<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.162353.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Optimizing Cardiovascular Treatment in Non-Small Cell Lung Cancer: A Comprehensive Computational Approach for Assessment of Drug-Drug Interactions between Tyrosine Kinase Inhibitors and Cardiovascular Drugs</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved, 1 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Patil</surname>
                        <given-names>Prajakta</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Desai</surname>
                        <given-names>Mrunal</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Baburaj</surname>
                        <given-names>Gayathri</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Thomas</surname>
                        <given-names>Levin</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Subeesh</surname>
                        <given-names>Viswam</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Birangal</surname>
                        <given-names>Sumit</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-7129-5748</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Rao</surname>
                        <given-names>Mahadev</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Shenoy</surname>
                        <given-names>Gurupur Gautham</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>P. C.</surname>
                        <given-names>Jagadish</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-5956-7499</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Pharmaceutical Chemistry, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India</aff>
                <aff id="a2">
                    <label>2</label>Department of Pharmacy Practice, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:jagadish.pc@manipal.edu">jagadish.pc@manipal.edu</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>19</day>
                <month>3</month>
                <year>2025</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2025</year>
            </pub-date>
            <volume>14</volume>
            <elocation-id>309</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>5</day>
                    <month>3</month>
                    <year>2025</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2025 Patil P et al.</copyright-statement>
                <copyright-year>2025</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/14-309/pdf"/>
            <abstract>
                <sec>
                    <title>Background</title>
                    <p>As lung cancer treatment has progressed, there has been an increase in awareness of the short- and long-term adverse effects of targeted cancer therapies of tyrosine kinase inhibitors, particularly cardiovascular toxicities.</p>
                </sec>
                <sec>
                    <title>Methods</title>
                    <p>The current study assessed the potential drug interactions using interaction drug-interaction checkers (IBM Micromedex and 
                        <uri xlink:href="http://Drugs.com">Drugs.com</uri>). Molecular docking was employed to further investigate the involvement of human ether-&#x00e0;-go-go-related gene (hERG) and pregnane X receptor (PXR) proteins to elucidate their potential interactions and underlying mechanisms.</p>
                </sec>
                <sec>
                    <title>Result</title>
                    <p>A total of 74 pharmacokinetic and 105 pharmacodynamic interactions were detected between tyrosine kinase inhibitors and cardiovascular drugs, along with a report on the severity and level of documentation. A considerable fraction of molecular modelling outcomes concurred with information of drug-drug interaction checkers. The binding energies of tyrosine kinase inhibitors with hERG and PXR were high, indicating significant interactions. The cardiovascular drug class encompasses calcium channel blockers, antiarrhythmic medicines, and statins, which exhibit synergistic interactions. The identification of these potential drug-drug interactions involving CYP3A4, P-gp, and hERG proteins can be utilized in therapy optimization in clinical settings.</p>
                </sec>
                <sec>
                    <title>Conclusion</title>
                    <p>This study will aid clinicians in designing safe dosage regimens for patients with lung cancer. In cases where patients have multiple comorbidities, it is essential to study the clinical aspects to design efficient chemotherapy and manage adverse effects and toxicities.</p>
                </sec>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Cardiovascular drugs</kwd>
                <kwd>Drug-drug interactions</kwd>
                <kwd>NSCLC</kwd>
                <kwd>IBM Micromedex</kwd>
                <kwd>Drugs.com</kwd>
                <kwd>Molecular docking</kwd>
                <kwd>TKI</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec5" sec-type="intro">
            <title>1. Introduction</title>
            <p>The global prevalence of lung cancer as the primary cause of cancer-induced mortality is expected to continue in the foreseeable future. According to the GLOBACON report 2020, lung cancer is the leading cause of new cancer cases worldwide, comprising 11.4% of all cancers and resulting in 18% of cancer-related fatalities.
                <sup>
                    <xref ref-type="bibr" rid="ref1">1</xref>
                </sup> Approximately 85% of lung tumors are non-small cells and out of them, 60% to 70% of non-small cell lung cancer (NSCLC) patients exhibit stage III or stage IV disease.
                <sup>
                    <xref ref-type="bibr" rid="ref2">2</xref>
                </sup> The approval of multiple tyrosine kinase inhibitors (TKI) in the last decade has significantly transformed the management of NSCLC. More than 22 TKIs are currently being utilized in clinical settings or are undergoing advanced trials to target oncogenic drivers of NSCLC, including EGFR, BRAF, MET, ALK fusion rearrangement, and ROS 1-fusion rearrangement.
                <sup>
                    <xref ref-type="bibr" rid="ref3">3</xref>,
                    <xref ref-type="bibr" rid="ref4">4</xref>
                </sup> Currently, several FDA-approved first-line therapies exist for patients with metastatic NSCLC with epidermal growth factor receptor (EGFR) exon 19 deletions or exon 21 L858R mutations, which work by competitively blocking ATP binding and subsequent phosphorylation of the EGFR tyrosine kinase domain.
                <sup>
                    <xref ref-type="bibr" rid="ref5">5</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref7">7</xref>
                </sup>
            </p>
            <p>The objective of targeted therapies for NSCLC is to enhance anticancer efficacy while minimizing adverse effects compared to traditional anticancer medications. This approach has yielded promising results, leading to a significant increase in the number of targeted therapeutic agents developed over the last decade.
                <sup>
                    <xref ref-type="bibr" rid="ref8">8</xref>
                </sup> Nevertheless, extensive utilization of this approach has raised concerns regarding its potential cardiotoxicity and off-target effects. Pathways that give rise to pathological survival and uncontrolled proliferation of cancer cells often affect the survival of normal cells, including cardiomyocytes. Inhibition of prosurvival kinases in regular cardiomyocytes may lead to cardiomyopathy, which is a clear manifestation of on-target cardiotoxicity when targeting these pathways in cancer cells.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>
                </sup> The widespread use of TKIs has raised concerns regarding their potential cardiotoxicity and associated symptoms, including, but not limited to, heart failure, arrhythmia/QT prolongation, hypertension, and acute coronary syndrome/myocardial ischemia. Individuals with preexisting cardiac illnesses are at a heightened risk of cardiac damage. It has been observed that 23% of patients diagnosed with lung cancer also have underlying cardiovascular (CV) conditions. The risk of cardiovascular disease (CVD) is elevated in such individuals with lung cancer. The observed association could potentially be attributed to the presence of chronic inflammation in CVD.
                <sup>
                    <xref ref-type="bibr" rid="ref10">10</xref>,
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup>
            </p>
            <p>In response to this issue, various oncology and cardiology governing bodies in the United States and Europe have released guidelines regarding the monitoring of patients undergoing cancer treatments that may have cardiotoxic effects. These guidelines cover the management of CV toxicities and monitoring of CVD in patients with cancer.
                <sup>
                    <xref ref-type="bibr" rid="ref12">12</xref>
                </sup> Left ventricular dysfunction (LVD) and heart failure (HF) are prevalent markers of cardiotoxicity associated to anti-cancer therapies. The long-term use of crizotinib has been linked to bradycardia and QT prolongation. In a phase III clinical trial, it was observed that 69% of patients experienced at least one episode of asymptomatic sinus bradycardia, which is characterized by a heart rate of less than 60 beats per minute. Additionally, 1.4% of patients exhibited QTc prolongation.
                <sup>
                    <xref ref-type="bibr" rid="ref13">13</xref>,
                    <xref ref-type="bibr" rid="ref14">14</xref>
                </sup> Reports have indicated that TKIs that interfere with the vascular endothelial growth factor (VEGF) signalling pathway can result in hypertension. The frequency of adverse effects in patients receiving VEGFR inhibitors ranges from 11% to 45%. The prevalence of hypertension has been reported to vary between 17% and 42% in patients treated with sorafenib and between 15% and 47% in those treated with sunitinib.
                <sup>
                    <xref ref-type="bibr" rid="ref9">9</xref>,
                    <xref ref-type="bibr" rid="ref10">10</xref>
                </sup> Anthracyclines, mitotic inhibitors, alkylating agents, proteasome inhibitors, and TKIs have all been linked to cardiotoxicity and symptoms, such as ischemia, arrhythmias, hypertension, LVD, and the development of clinical heart HF.
                <sup>
                    <xref ref-type="bibr" rid="ref11">11</xref>
                </sup> The European Society for Medical Oncology (ESMO) favors the use of angiotensin-converting enzyme (ACE) II inhibitors in asymptomatic patients with LVD who exhibit an ejection fraction of less than 40%. A proactive pharmacological approach is recommended for the management of hypertension associated with cancer treatment to reduce the risk of CV complications. In this particular situation, the most favored pharmacological agents for managing hypertension are ACE inhibitors and dihydropyridine calcium channel blockers. This assertion holds particularly true in cases where VEGF therapy is utilized.
                <sup>
                    <xref ref-type="bibr" rid="ref15">15</xref>,
                    <xref ref-type="bibr" rid="ref16">16</xref>
                </sup>
            </p>
            <p>The treatment of associated cardiovascular diseases in patients with NSCLC necessitates the use of multiple medications, leading to polypharmacy. Consequently, the potential for clinically significant DDIs is a crucial factor to be considered, particularly for patients who are prescribed multiple medications to manage comorbidities, as this may result in heightened toxicity or reduced therapeutic efficacy of the anticancer drugs. Empirical research conducted on cancer patients has recorded the interactions of TKIs with antiepileptic drugs, proton pump inhibitors, antiretroviral medications, antibiotics, and grapefruit juice, with an average rate of drug-drug interactions ranging from 4-40%. Furthermore, pharmacological interventions intended to manage cardiovascular toxicities can also potentially result in DDIs. It is noteworthy that inquiries concerning such interactions are frequently omitted from preliminary clinical trials conducted during the initial phases of pharmaceutical development. Advancements in improving cancer survival rates are also sometimes overshadowed by pharmacokinetic/pharmacodynamic interactions associated with TKIs and medications used to treat concurrent CVD.</p>
            <p>Therefore, the primary objective of this investigation was to identify plausible pharmacokinetic and pharmacodynamic DDIs in individuals diagnosed with NSCLC and are prescribed TKIs and concomitant CVDs through a comprehensive methodology that combines drug interaction checkers, IBM Micromedex
                <sup>&#x00ae;</sup>, and 
                <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>
                <sup>&#x00ae;</sup>, as well as an in-silico modelling technique for molecular docking. The integration of data obtained from the DDI checker softwares and in silico computational technique is anticipated to yield a more all-encompassing depiction and projection of probable DDIs linked to TKIs and CV medications. This will aid oncologists in adjusting dosages, selecting an optimal standard care protocol, and delivering optimal supportive care.</p>
        </sec>
        <sec id="sec6" sec-type="methods">
            <title>2. Methods</title>
            <sec id="sec7">
                <title>2.1 Identification of potential DDIs by Micromedex software and 
                    <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>
</title>
                <p>To identify potential DDIs between CV drugs and TKIs used in NSCLC treatment, all generic names were added to the drug interaction checkers, that is IBM Micromedex (
                    <ext-link ext-link-type="uri" xlink:href="https://www.micromedexsolutions.com/">https://www.micromedexsolutions.com/</ext-link>) and 
                    <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link> (
                    <ext-link ext-link-type="uri" xlink:href="https://www.drugs.com/drug_interactions">https://www.drugs.com/drug_interactions</ext-link>). Both interaction checking tools were used till July 30, 2024. The severity of potential pharmacokinetic and pharmacodynamic DDIs from IBM Micromedex was classified into five groups: contraindicated, major, moderate, minor, and no interaction reported. Drugs. com results were classified as major, moderate, or minor. The list of TKIs used in the treatment of NSCLC was compiled from the National Comprehensive Cancer Network (NCCN) Guidelines and Food and Drug Administration (FDA) approved NSCLC drugs. The CV drugs prescribed for cancer patients with CVD were compiled from the ESMO (
                    <ext-link ext-link-type="uri" xlink:href="https://www.esmo.org/guidelines">https://www.esmo.org/guidelines</ext-link>) guidelines.
                    <sup>
                        <xref ref-type="bibr" rid="ref16">16</xref>&#x2013;
                        <xref ref-type="bibr" rid="ref21">21</xref>
                    </sup>
                </p>
            </sec>
            <sec id="sec8">
                <title>2.2 Identification of potential DDIs by molecular docking</title>
                <p>

                    <bold>

                        <italic toggle="yes">2.2.1 Protein and ligand preparation</italic>
</bold>
                </p>
                <p>The crystal structures of human pregnane X receptor (PXR) proteins (PDB ID: 5XOR) and the human ether-a-go-go-related gene (hERG) were downloaded from the Protein Data Bank (
                    <ext-link ext-link-type="uri" xlink:href="http://www.rcsb.org/pdb">http://www.rcsb.org/pdb</ext-link>) and Schr&#x00f6;dinger knowledgebase (
                    <ext-link ext-link-type="uri" xlink:href="https://www.schrodinger.com/">https://www.schrodinger.com/</ext-link>), respectively. The protein crystal structure was optimized using the Schrodinger 2021-2 Protein Preparation Wizard. Protein pre-processing was accomplished through bond order assignment, hydrogen addition, disulfide treatment, and the removal of water molecules from hetero groups larger than 5 &#x00c5;. Hydrogen bonds were assigned and the alignments of the remaining water molecules were adjusted. Finally, using the OPLS4 force field at pH 7.4, the energy of the protein structure was reduced to an RMSD of 0.30 &#x00c5;. The co-crystallized ligand was retained in the prepared protein using the default parameters, which were then used for grid construction. As there was no bound ligand in the case of hERG, site map analysis was performed using the site map analysis module to identify the top-ranked receptor-binding sites of the enzyme.
                    <sup>
                        <xref ref-type="bibr" rid="ref22">22</xref>
                    </sup> In the case of PXR, since the protein was bound to an antagonist/activator, the same site was selected for molecular docking in the presence and absence of an antagonist. The structural details of the 22 TKIs and 76 CV drugs were retrieved from the PubChem database. Ligand preparation for TKIs and CV drugs was carried out at pH 7.4, using the Lig-prep application of the Maestro 11.08 module of the Schrodinger
                    <sup>&#x00ae;</sup> suite 2021-2 in accordance with a previously reported procedure using the OPLS4 force field to minimize the energy of the structures and to correct the chirality. A grid was generated at the center of the PDB 5X0R co-crystallized ligand and top-ranked site of the hERG protein. Flexible molecular ligand docking was performed using extra precision (XP) mode and force field OPLS4. Ten poses per ligand were generated and the RMSD values were calculated. Cluster analysis was carried out on the RMSD values to determine the best docking&#x2013;binding pose, using an RMSD tolerance of 1.0 &#x00c5; Default values were used for other parameters. Docked poses were chosen based on the best docking score and protein-ligand interactions. The ligand position in the center of a 10 &#x00c5; docking sphere was restricted. All molecules were also docked with the protein at the ligand-binding site using the Schrodinger suite-2021-2 &#x201c;XP&#x201d; Glide algorithm.</p>
                <p>

                    <bold>

                        <italic toggle="yes">2.2.2 Induced fit docking and PRIME MMGBSA analysis</italic>
</bold>
                </p>
                <p>After XP docking, 16 TKIs and 45 CV drugs with the best docking scores and poses were selected for flexible induced-fit protein-ligand docking using the induced-fit docking (IFD) module of the Maestro 12.7 molecular modelling platform (generates up to 20 poses using automatic docking protocol). The binding affinity of each TKI and CV drug to both PXR and hERG proteins was evaluated using the Prime-MMGBSA module of Schr&#x00f6;dinger Suite 2021-2 (Schr&#x00f6;dinger, LLC, New York, NY, 2021) for all poses generated by the IFD. The total free energy of binding, dGbind (kcal/mol), was estimated using this software. A grid spacing of 0.5 &#x00c5; was chosen and the dielectric constants for the solute and solvent were set to 1 and 80, respectively.
                    <sup>
                        <xref ref-type="bibr" rid="ref23">23</xref>
                    </sup> The total energy term is a combination of Coulomb energy, covalent binding energy, van der Waals energy, lipophilic energy, prime energy, hydrogen-bonding energy, pi-pi packing energy, and self-contact correction. A scoring method was applied to calculate the net dG bind (NB), by calculating the mean IFD scores obtained for each ligand at different poses as described by Thomas et al.
                    <sup>
                        <xref ref-type="bibr" rid="ref22">22</xref>
                    </sup>
                </p>
            </sec>
        </sec>
        <sec id="sec9" sec-type="results">
            <title>3. Results</title>
            <sec id="sec10">
                <title>3.1 Identification of potential DDIs by Micromedex software and 
                    <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>
</title>
                <p>The objective was to evaluate the potential DDIs of calcium channel blockers, ACE inhibitors, statins, cardiac glycosides, &#x03b2;-adrenergic blockers, and other drugs utilized in the management of cardiovascular disease, in patients on TKI chemotherapy. 
                    <xref ref-type="table" rid="T1">
Table 1</xref> presents an extensive list of 75 significant pharmacokinetic and 102 crucial pharmacodynamic DDIs between TKIs and CV drugs. The table includes information on the severity of the interactions and level of documentation obtained from IBM Micromedex and 
                    <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>. Seven contraindicated pharmacokinetic and pharmacodynamic interactions were identified using CV drugs. Of the 76 CV drugs screened, 45 showed DDIs with TKIs, based on the severity of the interaction. Twenty-two DDIs were identified to be having excellent documentation level, as per the IBM Micromedex data.</p>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>
Table 1. </label>
                    <caption>
                        <title>Severity classification of pDDIs of CV drugs with TKIs.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="2" valign="top">Severity classification of pDDIs</th>
                                <th align="left" colspan="3" rowspan="1" valign="top">Micromedex n (%)</th>
                                <th align="left" colspan="3" rowspan="1" valign="top">

                                    <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link> n (%)</th>
                            </tr>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">PK</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">PD</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Both</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">PK</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">PD</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
Both</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Contraindicated</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">6 (13.95)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Major</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">57 (91.9)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">37 (86.04)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">10 (100)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">17 (7.76)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">64 (57.1)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Moderate</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">5 (8.0)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">202 (92.2)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">48 (42.8)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Minor</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Total number of pDDIs</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">62 (100)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">43 (100)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">10 (100)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">219 (100)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">112 (100)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">N/A</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn1">
                                <label>*</label>
                                <p>pDDIs: potential drug-drug interactions; N/A: not applicable; PK: Pharmacokinetic; PD: Pharmacodynamic.</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
                <p>

                    <bold>

                        <italic toggle="yes">3.1.1 Pharmacokinetic interactions with PXR</italic>
</bold>
                </p>
                <p>Sixteen TKIs and 45 CV drugs were found to exhibit significant pharmacokinetic DDIs based on analysis using IBM Micromedex software, 
                    <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>, and the IFD docking score for both PXR and hERG proteins. The results are presented in 
                    <xref ref-type="fig" rid="f1">Figures 1</xref> and 
                    <xref ref-type="fig" rid="f2">2</xref> for IBM Micromedex and Drugs. Com, respectively. Most of the observed pharmacokinetic interactions were attributed to the potential of CV drugs and TKIs to either inhibit or induce the PXR protein. 
                    <xref ref-type="table" rid="T2">
Table 2</xref> displays the net scores obtained from the IFD for TKIs and CV drugs. The molecular docking technique was used to determine the net binding score and establish the potency of these drugs in inhibiting PXR. Net binding scores were calculated for various TKIs using the induced fit docking of the PXR protein. The highest net binding scores were observed for tepotinib (NB = -880.57), cabozantinib (NB = -867.70), entrectinib (NB = -867.55), moboceritinib (NB = -855.66), osimeritinib (NB = &#x2212; 844.43), trametinib (NB = -796.00) and brigatinib (NB = -785.75), as shown in 
                    <xref ref-type="table" rid="T2">
Table 2</xref>). Previous studies (As represented in the Underlying dataset) have reported that these TKIs can function as substrates or inhibitors of both CYP450 and P-gp.
                    <sup>
                        <xref ref-type="bibr" rid="ref24">24</xref>
                    </sup>
                </p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>
Figure 1. </label>
                    <caption>
                        <title>Severity chart for interactions between TKI and CV drugs identified by Micromedex
                            <sup>&#x00ae;</sup> software.</title>
                    </caption>
                    <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/178544/ac6a2f4b-58ab-4b10-b075-691b49249a75_figure1.gif"/>
                </fig>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>
Figure 2. </label>
                    <caption>
                        <title>Severity chart for interactions between TKI and CV drugs identified by 
                            <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>
                            <sup>&#x00ae;</sup>.</title>
                    </caption>
                    <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/178544/ac6a2f4b-58ab-4b10-b075-691b49249a75_figure2.gif"/>
                </fig>
                <table-wrap id="T2" orientation="portrait" position="float">
                    <label>
Table 2. </label>
                    <caption>
                        <title>Net binding energy of individual TKIs drugs and CV drugs with PXR and hERG proteins.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Drug Category</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Compounds</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">PXR</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
hERG</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="21" valign="middle">
                                    <bold>NSCLC TKIs</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Afatinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-699.28</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-440.25</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Alectinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-744.33</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-488.32</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Brigatinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-785.75</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-470.41</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Cabozantinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-867.70</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-543.82</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Capmatinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-670.82</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-460.27</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ceritinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-733.37</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-484.40</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Crizotinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-679.99</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-348.19</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Dabrafenib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-511.28</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-382.66</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Dacomitinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-511.28</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-382.66</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Entrectinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-867.55</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-523.75</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Erlotinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-725.35</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-459.49</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Gefitinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-722.00</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-448.05</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Larotrectinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-647.03</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-407.13</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Lorlatinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-580.16</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-322.69</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Mobocertinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-855.66</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-447.48</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Osimertinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-844.43</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-468.28</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Pralsetinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-691.52</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-425.55</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Selpercatinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-699.42</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-521.97</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Sotorasib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-733.97</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-463.74</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Tepotinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-880.57</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-520.27</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Trametinib</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-796.00</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-494.30</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="8" valign="middle">
                                    <bold>ACE inhibitors</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Fosinopril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1798.77</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-770.45</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Moexipril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1266.99</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-865.22</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Benazepril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1445.26</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-688.35</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Trandolapril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1591.7725</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-712.45</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Quinalapril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1471.32</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-746.18</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Lisinopril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1263.38</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-770.41</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Enalapril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1201.64</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NA</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Captopril</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-591.09</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-377.82</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="6" valign="middle">
                                    <bold>Angiotensin II blockers</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Irbesartan</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1540.61</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-655.82</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Losartan</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1584.54</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-887.16</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Telmisartan</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-2252.21</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1139.66</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Candesartan</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1010.3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-443.99</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Valsartan</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-850.314</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-416.80</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Olmesartan</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1521.57</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-947.03</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="4" valign="middle">
                                    <bold>Anticoagulant</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Apixaban</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-2119.13</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NA</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Edaxaban</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-2176.09</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-717.70</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Enoxaparin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NA</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-52.02</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Rivaroxaban</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1901.58</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1248.11</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="8" valign="middle">
                                    <bold>B adrenergic blockers</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Atenolol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1485.54</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1115.21</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Bisoprolol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1616.49</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1309.66</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Carvedilol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-2068.62</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1167.89</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Labetalol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1195.43</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-652.11</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Metoprolol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1512.02</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1156.43</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Pindolol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1303.94</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-874.82</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Propranolol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1408.91</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1125.55</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Sotalol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1168.67</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-999.75</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="8" valign="middle">
                                    <bold>Ca Channel blocker</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Diltiazem</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1768.94</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1112.12</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Felodipine</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1398.12</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-935.18</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Nifedipine</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1116.01</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-924.97</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Nicardipine</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1878.41</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1244.34</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Nimodipine</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1289.5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1087.17</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Verapamil</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-2172.57</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1219.60</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Amlodipine</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1732.96</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1140.35</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Nitrendipine</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1475.34</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1010.26</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="4" valign="middle">
                                    <bold>Dual antiplatelet agents</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Aspirin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-552.948</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1219.60</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Clopidogrel</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1550.55</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NA</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Prasugrel</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1654.84</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NA</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Warfarin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1034.21</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-579.85</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="2" valign="middle">
                                    <bold>Statins</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Simvastatin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1768.12</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-877.75</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Pravastatin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1351.41</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-866.47</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="17" valign="middle">
                                    <bold>Others</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Dabigatran</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1736.23</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1016.93</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Digoxin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NA</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-771.36</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Dofetilide</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1691.74</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-938.80</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Dronedarone</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-2235.37</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1210.14</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Eplerenone</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1642.66</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-869.22</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Quinidine</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1791.56</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1249.65</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Torsemide</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1149.07</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-567.09</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ouabain</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1766.71</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-891.84</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Proscillaridin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1764.54</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1094.61</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Amiodarone</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-2081.18</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1144.70</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Cymarin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1773.25</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-941.75</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Digoxigenin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1573.11</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-964.18</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Indapamide</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-1470.71</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-986.82</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Hydrochlorothiazide</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-880.518</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-646.37</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Bumetanide</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-979.594</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-710.80</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Piretanide</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-956.431</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-546.96</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Spironolactone</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-997.025</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">-451.19</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn2">
                                <label>*</label>
                                <p>NA: Not enough poses to calculate binding energy.</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
                <p>The net binding energy was computed using the docking scores obtained from the IFD of distinct CV on the PXR protein. The compounds amiodarone, carvedilol, telmisartan, verapamil, dabigatran, amlodipine, nicardipine, fosinopril, olmesartan, edexaban, apixaban, and simvastatin exhibited favorable binding interactions with the PXR protein, as evidenced by their negative binding energies (-2081.18, -2068.62, -2252.21, -2172.57, -1736.23, -1732.96, -1878.41, -1798.77, -1521.57, -2176.09, -2119.13, and -1768.12 Kcal/mol respectively). 
                    <xref ref-type="table" rid="T2">
Table 2</xref> presents the net binding energies obtained through IFD of certain CV drugs. PXR has been characterized as a chemical sensor possessing a ligand-binding domain that exhibits flexibility, allowing for the accommodation and adaptation of various molecules. The PXR protein contains several key amino acid residues responsible for ligand binding. Specifically, TRP299, GLN285, MET323, HIS327, SER247, LEU209, MET243, PHE251, PHE281, CYS284, and MET323 are known to play crucial roles in this process.
                    <sup>
                        <xref ref-type="bibr" rid="ref25">25</xref>,
                        <xref ref-type="bibr" rid="ref26">26</xref>
                    </sup> For CV drugs, the induced fit docking method was used to first calculate the docking score and then the binding energy. The results indicated that calcium channel blockers, specifically verapamil, nicardipine, diltiazem, amlodipine, and nifedipine, displayed the most substantial binding energies. Calcium channel blockers, which can affect the metabolism and absorption of TKIs, have been identified as potent inhibitors of CYP3A4 and P-gp. This can lead to pharmacokinetic drug-drug interactions when these two drugs are administered concurrently. In addition, various in vitro studies have demonstrated that antiarrhythmic and dual antiplatelet medications, including amiodarone, dronedarone, and ticagrelor, significantly inhibit CYP3A4 and P-gp. The binding energy obtained against the PXR protein supports the hypothesis made in the literature.
                    <sup>
                        <xref ref-type="bibr" rid="ref27">27</xref>&#x2013;
                        <xref ref-type="bibr" rid="ref30">30</xref>
                    </sup>
                </p>
                <p>This study utilized a co-docking approach to investigate the capacity of CV drugs to interact with and activate PXR in the presence and absence of TKIs. The aim of this study was to observe any synergistic effects on the binding energies of the co-docked pose. The majority of interactions arise from the interaction between TKIs, whereas CV drugs either inhibit or induce CYP3A4 or P-gp. This can result in an increase in the TKI plasma levels. Co-docking analysis of PXR revealed an increase in the binding energy of specific CV drugs in the presence of TKIs at the docking site. Afatinib is both a substrate and inhibitor of P-gp. Co-docking studies have shown that the binding energies of amiodarone (BE = -48.01), spironolactone (BE = -23.13), proscillaridin (BE = -34.89), and telmisartan (BE = -25.48) increased synergistically when docked in combination with afatinib. Validation of this predicted result requires additional supportive clinical data. Cabozantinib is a reported substrate of CYP3A4 and inhibitor of P-gp. The results of the co-docking studies revealed that the interactions with CV drugs, such as amiodarone, dabigatran, and edoxaban, were the most prominent (
                    <xref ref-type="fig" rid="f3">Figure. 3</xref>). This study revealed that the presence of ceritinib had a notable impact on the binding energies of several drugs, including amiodarone (BE = -43.84), nimodipine (BE = -39.63), apixaban (BE = -45.14), simvastatin (BE = -45.06), felodipine (BE = -40.29), torsemide (BE = -44.25), losartan (BE = -32.24), cymarin (BE = -42.25), lovastatin (BE = -44.7), telmisartan (BE = -35.25), warfarin (BE = -27.19), and proscillaridin (BE = -27.65). These interactions were significantly different from those observed with other TKIs and CV drugs (
                    <xref ref-type="fig" rid="f4">Figure 4</xref>). Moboceritinib, a moderate inhibitor of both CYP3A4 and P-gp, exhibited significant pharmacokinetic interactions with amiodarone (BE = -50.15), proscillaridin (BE = -22.31), and telmisartan (BE = -27.62), all of which are inhibitors of CYP3A4 and P-gp (As represented in the underlying dataset).</p>
                <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                    <label>
Figure 3. </label>
                    <caption>
                        <title>PXR protein showing PXR-LBD and AF-2 SRC-1 region.</title>
                        <p>Binding mode of 3D interaction scheme at PXR LBD binding site near to AF-2 helix of cabozantinib co-docked pose with (A) amiodarone, and (B) edaxaban.</p>
                    </caption>
                    <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/178544/ac6a2f4b-58ab-4b10-b075-691b49249a75_figure3.gif"/>
                </fig>
                <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                    <label>
Figure 4. </label>
                    <caption>
                        <title>PXR protein showing PXR-LBD and AF-2 SRC-1 region.</title>
                        <p>Binding mode of 3D interaction scheme at PXR LBD binding site near to AF-2 helix of ceritinib co-docked pose with (A) amiodarone, (B) apixaban, (C) losartan and (D) nifedipine.</p>
                    </caption>
                    <graphic id="gr4" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/178544/ac6a2f4b-58ab-4b10-b075-691b49249a75_figure4.gif"/>
                </fig>
                <p>

                    <bold>

                        <italic toggle="yes">3.1.2 Pharmacodynamic interactions with hERG</italic>
</bold>
                </p>
                <p>We identified 37 and 64 major pharmacodynamic interactions of TKIs with CV drugs in IBM Micromedex and 
                    <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>, respectively (
                    <xref ref-type="fig" rid="f1">Figures 1</xref> and 
                    <xref ref-type="fig" rid="f2">2</xref>). Computational studies have shown that cabozantinib (NB = &#x2212; 543.82), entrectinib (NB = -523.75), selpercatinib (NB = -521.97), ceritinib (NB = -484.40), osimeritinib (NB = -468.28), crizotinib (NB = -384.19), dabrafenib (NB = -382.66), gefitinib (NB = -448.05) and mobocertinib (NB = -447.48) have the maximum net binding scores to validate their binding affinity towards hERG. Although the net binding score of dabrafenib and crizotinib was not as high as that of the other TKIs, QT prolongation was reported in patients treated with these two TKIs (Represented in the Underlying dataset). The IFD results of individual CV drugs on hERG protein confirmed that telmisartan (NB = -1139.66), bisoprolol (NB = - 1309.66), nicardipine (NB = -1244.34), verapamil (NB = -1219.60), dabigatran (NB = -1016.93), dronedarone (NB = -1210.14), and amiodarone (NB = -1144.70) exhibited excellent binding interactions with hERG protein.</p>
                <p>The binding of different CV drugs, such as amlodipine (BE = -36.86), apixaban (BE = -44.57), diltiazem (BE = -53.69), bisoprolol (BE = -55.39), dofetilide (BE = -46.46), felodipine (BE = -45.84), labetalol (BE = -19.14), nifedipine (BE = -49.21), digoxigenin (BE = -42.69), verapamil (BE = -57.82), and oubain (BE = -40.54), was affected by the co-docking of hERG with TKIs, particularly ceritinib (
                    <xref ref-type="fig" rid="f5">Figure 5</xref>). The co-docked pose of crizotinib with telmisartan (BE = -61.64), propranolol (BE = -44.42), and fosinopril (BE = -41.79) also demonstrated synergistic interactions (
                    <xref ref-type="fig" rid="f6">Figure 6</xref>). According to literature, crizotinib is also associated with the occurrence of bradycardia. TKIs, such as entrectinib and lorlatinib, also exhibited synergistic interactions with CV drugs, including amiodarone, dronedarone, digoxigenin, proscillaridin, trandolapril, and felodipine. Entrectinib and lorlatinib have also been documented to cause QT prolongation and PR interval prolongation in the therapy timeframe. The synergistic interactions between TKIs and CV drugs may increase the likelihood of cardiac arrest and other cardiac disease symptoms, as indicated in the Underlying dataset.</p>
                <fig fig-type="figure" id="f5" orientation="portrait" position="float">
                    <label>
Figure 5. </label>
                    <caption>
                        <title>Binding mode of 3D interaction scheme at hERG binding site of ceritinib co-docked pose with (A) diltiazem, (B) dronedarone (C) propranolol and (D) apixaban.</title>
                    </caption>
                    <graphic id="gr5" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/178544/ac6a2f4b-58ab-4b10-b075-691b49249a75_figure5.gif"/>
                </fig>
                <fig fig-type="figure" id="f6" orientation="portrait" position="float">
                    <label>
Figure 6. </label>
                    <caption>
                        <title>Binding mode of 3D interaction scheme at hERG binding site of cabozantinib co-docked pose with (A) amiodarone, (B) apixaban, (C) dabigatran and (D) ticagrelor.</title>
                    </caption>
                    <graphic id="gr6" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/178544/ac6a2f4b-58ab-4b10-b075-691b49249a75_figure6.gif"/>
                </fig>
            </sec>
        </sec>
        <sec id="sec11" sec-type="discussion">
            <title>4. Discussion</title>
            <p>According to the reports, a significant proportion of individuals diagnosed with lung cancer are of advanced age, with approximately 60% of patients falling within this demographic. Furthermore, up to 80% of this elderly cohort exhibited comorbidities, including but not limited to CVD, neuropsychiatric disorders, respiratory disorders, digestive disorders, and arthritis. CVD is commonly linked to chronic inflammation, which explains the observed correlation between these two medical conditions, and a report has also indicated a statistically significant association between the incidence of CVD and lung cancer.
                <sup>
                    <xref ref-type="bibr" rid="ref31">31</xref>,
                    <xref ref-type="bibr" rid="ref32">32</xref>
                </sup> The observed trend can be primarily attributed to the significant and rapid increase in the number of oral anticancer therapies , specifically molecularly targeted treatments such as TKIs. According to the World Health Organization Drug Monitoring Centre&#x2019;s collection of spontaneous adverse reaction reports, TKIs and 10 CV drugs were identified in 348 reports and were found to be linked to QT prolongation.
                <sup>
                    <xref ref-type="bibr" rid="ref33">33</xref>
                </sup> According to Waters et.al (2015), the prevalence of CYP3A-mediated interaction potential with TKIs and concurrently administered medications was 47%, 22%, and 11% for substrates, inhibitors, and inducers, respectively.
                <sup>
                    <xref ref-type="bibr" rid="ref34">34</xref>
                </sup> A retrospective cross-sectional analysis of adult patients with lung cancer in the United States Veterans Affairs (VA) healthcare system was conducted by Sawsan Rashdan et al. in 2021 and it was observed that 5.3% of patients who were administered concomitant medications had prescriptions for drugs linked to major DDIs, while 55.9% of patients had potential DDIs.
                <sup>
                    <xref ref-type="bibr" rid="ref35">35</xref>
                </sup>
            </p>
            <p>Thus, chemotherapy for NSCLC is a multidimensional regimen designed to address comorbidities and toxicity-related symptoms. This may lead to complications owing to the potential occurrence of pharmacokinetic and pharmacodynamic DDIs. Therefore, assessment of potential DDIs occurring with NSCLC medications and CV drugs can provide preliminary knowledge for screening, identification, and management of DDIs in these comorbid conditions. The study utilized drug interaction checkers and published literature to anticipate potential pharmacokinetic interactions between TKIs and concurrently administered drugs. No studies on pharmacokinetic DDIs of TKI with CV medications have been reported to assess the severity of the interaction with NSCLC therapy. Hence, in this study, we thoroughly evaluated the prevalence and risk of pharmacokinetic and pharmacodynamic interactions and their severity using computational tools and softwares such as IBM Micromedex and Schr&#x00f6;dinger. Our study results revealed that the majority of pharmacokinetic/pharmacodynamic DDIs identified by IBM Micromedex were of major severity, whereas 
                <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link> had moderate severity. Synergistic inhibition/interference in the pathways of human PXR and hERG can give rise to both pharmacokinetic and pharmacodynamic interactions. Therefore, molecular docking studies assessed the docking scores and binding energy calculations in the binding pockets of both proteins for TKIs and CV drugs.</p>
            <p>The study revealed that the interaction between hERG protein and various TKIs was prominent in second- and third-generation TKIs, such as mobocertinib, dabrafenib, tepotinib, selpercatinib, brigatinib, cabozantinib, osimertinib, entrectinib, crizotinib, and afatinib. Ceretinib, crizotinib, and moboceritinib induce QT prolongation in patients. In contrast, crizotinib induced bradycardic symptoms and loralatinib prolonged the PR interval. In addition, gefitinib directly reported QT prolongation along with the involvement of hERG, validating the results of the molecular docking studies. hERG is also involved in a number of cellular processes, including apoptosis, angiogenesis, and cell proliferation Wan. et. al. (2020) also studied its involvement in cardiotoxicity and possible role as a therapeutic target in cancer physiology.
                <sup>
                    <xref ref-type="bibr" rid="ref36">36</xref>
                </sup> Occhipinti M et al. reported that statin use was negatively associated with progression free survival in Stage IV advanced NSCLC patients treated with EGFR-TKIs (
                <italic toggle="yes">p</italic> = 0.02; HR 0.281, 95% CI, 0.096&#x2013;0.825), suggesting a negative statin drug interaction with TKIs.
                <sup>
                    <xref ref-type="bibr" rid="ref37">37</xref>
                </sup>
            </p>
            <p>ACE inhibitors such as lisinopril and angiotensin II blockers, including telmisartan and olmesartan, as well as calcium channel blockers and &#x03b2;-blockers, are the primary CV drugs that interact with the hERG protein. These interactions are based on hydrophobic interactions and the net binding energy. In addition to the aforementioned drugs, dabigatran, dronedarone, and quinidine exhibited a significant affinity for the hERG protein. In 2005, Farid et al. conducted a study on the homo-tetrameric pore domain of hERG. This study aimed to investigate potential energy mapping and binding possibilities. The results showed that compounds containing hydrophobic groups, such as terfenadine, cisapride, sertindole, and ibutilide, exhibited strong binding properties. These findings suggested that the tetrameric ring may act as a strong binding pore.
                <sup>
                    <xref ref-type="bibr" rid="ref38">38</xref>
                </sup> Zhang et. al
                <italic toggle="yes">.</italic> (2016) established a study validating the interaction between amiodarone and hERG potassium channel blocker pore with mutagenesis and its in vitro IC
                <sub>50</sub> for the F656A mutation.
                <sup>
                    <xref ref-type="bibr" rid="ref39">39</xref>
                </sup> Additionally, Munawar 
                <italic toggle="yes">et.al.</italic> (2019) validated the involvement of potassium ions and water molecules in the hERG channel in the binding of the drug to the pore, which might be the possible reason for the difference in selectivity between drugs belonging to the same class.
                <sup>
                    <xref ref-type="bibr" rid="ref40">40</xref>
                </sup> Co-docking studies of TKIs revealed that ceritinib and cabozantinib were particularly susceptible to interactions with CV drugs including diltiazem, dronedarone, propranolol, apixaban, amiodarone, dabigatran, and ticagrelor. Concurrent use of TKIs in combination with calcium channel blockers, dual antiplatelet agents, and ACE II inhibitors may result in cardiac arrhythmia and increase the likelihood of QT interval prolongation. Studies have reported that certain drugs, including amiodarone, quinidine, sotalol, and dofetilide, are associated with an increased risk of QT interval prolongation.</p>
            <p>Several TKIs and CV drugs have been reported to increase QTc interval in patients.
                <sup>
                    <xref ref-type="bibr" rid="ref33">33</xref>,
                    <xref ref-type="bibr" rid="ref41">41</xref>,
                    <xref ref-type="bibr" rid="ref42">42</xref>
                </sup> There is an increased risk of developing DDIs among cancer patients receiving TKI drugs with the concomitant use of CV drugs.
                <sup>
                    <xref ref-type="bibr" rid="ref43">43</xref>,
                    <xref ref-type="bibr" rid="ref44">44</xref>
                </sup> Most pharmacodynamic DDIs identified in our study from IBM Micromedex were of major severity, whereas pharmacodynamic DDIs identified from 
                <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link> had a significant proportion of both major and moderate severity. It was evident from the results obtained from IBM Micromedex and 
                <ext-link ext-link-type="uri" xlink:href="http://drug.com">drug.com</ext-link> interactions checker that CV drugs such as amiodarone, dronedarone, quinidine, propranolol, and sotalol have shown potential for pharmacodynamic interactions (
                <xref ref-type="fig" rid="f1">Figures 1</xref> and 
                <xref ref-type="fig" rid="f2">2</xref>). The majority of drugs cause QTc interval prolongation by inhibition of the hERG subunit of the channel that conducts major ventricular repolarizing potassium current (IKr) during phases 2&#x2013;3 of the action potential.
                <sup>
                    <xref ref-type="bibr" rid="ref45">45</xref>,
                    <xref ref-type="bibr" rid="ref46">46</xref>
                </sup> In TKI-initiated cancer patients with concomitant CV drug intake, regular ECG monitoring is strongly recommended. Prospective studies evaluating QTc prolongation among cancer patients on the concomitant use of TKIs and CV drugs are needed to establish conclusive evidence.</p>
            <p>In 2014, Van Leeuwen et al. suggested that to enhance the secure administration of TKIs in clinical oncology, it is necessary to assess co-prescribed medications, herbal supplements, and dietary elements such as grapefruit juice, as well as cardiac risk factors and physical examination.
                <sup>
                    <xref ref-type="bibr" rid="ref47">47</xref>
                </sup> Several clinical studies, such as those conducted by Akbulut et al. (2022) and Amina Haouala et al. (2010), have also reported DDIs between CV and anticancer agents.
                <sup>
                    <xref ref-type="bibr" rid="ref43">43</xref>,
                    <xref ref-type="bibr" rid="ref48">48</xref>
                </sup> Owing to their extended usage and status as substrates of CYP450 and efflux transporters P-gp and BCRP, patients receiving TKIs are at an elevated risk for pharmacokinetic DDIs. TKIs used in the treatment of NSCLC, including ceritinib, afatinib, cabozantinib, and crizotinib, have also been identified as inhibitors of CYP3A4 and P-gp.
                <sup>
                    <xref ref-type="bibr" rid="ref49">49</xref>
                </sup> The results of the drug interaction checkers and molecular docking analyses indicated that these drugs have a high binding affinity to the ligand-binding domain of the PXR protein, evidenced by their high binding energies, as shown in 
                <xref ref-type="fig" rid="f2">Figure 2</xref> and 
                <xref ref-type="table" rid="T2">
Table 2</xref>. Similarly, it was evident from the results of the drug interaction checker softwares that CV drugs such as calcium channel blockers, &#x03b2;-blockers, anticoagulants, and angiotensin II blockers have the potential to cause major pharmacokinetic interactions and the potential to inhibit the PXR protein. The NB energies of these inhibitors ranged from -1500 to -2400 Kcal/mol. Calcium channel blockers and &#x03b2;-blockers are known for their ability to inhibit CYP3A4.
                <sup>
                    <xref ref-type="bibr" rid="ref50">50</xref>,
                    <xref ref-type="bibr" rid="ref51">51</xref>
                </sup> Concurrent use of these drugs may substantially increase the plasma concentration of TKIs. In a crossover study involving healthy volunteers, Teng et al. (2013) investigated the pharmacokinetic interactions between diltiazem and CYP3A4 substrates. The results of this study indicate that diltiazem significantly inhibits CYP3A4, resulting in pharmacokinetic DDIs.
                <sup>
                    <xref ref-type="bibr" rid="ref52">52</xref>
                </sup> Hukkanen et. al. (2015) also reported the inhibitory activity of atorvastatin on PXR protein, indicating the potential of statins as drugs for the occurrence of DDIs.
                <sup>
                    <xref ref-type="bibr" rid="ref53">53</xref>
                </sup>
            </p>
            <p>Information derived from both IBM Micromedex and 
                <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link> revealed that several pharmacokinetic DDIs between statins and TKIs of major and moderate severity were also identified in both the databases. The results of the binding energy calculations were also in the same line, where simvastatin (BE = -33.39), lovastatin (BE = -33.36), and pravastatin (BE = -41.66) showed prominent interactions with dabrafenib, ceritinib, crizotinib, larotrectinib, and lorlatinib. DDIs between these statins and TKIs were identified using both drug information databases. The drug information databases have identified several other antihypertensive drugs, including telmisartan, nifedipine, carvedilol, amlodipine, dabigatran, amiodarone, and felodipine, as drugs having major and moderate severity DDIs with TKIs. Computational assessments indicated that the drugs exhibited robust interactions with PXR both independently and when combined, as revealed through docking. Further research is necessary to determine the clinical significance of these DDIs. This research will help to establish conclusive evidence and develop guidelines for the identification, monitoring, and management of DDIs in clinics.</p>
        </sec>
        <sec id="sec12" sec-type="conclusion">
            <title>5. Conclusion</title>
            <p>The use of TKIs in the treatment of NSCLC, in conjunction with CV drugs, may result in various potential DDIs. These predictions were made using drug-drug interaction checkers and in silico molecular docking technique. The significance of a thorough treatment plan is highlighted, especially for patients undergoing treatment for NSCLC with other illnesses, such as CVD or cardiac toxicity caused by chemotherapy. Multidisciplinary treatment is administered to the patients diagnosed with NSCLC. The co-administration of TKIs that have the potential for QT prolongation or drugs that are inducers or inhibitors of CYP3A4 and P-gp with CV drugs, such as antiarrhythmic and antihypertensive drugs, may result in significant DDIs and adverse effects. The present study highlights the necessity for further well-planned investigations to validate the existing guidelines for the safe prescription and development of ideal chemotherapy regimens for patients. The utilization of medical tools, software, and computational methods is imperative to document all therapy-related interactions. Collaborative efforts between clinical oncologists, cardiologists, and pharmacists are also necessary to effectively identify drug interactions in patients with cancer. The resulting integrated dataset can then be utilized to develop a comprehensive surveillance strategy for monitoring, identifying, and managing DDIs during TKI therapy. This approach will lead to improved treatment outcomes, reduced healthcare costs, lower morbidity rates, and an overall improved quality of life for patients.</p>
        </sec>
        <sec id="sec13">
            <title>Author contributions</title>
            <p>

                <bold>Prajakta Harish Patil:</bold> Conceptualization of the study, collection of data, and writing of the manuscript. 
                <bold>Mrunal Pradeep Desai:</bold> Collection and interpretation of data. 
                <bold>Gayathri Baburaj:</bold> Collection and interpretation of data. 
                <bold>Levin Thomas:</bold> Collection and interpretation of data. 
                <bold>Viswam Subeesh:</bold> Collection and interpretation of data and review of the manuscript. 
                <bold>Sumit Birangal:</bold> Collection and interpretation of data. 
                <bold>Mahadev Rao:</bold> Data review and manuscript review. 
                <bold>Gurupur Gautham Shenoy:</bold> Interpretation of data, review of data, and review of manuscript. 
                <bold>Jagadish P. C.:</bold> Conceptualization of study, Review of data, Review of manuscript.</p>
        </sec>
    </body>
    <back>
        <sec id="sec17" sec-type="data-availability">
            <title>Data availability statement</title>
            <sec id="sec18">
                <title>Underlying data</title>
                <p>Figshare: Optimizing Cardiovascular Treatment in Non-Small Cell Lung Cancer: A Comprehensive Computational Approach for Assessment of Drug-Drug Interactions between Tyrosine Kinase Inhibitors and Cardiovascular Drugs, DOI: 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.28451273">https://doi.org/10.6084/m9.figshare.28451273</ext-link>.
                    <sup>
                        <xref ref-type="bibr" rid="ref54">54</xref>
                    </sup>
                </p>
                <p>This project contains the following underlying data:
                    <list list-type="bullet">
                        <list-item>
                            <label>&#x2022;</label>
                            <p>IBM Micromedex and 
                                <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link> with available reported literature: 
                                <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.28451273">https://doi.org/10.6084/m9.figshare.28451273</ext-link>

                                <list list-type="bullet">
                                    <list-item>
                                        <label>&#x25cb;</label>
                                        <p>
Figure 1</p>
                                    </list-item>
                                    <list-item>
                                        <label>&#x25cb;</label>
                                        <p>
Figure 2</p>
                                    </list-item>
                                    <list-item>
                                        <label>&#x25cb;</label>
                                        <p>Raw data_1_NSCLC_DDI_Literature
</p>
                                    </list-item>
                                </list>
                            </p>
                            <p>The above-mentioned dataset represents the literature related data and also the data retrieved from IBM Micromedex and 
                                <ext-link ext-link-type="uri" xlink:href="http://drugs.com">drugs.com</ext-link>
                            </p>
                            <p>Data are available under the terms of the 
                                <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International license</ext-link> (CC-BY 4.0).</p>
                        </list-item>
                    </list>
                </p>
            </sec>
            <sec id="sec19">
                <title>Extended data</title>
                <p>Figshare: Optimizing Cardiovascular Treatment in Non-Small Cell Lung Cancer: A Comprehensive Computational Approach for Assessment of Drug-Drug Interactions between Tyrosine Kinase Inhibitors and Cardiovascular Drugs, DOI: 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.28512680.v1">https://doi.org/10.6084/m9.figshare.28512680.v1</ext-link>.
                    <sup>
                        <xref ref-type="bibr" rid="ref55">55</xref>
                    </sup>
                </p>
                <p>The project contains the following extended data:
                    <list list-type="bullet">
                        <list-item>
                            <label>&#x2022;</label>
                            <p>F1000_Supplementary file 1_JPC</p>
                        </list-item>
                    </list>
                </p>
                <p>Data are available under the terms of the 
                    <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International license</ext-link> (CC-BY 4.0).</p>
            </sec>
        </sec>
        <sec id="sec14">
            <title>Software availability statement</title>
            <p>In this study, IBM Micromedex and Schr&#x00f6;dinger softwares were utilized for data analysis and molecular docking, respectively. IBM Micromedex is a paid subscription-based software accessible through the university. However, similar data can be obtained from 
                <ext-link ext-link-type="uri" xlink:href="http://Drugs.com">Drugs.com</ext-link>, which is a freely available resource. Schr&#x00f6;dinger was used for molecular docking and modelling. This is also a paid software. However, an open-source alternative, AutoDock, can be used for molecular modelling.</p>
        </sec>
        <ack>
            <title>Acknowledgment</title>
            <p>The authors would also like to thank AICTE-RPS and the Manipal-Schr&#x00f6;dinger Centre for Molecular Simulations, Manipal Academy of Higher Education, and Manipal College of Pharmaceutical Sciences, Manipal, for providing the necessary resources and facilities for this study. Prajakta Patil wishes to acknowledge ICMR for providing a junior research fellowship. Mrunal Pradeep Desai wishes to acknowledge financial support received from the Lady Tata Memorial Trust as a Junior research fellow.</p>
        </ack>
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    <sub-article article-type="reviewer-report" id="report388784">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.178544.r388784</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Mateti</surname>
                        <given-names>Uday Venkat</given-names>
                    </name>
                    <xref ref-type="aff" rid="r388784a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8149-2067</uri>
                </contrib>
                <aff id="r388784a1">
                    <label>1</label>NGSM Institute of Pharmaceutical Sciences (NGSMIPS), Nitte (Deemed to be University), Mangalore, Karnataka, India</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>7</day>
                <month>10</month>
                <year>2025</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2025 Mateti UV</copyright-statement>
                <copyright-year>2025</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport388784" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.162353.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>1. What is the rationale for choosing clinical DDI checkers (Micromedex &amp; Drugs.com)</p>
            <p> 2. What is the&#x00a0;rationale for choosing only PXR and hERG proteins?</p>
            <p> 3.&#x00a0;The method outlines MMGBSA binding energy calculations but does not define thresholds or benchmarks for classifying strong versus weak interactions, making interpretation potentially ambiguous.</p>
            <p> 4.&#x00a0;The conclusion should be made more concise by directly linking the key findings of predicted DDIs with their clinical implications, while briefly acknowledging the need for clinical validation and multidisciplinary management.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Patient Reported Outcomes and Cancer Research</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
        <sub-article article-type="response" id="comment14785-388784">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>P. C.</surname>
                            <given-names>Jagadish </given-names>
                        </name>
                        <aff>Pharmaceutical Chemistry, Manipal Academy of Higher Education, Manipal, Karnataka, India</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>The authors declare that there are no conflicts of interest associated with this publication.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>14</day>
                    <month>10</month>
                    <year>2025</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <bold>Dear Reviewer,</bold>
                </p>
                <p> Thank you for your insightful suggestions regarding our published manuscript entitled 
                    <italic>&#x201c;Optimizing Cardiovascular Treatment in Non-Small Cell Lung Cancer: A Comprehensive Computational Approach for Assessment of Drug-Drug Interactions between Tyrosine Kinase Inhibitors and Cardiovascular Drugs&#x201d;</italic> in F1000 Research. We have carefully revised the manuscript in accordance with your recommendations and corrections. We are confident that these improvements enhance the overall quality of the research. Respective changes have been modified and included in the revised version of the manuscript:</p>
                <p> </p>
                <p> 
                    <bold>
                        <underline>Response to comments </underline>
                    </bold>
                </p>
                <p> 
                    <bold>1. </bold>What is the rationale for choosing clinical DDI checkers (Micromedex &amp; Drugs.com)
                    <bold> </bold>
                </p>
                <p> 
                    <bold>Author Response: </bold>Dear Reviewer, thank you for your comment regarding the rationale behind selecting Micromedex and Drugs.com as DDI checkers. IBM Micromedex is a peer-reviewed, evidence-based DDI checker widely used in hospital settings for generating official drug interaction risk reports, which is also a subscription-based platform. In contrast, Drugs.com is a freely accessible online interface that reports interactions based on literature and possible common real-world screening practices among clinicians. By integrating both platforms, we aimed to confirm clinically relevant drug&#x2013;drug interactions through evidence-based sources as well as those frequently encountered in routine practices. This approach also enabled us to contextualize our molecular docking findings against known clinical interactions and explore mechanistic insights for unreported DDIs. The details of the same are outlined in the methodology section of the manuscript. (Page no. : 06-08)</p>
                <p> </p>
                <p> 
                    <bold>2. </bold>What is the rationale for choosing only PXR and hERG proteins?
                    <bold> </bold>
                </p>
                <p> 
                    <bold>Author Response: </bold>Dear Reviewer, the selection of the Pregnane X Receptor (PXR) and the human Ether-&#x00e0;-go-go-Related Gene (hERG) channel as molecular docking targets was driven by their central roles in the two most clinically significant classes of DDIs in cardio-oncology, i.e., pharmacokinetic (PK) and pharmacodynamic (PD) interaction risks, respectively. While PXR governs key metabolic pathways influencing PK interactions, hERG is critical for assessing PD-related cardiotoxicity. This focused approach ensured that our computational predictions remain directly aligned with clinically actionable risk assessment in NSCLC patients with cardiovascular comorbidities. The details of the same are outlined in the methodology section of the manuscript. (Page no. : 06-08)</p>
                <p> </p>
                <p> 
                    <bold>3. </bold>The method outlines MMGBSA binding energy calculations but does not define thresholds or benchmarks for classifying strong versus weak interactions, making interpretation potentially ambiguous.
                    <bold> </bold>
                </p>
                <p> 
                    <bold>Author Response: </bold>Dear Reviewer, in the current study, the MMGBSA binding energy, reported as Net Binding Energy, serves as an indicator of the thermodynamic favorability of drug-target interactions. Where a more negative (i.e., lower) MMGBSA value reflects a stronger and more favorable interaction, which in turn suggests a higher potential for DDI risk. This principle forms the basis for interpreting all subsequent binding data presented in the manuscript.</p>
                <p> </p>
                <p> 
                    <bold>4. </bold>The conclusion should be made more concise by directly linking the key findings of predicted DDIs with their clinical implications, while briefly acknowledging the need for clinical validation and multidisciplinary management.</p>
                <p> 
                    <bold>Author Response: </bold>Dear reviewer, thank you for the insightful suggestion. We have revised the conclusion section, acknowledging the need for clinical validation with a multidisciplinary patient care approach. (Page no: 17)</p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report374190">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.178544.r374190</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Nurkolis</surname>
                        <given-names>Fahrul</given-names>
                    </name>
                    <xref ref-type="aff" rid="r374190a1">1</xref>
                    <xref ref-type="aff" rid="r374190a2">2</xref>
                    <xref ref-type="aff" rid="r374190a3">3</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-2151-0854</uri>
                </contrib>
                <aff id="r374190a1">
                    <label>1</label>Pharmaceutical, Nutritional, Biomedical, and Translational Medicine, Medical Research Center of Indonesia, Surabaya, East Java, Indonesia</aff>
                <aff id="r374190a2">
                    <label>2</label>State Islamic University of Sunan Kalijaga, Yogyakarta, Yogyakarta, Indonesia</aff>
                <aff id="r374190a3">
                    <label>3</label>Master of Basic Medical Science, Faculty of Medicine, Airlangga University (Ringgold ID: 148005), Surabaya, East Java, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>26</day>
                <month>4</month>
                <year>2025</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2025 Nurkolis F</copyright-statement>
                <copyright-year>2025</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport374190" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.162353.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>I have reviewed the manuscript entitled "Optimizing Cardiovascular Treatment in Non-Small Cell Lung Cancer: A Comprehensive Computational Approach for Assessment of Drug-Drug Interactions between Tyrosine Kinase Inhibitors and Cardiovascular Drugs" by Patil et al. with great interest. However, this paper requires extensive revision before it can meet the standards for indexing by reputable scientific databases. Below are detailed suggestions for improving the manuscript: 
                <list list-type="order">
                    <list-item>
                        <p>
                            <bold>Inclusion of Molecular Dynamics Simulations</bold>: While molecular docking provides preliminary insights into interactions, the paper's current data should be complemented with Molecular Dynamics (MD) simulations. MD simulations would offer dynamic and temporal data on the stability of interactions identified by docking, providing deeper mechanistic insights and strengthening the manuscript's scientific rigor.</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Clarification of Drug Selection Rationale:&#x00a0;</bold>The authors need to provide a clear rationale for selecting specific cardiovascular drugs and tyrosine kinase inhibitors (TKIs). It is currently unclear why these particular drugs were chosen and why combinations with potentially more effective natural compounds or phytochemicals were not explored. Given the increasing interest and potential of natural compounds in therapeutic synergy, this oversight should be addressed explicitly.</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Extensive Proofreading for Grammar and Typographical Errors:&#x00a0;</bold>The manuscript contains several typographical and grammatical errors, which detract from readability and professionalism. For example, the term "GLOBACON" is incorrectly used in place of "GLOBOCAN".&#x00a0;It is strongly recommended that proofreading be done by a professional proofreading service. Correcting these issues is crucial for enhancing the manuscript's clarity and impact.</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Expansion of Clinical Relevance</bold>: While the computational data provided are robust, the manuscript would significantly benefit from discussions linking these computational predictions more explicitly to clinical contexts. A clearer interpretation of how these findings can practically influence treatment strategies or guidelines for clinicians managing NSCLC patients with cardiovascular comorbidities should be included.</p>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Enhancement of Figures and Tables Clarity</bold>: The manuscript would benefit from clearer and more informative visual presentations. Figures and tables must be revised to ensure that they can independently convey key results. Improved annotations, legends, and explanations for complex data in the visual elements will substantially enhance comprehensibility.</p>
                    </list-item>
                </list> In summary, addressing these major points will greatly enhance the manuscript&#x2019;s scientific depth and applicability, thereby improving its potential for indexing in reputable scientific databases.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Partly</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>No</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Molecular Biology, Pharmacoinformatics, In Silico, Drugs Discovery, Natural Product, Metabolic Syndrome and Anticancer</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment14784-374190">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>P. C.</surname>
                            <given-names>Jagadish </given-names>
                        </name>
                        <aff>Pharmaceutical Chemistry, Manipal Academy of Higher Education, Manipal, Karnataka, India</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>The authors declare that there are no conflicts of interest associated with this publication.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>14</day>
                    <month>10</month>
                    <year>2025</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <bold>Dear Reviewer,</bold>
                </p>
                <p> Thank you for your insightful suggestions regarding our published manuscript entitled 
                    <italic>&#x201c;Optimizing Cardiovascular Treatment in Non-Small Cell Lung Cancer: A Comprehensive Computational Approach for Assessment of Drug-Drug Interactions between Tyrosine Kinase Inhibitors and Cardiovascular Drugs&#x201d;</italic> to F1000 Research. We have carefully revised the manuscript in accordance with your recommendations and corrections. We are confident that these improvements enhance the overall quality of the research. Respective changes have been modified and included in the manuscript:</p>
                <p> 
                    <bold>
                        <underline>Response to comments </underline>
                    </bold>
                </p>
                <p> 
                    <bold>1. </bold>Inclusion of Molecular Dynamics Simulations: While molecular docking provides preliminary insights into interactions, the paper's current data should be complemented with Molecular Dynamics (MD) simulations. MD simulations would offer dynamic and temporal data on the stability of interactions identified by docking, providing deeper mechanistic insights and strengthening the manuscript's scientific rigor.
                    <bold> </bold>
                </p>
                <p> 
                    <bold>Author Response: </bold>Dear Reviewer, thank you for your thoughtful suggestion. We agree that integrating MD simulations would significantly enhance the understanding of the study by providing dynamic and temporal insights into drug&#x2013;protein interactions. However, due to the extensive computational resources and time required for a full MD study across the enormous number of drug combinations analyzed (22 TKIs and 76 CV drugs on both PXR and hERG), we view this essential investigation as a critical future scope of study. In future work, the study will be further continued to narrow down potential drug combinations (ceritinib&#x2013;nicardipine, cabozantinib&#x2013;verapamil, and brigatinib&#x2013;amiodarone), which will also be shortlisted for subsequent 
                    <bold>in vitro</bold> and MD studies.</p>
                <p> </p>
                <p> 
                    <bold>2. </bold>Clarification of Drug Selection Rationale: The authors need to provide a clear rationale for selecting specific cardiovascular drugs and tyrosine kinase inhibitors (TKIs). It is currently unclear why these particular drugs were chosen and why combinations with potentially more effective natural compounds or phytochemicals were not explored. Given the increasing interest and potential of natural compounds in therapeutic synergy, this oversight should be addressed explicitly.</p>
                <p> 
                    <bold>Author Response: </bold>Dear reviewer, thank you for the valuable suggestion. The selection of drugs in our study was guided by clinical relevance, with the aim of providing immediate insights. We focused exclusively on agents that are currently being used as standard of care, i.e., tyrosine kinase inhibitors (TKIs), which were chosen based on NCCN and FDA-approved treatments for NSCLC, while cardiovascular drugs were selected according to ESMO guidelines for managing cardiovascular comorbidities in oncology settings, as detailed in the methodology section (Davis, 2025). At present, natural compounds fall beyond the scope of this study, but we recognize their potential and will consider them as a promising direction for future research. (Page no. 06)</p>
                <p> </p>
                <p> 
                    <bold>3. </bold>Extensive Proofreading for Grammar and Typographical Errors: The manuscript contains several typographical and grammatical errors, which detract from readability and professionalism. For example, the term "GLOBACON" is incorrectly used in place of "GLOBOCAN". It is strongly recommended that proofreading be done by a professional proofreading service. Correcting these issues is crucial for enhancing the manuscript's clarity and impact.
                    <bold> </bold>
                </p>
                <p> 
                    <bold>Author Response: </bold>Respected reviewer, thank you for highlighting the typographical and grammatical issues in the manuscript. We sincerely apologize for these oversights. The manuscript has now undergone thorough proofreading to correct such errors and improve overall clarity.</p>
                <p> </p>
                <p> 
                    <bold>4. </bold>Expansion of Clinical Relevance: While the computational data provided are robust, the manuscript would significantly benefit from discussions linking these computational predictions more explicitly to clinical contexts. A clearer interpretation of how these findings can practically influence treatment strategies or guidelines for clinicians managing NSCLC patients with cardiovascular comorbidities should be included.
                    <bold> </bold>
                </p>
                <p> 
                    <bold>Author Response: </bold>Dear reviewer, thank you for emphasizing the importance of clinical relevance. We agree that bridging computational predictions with practical clinical applications is essential for translational impact. Accordingly, we have modified the discussion section with relevant citations to correlate how our findings may inform treatment strategies for NSCLC patients with cardiovascular comorbidities. (Page no: 13-15, 17)</p>
                <p> </p>
                <p> 
                    <bold>5.</bold>Enhancement of Figures and Tables Clarity: The manuscript would benefit from clearer and more informative visual presentations. Figures and tables must be revised to ensure that they can independently convey key results. Improved annotations, legends, and explanations for complex data in the visual elements will substantially enhance comprehensibility.</p>
                <p> 
                    <bold>Author Response: </bold>Dear Reviewer, thank you for the suggestion. We have revised all figures to improve clarity, and high-resolution versions have been uploaded with the revised manuscript.</p>
            </body>
        </sub-article>
    </sub-article>
</article>
