent mixture such as water and organic solvent are recommended. The study claimed that water-ethanol solvent shows a much better extraction of polyphenols than any single solvent.
                        <sup>2</sup> Another study that supported this claim is a study by Munthe et al. (2023) which concluded that 70% ethanolic extract of avocado seeds using maceration technique showed a strong antioxidant activity.
                        <sup>3</sup> </bold>
                </p>
                <p> 
                    <bold>In our study, at the end of extraction process, the filtered liquid avocado seed extract underwent evaporation on a rotary evaporator which removed the solvents used for extracting the avocado seeds, leaving behind a very thick extract. Plaskova et al. (2023) did mentioned that some residual solvents might remain unintentionally, however the level of the remaining solvent is limited. The study has also presented a table showcasing the maximum limitation of the solvent which can be further read in the published paper.
                        <sup>2</sup> The thick extract that our study has gained are then diluted using aquadest, hence the negative control of our study is also aquadest because it can be said that through the evaporation process, the ethanol solvent has little to no effect in contributing to the antimicrobial effect.</bold>
                </p>
                <p>
                    <bold> </bold>
                </p>
                <p>
                    <bold> References</bold> 
                    <list list-type="order">
                        <list-item>
                            <p>
                                <bold>Abubakar AR, Haque M. Preparation of medicinal plants: basic extraction and fractionation procedures for experimental purposes. 
                                    <italic>J Pharm Bioallied Sci</italic>. 2020;12(1):1-10. doi: 10.4103/jpbs.JPBS_175_19</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Plaskova A, Mlcek. New insights of the application of water or ethanol-water plant extract rich in active compounds in food. 
                                    <italic>Front Nutr</italic>. 2023;10:1118761. doi: 10.3389/fnut.2023.1118761</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Munthe SWN, Riskianto R, Juvi D, Novia J. Antioxidant, total phenolic, and total flavonoid of 70% ethanol extract of avocado seeds (
                                    <italic>Persea americana </italic>Mill.). 
                                    <italic>Pharmacogn J. </italic>2023;15(4):599-605. doi: 10.5530/pj.2023.15.126</bold>
                            </p>
                        </list-item>
                    </list> Second, the work partly cite the current literature as it does not justify the use of the used concentrations of avocado seed extract clearly. It was mentioned that &#x201c;Anggraini et al. (2017 [Ref - 1]) studied the inhibition zone of avocado seed extract at concentrations of 10%, 20%, 40%, 80%, 100% on the growth of C. albicans, and found that the 10% concentration was the most effective concentration in inhibiting C. albicans.
                    <sup>22</sup> Another study by Talib et al. (2018 [Ref - 2]) tested the effectiveness of avocado seed extract in inhibiting Streptococcus mutans at concentrations of 2%, 4%, 6%, 8%, 10% and found that the most effective concentration was 10%.
                    <sup>23</sup>&#x201d; It was already stated that 10% is the most effective concentration, then it was useless to test the same concentration that was used before. This is an unnecessary repetition. Moreover, it was concluded in the current study that 20% avocado seed extract was effective in inhibiting polymicrobial biofilm but it was not justified way the difference in percentage of avocado seed extract from the literature that stated that 10% was the most effective concentration in inhibiting C. albicans.</p>
                <p> </p>
                <p> 
                    <bold>R: We would like to explain the reason why we included those previous studies in our Introduction section and why we did our research based on the concentrations that the previous studies have concluded. Denture plaque that is formed in the denture wearers appliances is not a mono-species biofilm but a polymicrobial one. &#x00a0;O&#x2019;Donnell et al. (2015) declared that denture plaque consists of 
                        <italic>Candida </italic>spp. which co-aggregates with bacteria.
                        <sup>1</sup> The previous studies we included in our paper are only done on planktonic bacteria and fungal, not polymicrobial biofilm. Meanwhile a study by Hamzah et al. (2019) has found that a much higher concentration is needed to inhibit polymicrobial biofilm than mono-species biofilms. Not to mention, the previous studies we included our papers are done on 
                        <italic>C. albicans </italic>and 
                        <italic>S. mutans </italic>while our paper actually studies the effect of avocado seed on 
                        <italic>C. albicans, C. glabrata, A. odontolyticus, S. gordonii, S. aureus</italic>, both mono-species and polymicrobial biofilms
                        <italic>. </italic>Hence, our study still used the previous established effective concentration (10%) with varieties that centered on the concentration from previous studies (5%, 15%, 20%).
                        <sup>2</sup> We also still studied the effect of avocado seed on the mono-species biofilms to not only know which concentration can be determined as the MBIC
                        <sub>50</sub> on each mono-species biofilms, but also to see whether there is truly a difference between the MBIC
                        <sub>50 </sub>of each mono-species biofilm and the polymicrobial biofilm. The result of our study, which summary can be seen on our Abstract section, has shown that MBIC
                        <sub>50 </sub>for each mono-species are different from the previous studies&#x2019; concentration. This shows that our study did not do any unnecessary repetition. </bold>
                </p>
                <p> 
                    <bold>On a side note, we have added further explanation on the research gap in our introduction section. We hope it could add more clearance on the matter. We truly appreciate the feedback given by the reviewer.</bold>
                </p>
                <p> </p>
                <p> 
                    <bold>References</bold> 
                    <list list-type="order">
                        <list-item>
                            <p>
                                <bold>O&#x2019;Donnell LE, Robertson D, Nile CJ, et al.: The oral microbiome of denture wearers is influenced by levels of natural dentition. PLoS One. 2015;10(9):e0137717. 26368937 10.1371/journal.pone.0137717 PMC4569385</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Hamzah H, Hertiani T, Pratiwi SUT, et al.: The inhibition activity of tannin on the formation of mono-spesies and polymicrobial biofilm Escherichia coli, Staphylococcus aureus, Pseudomonas aeruginosa, and Candida albicans. Trad. Med. J. 2019;24(2):110&#x2013;118. 10.35856/mdj.v7i1.12</bold>
                            </p>
                        </list-item>
                    </list> Third, it was mentioned that &#x201c;Sterile HPA resin discs were preconditioned for 24 hours by immersion in artificial saliva.&#x201d; You did not say how the process of sterilization happened. Please clarify.</p>
                <p> </p>
                <p> 
                    <bold>R: We have clarified the sterilization process of the HPA resin discs in the Methods section.</bold>
                </p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report320510">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.167602.r320510</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Mohammed</surname>
                        <given-names>Nada Z.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r320510a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-2107-7010</uri>
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Hamdoon</surname>
                        <given-names>Suhad M.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r320510a2">2</xref>
                    <role>Co-referee</role>
                </contrib>
                <aff id="r320510a1">
                    <label>1</label>Department of Prosthodontics, College of Dentistry, University of Mosul (Ringgold ID: 108489), Mosul, Nineveh Governorate, Iraq</aff>
                <aff id="r320510a2">
                    <label>2</label>Department of Basic Dental Sciences, College of Dentistry, University of Mosul (Ringgold ID: 108489), Mosul, Nineveh, Iraq</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>3</day>
                <month>10</month>
                <year>2024</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2024 Mohammed NZ and Hamdoon SM</copyright-statement>
                <copyright-year>2024</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport320510" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.152800.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>Abstract</p>
            <p> - The Methods are concise, it needs to be more informative, add the name of tests used.</p>
            <p> -You should add a concise information about the statistical analysis that used in the study.</p>
            <p> </p>
            <p> Introduction</p>
            <p> -The introduction is informative but lacks a clear statement of the research gap and aim of the research.</p>
            <p> </p>
            <p> Methods</p>
            <p> -The methodology section is detailed but could benefit from sequential numbering of the subheadings for better organization</p>
            <p> - There are many paragraphs without reference ; you should add the reference.</p>
            <p> - In Avocado seed extraction procedure ; Chromatography also should be carried out to identified the extract composition.</p>
            <p> - Mention the name of&#x00a0; medium used to culture 
                <italic>Actinomyces odontolyticus</italic> on fastidious anaerobe agar.</p>
            <p> - In Biofilm formation on heat polymerized acrylic resin disc ; How much the amount of polymicrobial biofilm was added.</p>
            <p> - Inhibition Value%=[(ControlOD_SampleOD)&#x00f7;-ControlOD]&#x00d7;100; clarify if the subtracted control was the negative or positive ?</p>
            <p> -Statistical analysis required more clarification&#x00a0; as mentioned by adding table for the inhibition value for each extract treatment group obtained by the inhibition formula to be compared directly &#x00a0;</p>
            <p> </p>
            <p> Result</p>
            <p> -The results are presented clearly; but it could be improved; the results display need to be more consistent &#x00a0;without excessively repeating the data. Display the main finding and explain the reason leads to this result</p>
            <p> -Please insert table contain the inhibition value obtained by the inhibition formula</p>
            <p> </p>
            <p> Discussion</p>
            <p> -The authors should enrich the discussion by the analysis and interpreting the obtained results and by comparing the obtained results with what reported in other papers.</p>
            <p> -The limitations of the studies should be presented.</p>
            <p> -The clinical relevance should be further highlighted.</p>
            <p> </p>
            <p> Tables</p>
            <p> -The MBIC50 of avocado seed extract and its effect on polymicrobial biofilm; the 50.81_8.32%. value must be placed in table.</p>
            <p> </p>
            <p> References</p>
            <p> There are too many references. Remove the outdated and unnecessary references .</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Partly</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Prosthetic dentistry, dental materials, Microbiology</p>
            <p>We confirm that we have read this submission and believe that we have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however we have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment12673-320510">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Angela</surname>
                            <given-names>Thalia</given-names>
                        </name>
                        <aff>Department of Dentistry, University of Sumatera Utara, Medan, North Sumatra, Indonesia</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>18</day>
                    <month>10</month>
                    <year>2024</year>
                </pub-date>
            </front-stub>
            <body>
                <p>First and foremost, we would like to thank the reviewers for providing necessary reviews to improve the content and writing of the articles. We have made changes in the new version of the article according to the reviews given.</p>
                <p> </p>
                <p> Reviewer comments and Angela et al. responses (R.)</p>
                <p> </p>
                <p> Abstract</p>
                <p> 1. The Methods are concise, it needs to be more informative, add the name of tests used.</p>
                <p> 2.&#x00a0;You should add a concise information about the statistical analysis that used in the study</p>
                <p> </p>
                <p> R: We have included the name of the test (microtiter biofilm plate assay) and the statistical analysis used in the study as concise as possible.</p>
                <p> </p>
                <p> Introduction</p>
                <p> The introduction is informative but lacks a clear statement of the research gap and aim of the research.</p>
                <p> </p>
                <p> R: We have given a much clearer statements on the research gap and the research aim which can be seen on the last paragraph of the introduction section.</p>
                <p> </p>
                <p> &#x00a0;Methods</p>
                <p> 1.&#x00a0;The methodology section is detailed but could benefit from sequential numbering of the subheadings for better organization</p>
                <p> </p>
                <p> R: We have added sequential numbering on the methods section.</p>
                <p> </p>
                <p> 2. There are many paragraphs without reference; you should add the reference.</p>
                <p> </p>
                <p> R: We have added necessary references on the methods section.</p>
                <p> </p>
                <p> 3.&#x00a0;In Avocado seed extraction procedure; Chromatography also should be carried out to identified the extract composition.</p>
                <p> </p>
                <p> R: We do agree that the extract can use Chromatography to further identify the extract composition. In our research location, the only available Chromatography is Gas Chromatography Mass Spectrometry (GC-MS). However, we decided not to do the test during our research period as we only wanted to know the presence of flavonoids, polyphenols, alkaloids, and saponin in our avocado seed extract as many research have shown their antimicrobial properties in order to make sure that we fulfilled the purpose of our study which is to know the effect of avocado seed extract on denture plaque microorganisms grown on HPA resin. The two tests we have done, phytochemical examination and its quantitative tests, have shown the existence of those compound and specified their amount in the extract. Hence, we directly continue our research without doing Chromatography.</p>
                <p> </p>
                <p> 4.&#x00a0;Mention the name of medium used to culture 
                    <italic>Actinomyces odontolyticus</italic> on fastidious anaerobe agar.</p>
                <p> </p>
                <p> R: We have previously written the name of the medium used to culture 
                    <italic>A. odontolyticus&#x00a0; </italic>which is fastidious anaerobe agar which we supplemented with 5% (v/v) defibrinated bovine blood.</p>
                <p> </p>
                <p> 5.&#x00a0;In Biofilm formation on heat polymerized acrylic resin disc; How much the amount of polymicrobial biofilm was added.</p>
                <p> </p>
                <p> R: We have specified the amount of polymicrobial biofilm added which can be seen on the second subheading &#x201c;Biofilm formation on heat polymerized acrylic resin disc&#x201d;</p>
                <p> </p>
                <p> 6.&#x00a0;Inhibition Value%=[(ControlOD_SampleOD)&#x00f7;-ControlOD]&#x00d7;100; clarify if the subtracted control was the negative or positive?</p>
                <p> </p>
                <p> R: We confirmed that the ControlOD for the inhibition value formula is positive, not negative.</p>
                <p> </p>
                <p> 7.&#x00a0;Statistical analysis required more clarification as mentioned by adding table for the inhibition value for each extract treatment group obtained by the inhibition formula to be compared directly</p>
                <p> </p>
                <p> R:&#x00a0; We have added the inhibition value table on the Result section.</p>
                <p> </p>
                <p> Result</p>
                <p> 1. The results are presented clearly; but it could be improved; the results display need to be more consistent without excessively repeating the data. Display the main finding and explain the reason leads to this result</p>
                <p> </p>
                <p> R: We have removed the repetitive sentences.</p>
                <p> </p>
                <p> 2. Please insert table contain the inhibition value obtained by the inhibition formula</p>
                <p> </p>
                <p> R: We have replaced the figures of inhibition value into tables (Table 3 dan Table 5).</p>
                <p> </p>
                <p> Discussion</p>
                <p> 1. The authors should enrich the discussion by the analysis and interpreting the obtained results and by comparing the obtained results with what reported in other papers.</p>
                <p> </p>
                <p> R: We would like to apologize for our paper shortcoming. We have previously included as much other paper results as possible, however there is still limited data that can be used as comparison, especially for the microorganisms that we studied in this paper, such as 
                    <italic>C. glabrata, A. odontolyticus, S. gordonii</italic>.</p>
                <p> </p>
                <p> 2.&#x00a0;The limitations of the studies should be presented.</p>
                <p> </p>
                <p> R: We have presented the limitations of the study and made a separate section for it.</p>
                <p> </p>
                <p> 3.&#x00a0;The clinical relevance should be further highlighted.</p>
                <p> R: We have highlighted the clinical relevance which is written on the last sentence in the discussion section, above the study limitation.</p>
                <p> </p>
                <p> Tables</p>
                <p> The MBIC50 of avocado seed extract and its effect on polymicrobial biofilm; the 50.81_8.32%. value must be placed in table.</p>
                <p> </p>
                <p> R: We have added it to Table 5 in the results section.</p>
                <p> </p>
                <p> References</p>
                <p> There are too many references. Remove the outdated and unnecessary references</p>
                <p> </p>
                <p> R: We have removed the outdated and unnecessary references.</p>
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        </sub-article>
    </sub-article>
</article>
