<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="methods-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.163596.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Method Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Methodology for generating chorioallantoic membrane patient-derived xenograft (CAM-PDX) models of pleural mesothelioma and performing preclinical imaging for the translation of cancer studies and drug screening.</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Schulze</surname>
                        <given-names>Jan</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Barnett</surname>
                        <given-names>Sarah</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-3470-7528</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Shaw</surname>
                        <given-names>Liam</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Herrmann</surname>
                        <given-names>Anne</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Poptani</surname>
                        <given-names>Harish</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Rassl</surname>
                        <given-names>Doris M</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Haragan</surname>
                        <given-names>Alexander</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a5">5</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Shackcloth</surname>
                        <given-names>Michael</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-6494-9907</uri>
                    <xref ref-type="aff" rid="a6">6</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Sacco</surname>
                        <given-names>Joseph J</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-2591-9796</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a7">7</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Coulson</surname>
                        <given-names>Judy M</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-2191-2001</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Molecular and Clinical Cancer Medicine, University of Liverpool Institute of Systems Molecular and Integrative Biology, Liverpool, England, UK</aff>
                <aff id="a2">
                    <label>2</label>Egg Facility, Liverpool Shared Research Facilities, University of Liverpool Faculty of Health and Life Sciences, Liverpool, England, UK</aff>
                <aff id="a3">
                    <label>3</label>Centre for Preclinical Imaging, Liverpool Shared Research Facilities, University of Liverpool Faculty of Health and Life Sciences, Liverpool, England, UK</aff>
                <aff id="a4">
                    <label>4</label>Royal Papworth Hospital NHS Foundation Trust, Cambridge, England, UK</aff>
                <aff id="a5">
                    <label>5</label>Pathology Department, Royal Liverpool University Hospital, Liverpool, England, UK</aff>
                <aff id="a6">
                    <label>6</label>Liverpool Heart and Chest Hospital NHS Foundation Trust, Liverpool, England, UK</aff>
                <aff id="a7">
                    <label>7</label>Clatterbridge Cancer Centre NHS Foundation Trust, Bebington, England, UK</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:sarah.barnett@liverpool.ac.uk">sarah.barnett@liverpool.ac.uk</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>SEB is the facility manager and JMC is the academic lead of the Egg Facility. HP is the academic lead of the Centre for Preclinical Imaging. Both facilities operate on a cost-recovery basis managed by Liverpool Shared Research Facilities (LIV-SRF)</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>7</day>
                <month>5</month>
                <year>2025</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2025</year>
            </pub-date>
            <volume>14</volume>
            <elocation-id>481</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>29</day>
                    <month>4</month>
                    <year>2025</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2025 Schulze J et al.</copyright-statement>
                <copyright-year>2025</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/14-481/pdf"/>
            <abstract>
                <sec>
                    <title>Background</title>
                    <p>Pleural mesothelioma is a cancer of the lung lining associated with asbestos exposure. Platinum/pemetrexed chemotherapy has been used for many years but provides little benefit and, despite recent immunotherapy advances, prognosis remains poor underpinning the need for development of novel therapeutics or drug repurposing. Fertilized hens&#x2019; eggs provide a rapid and cost-effective alternative to murine models of pleural mesothelioma which are commonly used in preclinical studies, with chorioallantoic membrane (CAM) xenografts being a partial replacement for mouse flank xenografts. Here we describe methods to generate mesothelioma patient-derived xenografts on the CAM (CAM-PDX), and to subsequently assess these PDX nodules by preclinical imaging and histology.</p>
                </sec>
                <sec>
                    <title>Methods</title>
                    <p>Fragments of surplus mesothelioma tissue obtained from patient biopsies were implanted onto the CAM on embryonic day 7 (E7), fresh or following cryopreservation, with the established PDX dissected on E14 and fixed for histological/immunohistochemical analysis. The optimal freezing method was determined by comparing tissue integrity and cellular content of cryopreserved tissue fragments with paired fresh samples via histological/immunohistochemical analyses. [
                        <sup>18</sup>F]-fluorodeoxyglucose positron emission tomography/computed tomography (FDG-PET/CT) was used to assess viability of PDXs 
                        <italic toggle="yes">in ovo.</italic>
                    </p>
                </sec>
                <sec>
                    <title>Results</title>
                    <p>Methodologies for processing, cryopreservation, re-animation, and engraftment of mesothelioma tissue fragments were established. Cryopreservation of biopsy samples and parallel processing of contiguous sections allows for assessment of mesothelioma cellularity. CAM-PDXs, generated from fresh or slow-frozen tissue, were well vascularized whilst maintaining the architecture and cellular composition of the patient tissue. Furthermore, uptake of [
                        <sup>18</sup>F]-FDG following intravenous injection could be visualized and quantified.</p>
                </sec>
                <sec>
                    <title>Conclusions</title>
                    <p>The CAM is a rapid platform for engrafting patient-derived tissue, maintaining elements of the tumor microenvironment and recapitulating heterogeneity observed in mesothelioma. Combining the CAM-PDX model and FDG-PET/CT provides a quantitative 
                        <italic toggle="yes">in vivo</italic> platform for pre-screening of novel treatment strategies and drug combinations, with the potential for development of patient tumor avatars for predicting clinical response.</p>
                </sec>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Chorioallantoic membrane</kwd>
                <kwd>PDX</kwd>
                <kwd>pleural mesothelioma</kwd>
                <kwd>3Rs</kwd>
                <kwd>preclinical model</kwd>
                <kwd>PET/CT imaging</kwd>
                <kwd>histology</kwd>
                <kwd>immunohistochemistry</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1" xlink:href="https://doi.org/10.13039/501100010757">
                    <funding-source>National Centre for the Replacement Refinement and Reduction of Animals in Research</funding-source>
                    <award-id>NC/T001631/1</award-id>
                </award-group>
                <award-group id="fund-2" xlink:href="https://doi.org/10.13039/501100000357">
                    <funding-source>North West Cancer Research</funding-source>
                    <award-id>TR2021.15</award-id>
                </award-group>
                <funding-statement>This research was funded by a NC3Rs (National Centre for the Replacement, Refinement &amp; Reduction of Animals in Research) project grant, reference NC/T001631/1, and a North West Cancer Research project grant, reference TR2021.15.</funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec>
            <title/>
            <p>

                <boxed-text id="B2" orientation="portrait" position="float">
                    <label>Research highlights</label>
                    <p>

                        <bold>Scientific benefit(s)</bold>
                    </p>
                    <p>

                        <list list-type="bullet">
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Alternative preclinical model for translation of 
                                    <italic toggle="yes">in vitro</italic> studies
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Tissue processing pipeline maximizes tumor cell content for efficient patient-derived model generation from mesothelioma biopsies
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Maintains tissue architecture and tumor microenvironment with host-derived vascularization
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Host-derived vascularization enables systemic drug delivery and radiotracer administration to monitor viability</p>
                            </list-item>
                        </list>
                    </p>
                    <p>

                        <bold>3Rs benefit(s)</bold>
                    </p>
                    <p>

                        <list list-type="bullet">
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Direct replacement for mouse PDX models
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>The chick embryo model can be used as a pre-screening platform before moving into protected mammalian models (reduction)
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Facilitates drug testing without, or minimizing, the use of mammalian models</p>
                            </list-item>
                        </list>
                    </p>
                    <p>

                        <bold>Practical benefit(s)</bold>
                    </p>
                    <p>

                        <list list-type="bullet">
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Scalable, low cost and rapid preclinical model
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Facilitates 
                                    <italic toggle="yes">in vivo</italic> preclinical testing in a higher throughput manner than mammalian models
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Brings together scientific and clinical teams
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Amenable to repurposing of small animal imaging modalities</p>
                            </list-item>
                        </list>
                    </p>
                    <p>

                        <bold>Current applications</bold>
                    </p>
                    <p>

                        <list list-type="bullet">
                            <list-item>
                                <label>&#x2022;</label>
                                <p>In our lab, the CAM-PDX model in combination with PET/CT imaging is being utilized for the assessment of novel drug combinations and therapeutic strategies for improved treatment responses in mesothelioma</p>
                            </list-item>
                        </list>
                    </p>
                    <p>

                        <bold>Potential applications</bold>
                    </p>
                    <p>

                        <list list-type="bullet">
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Preclinical screening for novel drug combinations and therapeutic strategies, patient stratification and repurposing of drugs for other cancers
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Preclinical evaluation of patient suitability for clinical trials
</p>
                            </list-item>
                            <list-item>
                                <label>&#x2022;</label>
                                <p>Development of rapid real-time treatment response (patient tumor avatars)
</p>
                            </list-item>
                        </list>
                    </p>
                </boxed-text>
            </p>
        </sec>
        <sec id="sec11" sec-type="intro">
            <title>Introduction</title>
            <p>Pleural mesothelioma is a cancer of the lining of the lungs that is predominantly caused by asbestos exposure. Most cases can be histologically classified as either epithelioid, sarcomatoid or biphasic (
                <xref ref-type="bibr" rid="ref1">Lokuhetty 
                    <italic toggle="yes">et al.</italic>, 2021</xref>), with loss of tumor suppressors being a common genetic feature. For example, loss or inactivation of the nuclear deubiquitylase BRAC1-associated protein (BAP1) is found in 60-70% of cases and is most frequent in the epithelioid subtype (
                <xref ref-type="bibr" rid="ref2">Bott 
                    <italic toggle="yes">et al.</italic>, 2011</xref>). Despite the recent approval of immunotherapy for untreated mesothelioma (
                <xref ref-type="bibr" rid="ref3">Baas 
                    <italic toggle="yes">et al.</italic>, 2021</xref>), pleural mesothelioma remains an incurable disease with poor prognosis. There is, therefore, still a pressing need for new therapies, and consequently the requirement for drug screening and preclinical testing. Typically, rodent models would be used for such studies; however, these models are costly, labor-intensive to maintain, take months to produce results (
                <xref ref-type="bibr" rid="ref4">Reyal 
                    <italic toggle="yes">et al.</italic>, 2012</xref>), and there is a growing demand to reduce the use of protected animals in research. Despite a declining trend in the use of mice since 2007, they remain a commonly used model with 60% of all animal experiments in 2023 being conducted in this species, which equates to around 0.9 million mice in the UK alone (
                <xref ref-type="bibr" rid="ref5">Baxter, 2024</xref>). Around one-fifth of these animals were used for either basic or translational research of human cancer and 40% of all mouse experiments involved non-genetically modified models (
                <xref ref-type="bibr" rid="ref5">Baxter, 2024</xref>), such as xenografts. If a fraction of these were replaced with non-mammalian models it would save thousands of mice per year.</p>
            <p>The extra-embryonic chorioallantoic membrane (CAM) of fertilized hens&#x2019; eggs can be used to generate cancer xenografts for the translation of 
                <italic toggle="yes">in vitro</italic> cancer studies. The CAM model has multiple benefits; being cheaper and having fewer husbandry requirements compared to mammalian models. It is also an attractive option as avian embryos are non-protected up to two thirds gestation, with pain perception only becoming functional from E15 onwards in chickens (
                <xref ref-type="bibr" rid="ref6">S&#x00fc;&#x00df; 
                    <italic toggle="yes">et al.</italic>, 2023</xref>), and so they do not fall under Home Office regulations up to embryonic day 14 (E14) in the UK. Thus, the CAM is both more ethical and simpler for researchers to adopt as an 
                <italic toggle="yes">in vivo</italic> model than mice. This 3Rs-compliant model has been successfully employed to study the key hallmarks of cancer, and for evaluation of new therapeutics, and thus can significantly contribute to reducing or replacing use of rodent models in cancer research (
                <xref ref-type="bibr" rid="ref7">Schneider-Stock and Ribatti, 2021</xref>).</p>
            <p>We have previously shown the utility of the CAM model for the generation of mesothelioma cell line xenografts (
                <xref ref-type="bibr" rid="ref8">Barnett 
                    <italic toggle="yes">et al.</italic>, 2022</xref>). While cell lines are a tractable option and are useful for optimizing protocols and experimental workflows, patient-derived models are more representative. The recent development of a breadth of 
                <italic toggle="yes">in vitro</italic> patient-derived models for mesothelioma, such as organoids (
                <xref ref-type="bibr" rid="ref9">Shamseddin 
                    <italic toggle="yes">et al.</italic>, 2021</xref>) and explants (
                <xref ref-type="bibr" rid="ref10">Powley 
                    <italic toggle="yes">et al.</italic>, 2020</xref>), is important for driving forward mesothelioma research. However, the choice of model should be carefully considered. For instance, patient-derived organoids (PDO) lose the original tissue architecture and cellular composition, whereas both patient-derived explants (PDE) and patient-derived xenografts (PDX) retain these features. Since mesothelioma is a highly fibrotic cancer, with stromal and immune cells influencing tumor progression, maintaining the tumor microenvironment is particularly important to ensure a more representative treatment response (
                <xref ref-type="bibr" rid="ref11">Chrisochoidou 
                    <italic toggle="yes">et al.</italic>, 2023</xref>). Furthermore, a key benefit of CAM xenografts over both explants and organoids is the vascularization of tumor nodules, which maintains viability, whereas explants frequently become necrotic. This vascularization also enables systemic delivery of therapies and reagents through chick-derived blood vessels, via intravenous or yolk-sac injection, thus offering a more physiologically relevant means of treatment administration.</p>
            <p>Although, several mouse models of mesothelioma have been developed including asbestos-induced (
                <xref ref-type="bibr" rid="ref12">Grosso 
                    <italic toggle="yes">et al.</italic>, 2021</xref>), conditional genetic knockouts (
                <xref ref-type="bibr" rid="ref13">Kukuyan 
                    <italic toggle="yes">et al.</italic>, 2019</xref>) and, of most relevance here, xenograft or PDX models (
                <xref ref-type="bibr" rid="ref14">Wu 
                    <italic toggle="yes">et al.</italic>, 2017</xref>), these can manifest severe phenotypes. As well as ethical considerations, establishing PDXs in mice can be difficult, with a take rate of only 40-50% in some cases (
                <xref ref-type="bibr" rid="ref15">Boughey 
                    <italic toggle="yes">et al.</italic>, 2021</xref>) and mesothelioma is no exception (
                <xref ref-type="bibr" rid="ref14">Wu 
                    <italic toggle="yes">et al.</italic>, 2017</xref>). Furthermore, generating mouse PDX models can take several months, with reports of 2-8 months for first generation engraftment in breast cancer for example (
                <xref ref-type="bibr" rid="ref4">Reyal 
                    <italic toggle="yes">et al.</italic>, 2012</xref>). Thus, for applications such as patient avatars, this may be futile in mesothelioma where median survival is 12-21 months, and only 7 months for the sarcomatoid subtype (
                <xref ref-type="bibr" rid="ref16">Amin 
                    <italic toggle="yes">et al.</italic>, 2018</xref>). The CAM xenograft assay can be considered as a direct replacement for mouse xenograft flank models and has been tested as a PDX platform for a variety of other cancer types such as glioblastoma (
                <xref ref-type="bibr" rid="ref17">Shoin 
                    <italic toggle="yes">et al.</italic>, 1991</xref>), clear cell renal cell carcinoma (
                <xref ref-type="bibr" rid="ref18">Fergelot 
                    <italic toggle="yes">et al.</italic>, 2013</xref>), as well as one publication reporting use of mesothelioma tissue (
                <xref ref-type="bibr" rid="ref19">M&#x00ee;ndril&#x0103; 
                    <italic toggle="yes">et al.</italic>, 2017</xref>). Published studies report high engraftment rates (70-80%), histological concordance with tumor type and a strong correlation between CAM-PDX assay results and patient outcome (
                <xref ref-type="bibr" rid="ref17">Shoin 
                    <italic toggle="yes">et al.</italic>, 1991</xref>, 
                <xref ref-type="bibr" rid="ref20">DeBord 
                    <italic toggle="yes">et al.</italic>, 2018</xref>, 
                <xref ref-type="bibr" rid="ref21">Charbonneau 
                    <italic toggle="yes">et al.</italic>, 2023</xref>), supporting the CAM model as an alternative method for generating physiologically applicable PDXs that can be utilized for drug screening and personalized medicine.</p>
            <p>PET/CT is routinely used in the clinic for detection and staging of cancer, mesothelioma included, as well as monitoring of treatment response in patients (
                <xref ref-type="bibr" rid="ref22">Kruse 
                    <italic toggle="yes">et al.</italic>, 2013</xref>). Moreover, since mesothelioma has a large stromal compartment, an imaging technique that selectively reports on cancer cell metabolism as a surrogate marker for viability may be more informative of treatment response than standard readouts such as tumor weight. Additionally, as others have previously demonstrated the feasibility of applying PET/CT imaging to cell line-derived CAM xenografts this was our modality of choice (
                <xref ref-type="bibr" rid="ref23">Warnock 
                    <italic toggle="yes">et al.</italic>, 2013</xref>, 
                <xref ref-type="bibr" rid="ref24">Smith 
                    <italic toggle="yes">et al.</italic>, 2023</xref>, 
                <xref ref-type="bibr" rid="ref25">Schulze 
                    <italic toggle="yes">et al.</italic>, 2023a</xref>). Hence, we developed a workflow to combine CAM-PDX and PET/CT imaging to facilitate assessment of treatment response in this model.</p>
            <p>To make this approach accessible to other laboratories as a replacement for mouse PDXs, our aim was to develop robust protocols that describe in detail how to generate CAM-PDX models of mesothelioma and monitor tumor cell composition and health to assess therapeutic responses. Our specific objectives were to: (1) Optimize a pipeline for processing, characterization and cryopreservation of biopsy samples to ensure availability of high-quality tissue for engraftment; (2) Demonstrate robust engraftment of tissue, and preservation of architecture and cellular composition in PDX nodules; and (3) Apply 
                <italic toggle="yes">in ovo</italic> [
                <sup>18</sup>F]-FDG PET/CT imaging to measure cancer cell metabolism within PDX nodules. These CAM-PDX methods can be extrapolated to other tumor types, and the tissue processing method could be applied to the generation of PDEs, or even mouse PDX models, to increase experimental efficiency thus having a wider impact across models.</p>
        </sec>
        <sec id="sec12">
            <title>Materials</title>
            <p>Supplier information and catalogue numbers for reagents, consumables and equipment are detailed in 
                <xref ref-type="table" rid="T1">
Table 1</xref>.</p>
            <table-wrap id="T1" orientation="portrait" position="float">
                <label>
Table 1. </label>
                <caption>
                    <title>Materials used.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Item</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">
Brand/Supplier</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Catalogue number (Batch Number)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">10% Neutral buffered formalin (NBF)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Sigma</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">HT501128-4L (Lot MKCG3336)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Epredia&#x2122; Cassette II Biopsy Tissue Cassettes</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">16324136</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Ethanol</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">From university chemistry department</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Xylene (processor)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">10385910</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Surgipath formula R paraffin wax</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3801470</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MX35 Ultra microtrome blades (3053835)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">SLS</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">HIS3050</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Superfrost plus adhesion slides</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">VWR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">631-9483</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Harris Hematoxylin (H&amp;E autostainer)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3801560BBE</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Eosin Y (H&amp;E autostainer)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3801600BBE</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Pertex mounting media (Histology coverslipper)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3808706E</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2450-1.0 Micro Coverglass (Histology coverslipper)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3800145G</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BOND Dewax Solution</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">AR9222</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BOND Wash Solution</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">AR9590</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BOND Epitope Retrieval Solution 2</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">AR9640</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BOND Primary Antibody diluent</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">AR9352</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BOND Polymer Refine Detection Kit

                                <break/>

                                <p>

                                    <list list-type="bullet">
                                        <list-item>
                                            <label>-</label>
                                            <p>Peroxide Block (30 mL) 3&#x2013;4% (v/v) Hydrogen peroxide</p>
                                        </list-item>
                                        <list-item>
                                            <label>-</label>
                                            <p>Post Primary (30 mL) Rabbit anti mouse IgG (&lt;10 &#x03bc;g/mL) in 10% (v/v) animal serum in tris-buffered saline/0.1% ProClin&#x2122; 950</p>
                                        </list-item>
                                        <list-item>
                                            <label>-</label>
                                            <p>Polymer (30 mL) Anti-rabbit Poly-HRP-IgG (&lt;25 &#x03bc;g/mL) containing 10% (v/v) animal serum in tris-buffered saline/0.1% ProClin&#x2122; 950</p>
                                        </list-item>
                                        <list-item>
                                            <label>-</label>
                                            <p>DAB Part 1 (2.4 mL) 66 mM 3,3&#x2019;-Diaminobenzidine tetrahydrochloride hydrate, in a stabilizer solution</p>
                                        </list-item>
                                        <list-item>
                                            <label>-</label>
                                            <p>DAB Part B (30 mL) &#x2264;0.1% (v/v) Hydrogen Peroxide in a stabilizer solution</p>
                                        </list-item>
                                        <list-item>
                                            <label>-</label>
                                            <p>Hematoxylin (30 mL) &lt;0.1% Hematoxylin</p>
                                        </list-item>
                                    </list>
                                </p>
</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Leica</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">DS9800</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Xylene (Immunohistochemistry)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">VWR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">28975.325</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">DPX mountant for histology (Immunohistochemistry)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Sigma</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">#06522</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">22 &#x00d7; 50 mm glass coverslips - thickness #1</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">VWR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">6310137</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2ml cryovials</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corning</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">430488</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Mr. Frosty&#x2122; Freezing Container</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Thermo Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5100-0001</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">No.11 Disposable scalpels</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Swann Morton</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">#0503</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Gibco10X Dulbecco's phosphate-buffered saline</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Thermo Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">70011036</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Fetal Bovine Serum (FBS)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Gibco</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">10437-028 (Lot 2405703RP)
                                <break/>A5256701 (Lot 2575628)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">RPMI 1640 Glutamax</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Gibco</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">61870-010 (Lot 2436534)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Dimethyl sulfoxide (DMSO)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Sigma</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">D8418</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Gibco 100X Penicillin-Streptomycin (10000 U/mL)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">11548876</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1.5 mL TubeOne Microcentrifuge Tube</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Starlab</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">S1615-5500</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corning 50 mL non-skirted Tubes</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Appleton Woods</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BC034</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">10cm plates</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Starlab</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">CC7682-3394</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Corning 35 mm untreated cell culture dishes</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Appleton Woods</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BC146</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Egg chiller</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Haier</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">WS46GDBE</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Brinsea OvaEasy 380 Advance EX Series II Automatic Egg Incubator</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Brinsea</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">MJ3833A</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Brinsea Disinfectant</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Brinsea</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">14.35</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Egg piercer</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Amazon</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">B09VYQHCMV</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Scotch Magic Tape 810 Solvent-Free Transparent 25mmx66m</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Banner</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3913933</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Orange Labeling Tape (0.5 inch-wide x 500 inch)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">SLS</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">TAP1088</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Needles 20g 1inch (0.9x25mm)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">VWR</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">613-5391</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">5mL syringe without needle 6% leur (SS05SE)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">SLS</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">SYR6204</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Lens cleaning tissue (Lens tissue)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">10166284</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Portex Tubing medical and surgical PVC 4mm diameter</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Fisher Scientific</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">13130863</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Kimtech precision wipes</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Kimberley Clark</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">7552</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Meso-relle 33Gx1/2&#x201d; 0.2x12mm needle</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">UKMEDI</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">AM33G</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BD - PlastiPak Luer Slip Syringe without Needle 1 mL</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">BD</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">303172</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">NaCl 0.9% (0.9% w/v Sodium Chloride Injection BP)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">B.Braun</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2350756</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
        </sec>
        <sec id="sec13" sec-type="methods">
            <title>Methods</title>
            <sec id="sec14">
                <title>Patient biopsy tissue processing and cryopreservation</title>
                <p>

                    <bold>Sample collection</bold>
                </p>
                <p>Fresh surplus biopsy tissue samples were donated under written informed consent from treatment-na&#x00ef;ve patients undergoing diagnostic percutaneous biopsies at NHS Liverpool Heart and Chest Hospital Teaching Hospitals between March 2021 and November 2024. All specimen collection was conducted under the approved ethics (East of England &#x2013; Cambridge Central Research Ethics Committee; approved 9
                    <sup>th</sup> August 2019, 18/EE/0161; renewed 30
                    <sup>th</sup> August 2023, 23/EE/0139) for the mesothelioma biobank, Mesobank UK (
                    <xref ref-type="bibr" rid="ref26">Rintoul 
                        <italic toggle="yes">et al.</italic>, 2016</xref>). Samples were immediately placed into a 50 mL centrifuge tube containing 25 mL RPMI 1640 Glutamax (Thermo Fisher Scientific, MA, USA) supplemented with 1% penicillin-streptomycin (Fisher Scientific, NH, USA) and kept on ice. Samples were assigned a unique Mesobank sample identifier and transferred on ice to the research laboratory (University of Liverpool) within 30 minutes. All experiments were conducted according to the Declaration of Helsinki and in compliance with all local policies and standard operating procedures for working with human material.</p>
                <p>

                    <bold>Preparation of tissue samples for implantation, freezing or fixation for histology</bold>
                </p>
                <p>All work with human tissue was carried out in a ESCO Airstream class II biosafety cabinet (ESCO Lifesciences Group, Singapore) and all equipment (10 cm dishes, tweezers, scalpel) were sterilized via ultraviolet (UV) light prior to collecting the sample. Immediately upon arrival at the lab, the contents of the 50 ml tube were transferred into a 10 cm plate (Starlab, UK). The sample was then immediately cut into 1 mm
                    <sup>3</sup> fragments with a scalpel (Swann Morton, UK) according to the diagram in 
                    <xref ref-type="fig" rid="f1">
Figure 1</xref>. Tissue pieces were kept in transport media to prevent the tissue drying out.</p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>
Figure 1. </label>
                    <caption>
                        <title>Preparation of patient tissue for parallel histological assessment and cryopreservation.</title>
                        <p>A, Workflow diagram of how tissue was processed. Figure created in Adobe Illustrator 2025 (Version 29.4 (64-bit), RRID:SCR_010279). B, Series of photographs showing tissue preparation. Pleural biopsy tissue (Bi) cut into different regions (Bii). A single region (Biii) cut into three equally sized sections (Biv). The middle section (purple box, &#x201c;fresh-fixed&#x201d;) was fixed in 10% NBF and the outer sections were cut into 1 mm
                            <sup>3</sup> fragments (Bv) and slow-frozen in either high FBS or low FBS cryopreservation media (
                            <xref ref-type="table" rid="T2">
Table 2</xref>). One piece from each section (blue box) served as a control for the freezing process.</p>
                    </caption>
                    <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure1.gif"/>
                </fig>
                <p>

                    <bold>Cryopreservation of tissue</bold>
                </p>
                <p>Two milliliter cryovials (Corning, NY, USA) were prepared with 1 mL freezing media (
                    <xref ref-type="table" rid="T2">
Table 2</xref>) immediately prior to collection of samples, or ahead of time and frozen at -20&#x00b0;C. Using tweezers, a maximum of up to five 1 mm
                    <sup>3</sup> fragments were transferred into one cryovial (
                    <xref ref-type="fig" rid="f1">
Figure 1</xref>). Vials were placed into a Mr. Frosty freezing container (Thermo Scientific; MA, USA) and transferred to a -80&#x00b0;C freezer (Sanyo Electric Company Ltd., Japan) as quickly as possible. Samples were then transferred to liquid nitrogen (vapor phase) for long-term storage within a week of processing.</p>
                <table-wrap id="T2" orientation="portrait" position="float">
                    <label>
Table 2. </label>
                    <caption>
                        <title>Freezing media components (% v/v).</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Component</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">High FBS</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
Low FBS</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">RPMI 1640 Glutamax</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">80</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Fetal Bovine Serum (FBS)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">90</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Dimethyl sulfoxide (DMSO)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>

                    <bold>Reanimation of cryopreserved tissue</bold>
                </p>
                <p>Frozen vials were transported on dry ice and placed in a water bath (Grant Instruments Ltd, UK) at 37&#x00b0;C for 30-60 seconds. Vials were agitated until the contents had thawed, ensuring all ice crystals had melted. The contents of the cryovial were poured into a 10 cm plate, ensuring no fragments were stuck in the tube. The tissue fragments were thoroughly rinsed to remove all cryoprotectant solvent by adding 5 ml of sterile Dulbecco&#x2019;s phosphate-buffered saline (PBS; Thermo Scientific) to the dish and aspirating carefully. This was repeated two times prior to proceeding with CAM implantation or fixation for histology.</p>
                <p>

                    <bold>Chorioallantoic membrane (CAM) assay</bold>
                </p>
                <p>Our methods for generating cell-line derived xenografts have briefly been described previously (
                    <xref ref-type="bibr" rid="ref8">Barnett 
                        <italic toggle="yes">et al.</italic>, 2022</xref>), some stages of the process are very similar but here we provide a more detailed overview.</p>
                <p>

                    <bold>Egg and incubator information</bold>
                </p>
                <p>Fertilized brown chicken eggs were purchased from MedEggs Ltd (UK) and stored for a maximum of 2 weeks at 14&#x00b0;C in a temperature-controlled chiller (Haier, China) until starting the experiments. Egg incubation was carried out in OvaEasy 380 Advance EX Series II Automatic egg incubators fitted with humidity pumps (Brinsea, UK) (
                    <xref ref-type="fig" rid="f2">
Figure 2A</xref>). Temperature and humidity were set at 37.8&#x00b0;C and 50%, respectively and continually monitored via dual humidity and temperature probes (T-Scan Solutions, UK).</p>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>
Figure 2. </label>
                    <caption>
                        <title>Technical considerations for egg experiments.</title>
                        <p>A, Brinsea egg incubator modifications. Dual humidity and temperature T-Scan probes are fitted inside the egg incubators via the front vent (Ai-ii). 5L plastic containers are used as water reservoirs to increase the water capacity (Aiii). B, Eggs are incubated horizontally and placed to ensure they are touching neighboring eggs and unable to roll.</p>
                    </caption>
                    <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure2.gif"/>
                </fig>
                <p>

                    <bold>Initiating embryo development</bold>
                </p>
                <p>Embryonic development was initiated by transferring eggs to 37&#x00b0;C. Egg trays and dividers were cleaned with 1X Brinsea disinfectant prior to adding the eggs. Eggs were cleaned with 1X Brinsea disinfectant by spraying the solution onto 2-ply blue roll and then thoroughly wiping each egg, to ensure all contaminant and foreign bodies were removed. The eggs were placed on their side in a row (max 5 per row, maximum 30 per tray), starting at one end of the tray ensuring that each egg was butted up against the next one to prevent eggs rotating forwards (
                    <xref ref-type="fig" rid="f2">
Figure 2B</xref>). Each egg was labelled with pencil to indicate start date and incubated with rocking (shelf rotation set to 45&#x00b0;, rotating every 45 minutes) from embryonic day 0 (E0) until E3.</p>
                <p>

                    <bold>Windowing</bold>
                </p>
                <p>On E3, eggs were taken one at a time from the incubator and a small window was cut in the eggshell to provide access to the CAM. To allow for the opening to be cut, a second air pocket was made by pricking a hole in the blunt end of the egg (location of the natural air cell) with an egg piercer (Amazon, WA, USA). Next, a 5 mL syringe (Scientific Lab Supplies Ltd, UK) equipped with a 20 g 1 inch needle (Fisher Scientific) was inserted through the hole at a 45&#x00b0; angle to the bottom of the shell and 3-5 mL of albumin was extracted. The hole was sealed with a small square piece of orange tape (Scientific Lab Supplies Ltd). Next a three-sided rectangular window (approximately 2 cm &#x00d7; 1 cm) was cut in the top of the egg (the side facing up during E0-E3 incubation). Firstly, a hole where the scissors were to be inserted to cut the window was created with the egg piecer, then a piece of Scotch Magic Tape (Banner, UK) was placed over the region to be cut to prevent eggshell falling into the egg. Next, the point of the scissors was inserted into the pre-made hole and the rectangle cut, ensuring scissors were kept horizontal to avoid damage to the embryo. The egg was visually inspected for a viable embryo (determined via observation of a beating heart) and then the window sealed with a second piece of Scotch tape. Eggs were then incubated as before but without rocking until the end of the experiment.</p>
                <p>

                    <bold>Implantation</bold>
                </p>
                <p>In preparation for implantation: lens tissue (Fisher Scientific) was cut into 1 cm &#x00d7; 2 cm strips and UV sterilized for 1 hour; 1-2 mm thick rings for implanting were cut from Portex tubing (1 mm wall thickness; 4 mm inner diameter) and sterilized overnight in 70% ethanol; and tweezers were cleaned (1 for lens tissue, 1 for opening egg window, 1 for handling tissue fragments). On E7 eggs were inspected to ascertain how many viable eggs were available for implant, and any non-viable eggs were discarded. In case of any leakage from the egg, a new tray lined with 2-ply blue roll was prepared. The eggs were returned to 37&#x00b0;C until ready to implant. The required number of vials of tissue were thawed (see section on reanimation of cryopreserved tissue fragments). One egg was removed from the incubator at a time for implantation to reduce temperature fluctuations. The piece of eggshell covering the window was removed completely, transferred to a new piece of scotch tape and left facing upwards in the hood. The egg was inspected to locate the CAM and identify an appropriate region for implantation, ideally at the bifurcation of a blood vessel. Then, using sterile tweezers, a strip of folded lens tissue was used to touch the CAM to dry/traumatize the area to be implanted. This was repeated until the area was sufficiently dry (indicated by the tissue sticking to the CAM) or a small bleed was visible. One sterilized ring was then placed on the area and one tissue fragment placed inside it. The window was resealed with the tape holding the piece of eggshell, with a second piece added perpendicularly to form a cross and ensure the window was fully sealed to reduce evaporation. The egg was given a unique identifier, labelling with pen on the colored tape on the blunt end or on the eggshell in pencil, and carefully transferred back to the incubator.</p>
                <p>

                    <bold>Dissection and Imaging of CAM-PDX
</bold>
                </p>
                <p>On E14, CAM-PDXs were imaged and dissected. PET/CT may be performed on E13 (see 
                    <italic toggle="yes">In ovo</italic> PET/CT imaging section), and where this was the case, the residual radioactivity was measured with a radiation monitor (Radhound; Southern Scientific, UK) to ensure the radiotracer has decayed sufficiently (below 1000 count per second) prior to dissection. Before starting, 1 ml aliquots of 10% neutral buffered formalin (NBF) were prepared in 1.5 ml microfuge tubes (1 per sample) in a fume hood. For imaging 
                    <italic toggle="yes">in situ</italic>, the egg was placed in a holder, such as a 35 mm dish, the window in the eggshell was enlarged (if not done at a previous stage) and brightfield images of the xenograft on the CAM were captured using Leica M165FC fluorescence stereomicroscope with 16.5:1 zoom optics, fitted with a Leica DFC425 C camera (Leica Biosystems, Germany). Then the PDX was excised. This was achieved using tweezers, such as No.5 110 mm tweezers (Dumont, Switzerland), to hold the CAM taut and cutting around the PDX with micro-spring scissors (Fine Science Tools, Germany) ensuring 0.5-1.0 cm of CAM remained around the sample. The sample was placed in a drop of PBS in a 10 cm dish and the embryo immediately terminated via decapitation 
                    <italic toggle="yes">in situ.</italic> The sample was washed briefly to remove excess blood by agitation in the PBS droplet and then transferred to a fresh drop of PBS for imaging. The sample was orientated using two pairs of tweezers so that the underneath of the sample could be imaged, whilst ensuring the CAM was laid out flat. The sample was then placed into fixative.</p>
                <p>

                    <bold>Passaging</bold>
                </p>
                <p>On E14 the resulting CAM-PDX was dissected as described in the previous section. Following imaging, the PDX was trimmed using micro-spring scissors to remove the CAM and then cut in half using a sterile scalpel. One half was then implanted onto the CAM in an E7 egg, as described above, ensuring that the freshly cut side was placed onto the prepared CAM.</p>
                <p>

                    <bold>CAM-PDX scoring</bold>
                </p>
                <p>Each CAM-PDX was evaluated macroscopically for vascularization, as an indicator for engraftment, by assessing two images. Images of the PDX 
                    <italic toggle="yes">in situ</italic> on the CAM and post-dissection from the underneath were scored for the presence of radial and feeder vessels, respectively (
                    <xref ref-type="fig" rid="f3">
Figure 3</xref>). Scoring was conducted by two independent observers. Eggs were classified as &#x2018;not scorable&#x2019; if a decision could not be rendered by both observers with example cases including inadequate image quality, the CAM-PDX being too close the eggshell or too much blood on the CAM.</p>
                <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                    <label>
Figure 3. </label>
                    <caption>
                        <title>Scoring CAM-PDX for vascularization as a surrogate marker of engraftment.</title>
                        <p>Representative images of radial vessels (black arrowheads) surrounding the CAM-PDX in ovo and feeder vessels (white arrowheads) visible on the underneath of the CAM-PDX post-dissection. Scale bar represents 2.5 mm.</p>
                    </caption>
                    <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure3.gif"/>
                </fig>
            </sec>
            <sec id="sec15">
                <title>Histology</title>
                <p>

                    <bold>Fixation, processing, embedding and sectioning</bold>
                </p>
                <p>Tissue fragments or CAM xenografts were placed in 1.5 mL tubes containing 1 mL 10% NBF and fixed for a minimum of 16 hours. The 10% NBF was removed and replaced with 1 mL 70% ethanol. Prior to processing, tissue samples were transferred to biopsy tissue cassettes (Fisher Scientific) and kept submerged in 70% ethanol until they were processed. Any small tissue fragments, such as &#x201c;fresh-fixed&#x201d; 1 mm
                    <sup>3</sup> controls, were wrapped in lens tissue prior to placing inside the cassettes to prevent loss of the small samples during processing. The cassettes containing the samples were loaded into a Leica ASP 300S tissue processor and run according to the program outlined in 
                    <xref ref-type="table" rid="T3">
Table 3</xref>. Upon completion, samples were immediately transferred to a Leica EG1150H embedding station and samples embedded in Formula R paraffin wax. CAM xenograft samples were embedded in an orientation to ensure a sagittal section through the sample (
                    <xref ref-type="fig" rid="f4">
Figure 4A</xref>). The paraffin blocks were sectioned using a Thermo HM 340E Electronic Rotary Microtome fitted with MX35 ultra blades. Four-micron sections were collected on SuperFrost plus adhesion slides (according to layout in 
                    <xref ref-type="fig" rid="f4">
Figure 4Aiv</xref> and 
                    <xref ref-type="fig" rid="f4">4B</xref>) and placed in an oven overnight at 37&#x00b0;C.</p>
                <table-wrap id="T3" orientation="portrait" position="float">
                    <label>
Table 3. </label>
                    <caption>
                        <title>Tissue processor program.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Reagent</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Duration</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Temperature</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Pressure (P)/Vacuum (V)</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
Drain time (seconds)</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ethanol 70%</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ethanol 90%</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ethanol 100%</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ethanol 100%</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ethanol 100%</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ethanol 100%</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Xylene</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Xylene</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Room temperature</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Xylene</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">40&#x00b0;C</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Paraffin Wax</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">62&#x00b0;C</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Paraffin Wax</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">15 minutes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">62&#x00b0;C</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">V</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">140</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                    <label>
Figure 4. </label>
                    <caption>
                        <title>Technical considerations for histology.</title>
                        <p>A, Workflow diagram of CAM-PDX processing for histology. CAM-PDX samples are embedded in paraffin so that sectioning the block results in sagittal sections through the tumor nodule and CAM (Ai-iii). Sections (here numbered 1-48 as an example) are placed onto slides in a configuration of 3 sections per slide that provides an overview through the xenograft with minimal slide staining; numbering (black text) refers to sequentially cut sections (Aiv). Sections are collected in up to 10 batches containing 8 slides that will be stained for different markers on contiguous slides. Figure created with Adobe Illustrator 2025 (Version 29.4 (64-bit), RRID:SCR_010279). B, One slide per batch was stained for pan-Cytokeratin to identify areas within the sample with detectable tumor cells (indicated by arrowheads), to identify the most suitable batch for staining for further markers. Scale bars represent 1000 &#x03bc;m.</p>
                    </caption>
                    <graphic id="gr4" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure4.gif"/>
                </fig>
                <p>

                    <bold>Hematoxylin and Eosin (H&amp;E) staining</bold>
                </p>
                <p>Automated H&amp;E staining and cover slipping was carried out on a Leica ST5020-CV5030 Stainer Integrated Workstation according to program shown in 
                    <xref ref-type="table" rid="T4">
Table 4</xref>.</p>
                <table-wrap id="T4" orientation="portrait" position="float">
                    <label>
Table 4. </label>
                    <caption>
                        <title>Hematoxylin and eosin (H&amp;E) auto stainer program settings.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Reagent</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
Timing</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Xylene</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Xylene</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">100% Ethanol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1 minute</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">90% Ethanol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1 minute</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">70% Ethanol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1 minute</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1 minute</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Hematoxylin (Harris)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1 minute</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1% Acid Alcohol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">15 sec</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Eosin Y (alcoholic)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">15 seconds</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">70% Ethanol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">30 seconds</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">90% Ethanol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">30 seconds</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">100% Ethanol</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">30 seconds</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Xylene</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Xylene</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2 minutes</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>

                    <bold>Immunohistochemistry</bold>
                </p>
                <p>Antibody staining was conducted on a Leica Bond RXm automated stainer. The staining program used (
                    <xref ref-type="table" rid="T5">
Table 5</xref>) was the BOND Polymer Refine IHC Protocol, utilizing the BOND Polymer Refine Detection system which is supplied as ready-to-use containing a peroxide block, post primary (secondary antibodies: rabbit anti-mouse IgG and anti-rabbit Poly-HRP IgG), polymer reagent, 3,3&#x2019;-Diaminobenzidine tetrahydrochloride hydrate (DAB) chromogen for visualization and hematoxylin counterstain. Details of primary antibodies are provided in 
                    <xref ref-type="table" rid="T6">
Table 6</xref>. All antibodies were optimized in-house on appropriate control tissue and staining performed in parallel to negative or isotope controls (
                    <xref ref-type="bibr" rid="ref8">Barnett 
                        <italic toggle="yes">et al.</italic>, 2022</xref>). At the end of the staining program, slides were removed and placed in a staining rack. The rack was placed in a slide-staining pot and rinsed continually for 5 minutes with cold tap water, ensuring that the flowing water did not run directly onto the slides. The slides were then passed through a dehydration series consisting of 3X washes in 100% ethanol and 2X washes in xylene. Slides were gently agitated during each wash step for 30 seconds. Slides were kept in the final xylene solution and removed one at a time for cover slipping. Each slide was sealed with DPX mountant and a single 22 &#x00d7; 50 mm coverslip, ensuring any bubbles were removed.</p>
                <table-wrap id="T5" orientation="portrait" position="float">
                    <label>
Table 5. </label>
                    <caption>
                        <title>Leica Bond RXm immunohistochemistry (IHC) staining program settings.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Step</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Reagents</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Time</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Dewax</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Dewax Solution, 100% Alcohol, BOND Wash Solution</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Pre-programmed Leica BOND</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Antigen Retrieval</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Epitope Retrieval ER1 Solution or BOND Epitope Retrieval ER2 Solution</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">HIER 20 minutes with ER1 or HIER 20 minutes with ER2</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Wash Solution</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3 &#x00d7; 0 minutes
                                    <xref ref-type="table-fn" rid="tfn1">*</xref>
                                    <break/>1 &#x00d7; 3 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Peroxide Block</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Refine Detection Kit Peroxide Block
                                    <xref ref-type="table-fn" rid="tfn1">*</xref>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Wash Solution</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3 &#x00d7; 0 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Primary Antibody</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Diluted in #8112 SignalStain&#x00ae; Antibody Diluent</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">15 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Wash Solution</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3 &#x00d7; 2 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="2" valign="middle">Secondary Detection</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Rabbit anti mouse IgG &lt;10 &#x03bc;g/ml in 10% v/v animal serum in Tris buffered saline/0.1% ProClin&#x2122; 950</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Anti-rabbit Poly-HRP-IgG &lt;25 &#x03bc;g/ml in 10% v/v animal serum in Tris buffered saline/0.1% ProClin&#x2122; 950</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Wash Solution/Deionized Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Custom (see main text)</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Visualization</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Refine Detection Kit Mixed DAB
                                    <xref ref-type="table-fn" rid="tfn1">*</xref>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">10 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Deionized Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3 &#x00d7; 0 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Counterstain</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Refine Detection Kit Hematoxylin
                                    <xref ref-type="table-fn" rid="tfn1">*</xref>
                                </td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Deionized Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">0 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BOND Wash Solution</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">0 minutes</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">WASH</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Deionized Water</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">0 minutes</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <fn-group content-type="footnotes">
                            <fn id="tfn1">
                                <label>*</label>
                                <p>Wash steps set to 0 minutes indicates slides were flushed with no incubation.</p>
                            </fn>
                        </fn-group>
                    </table-wrap-foot>
                </table-wrap>
                <table-wrap id="T6" orientation="portrait" position="float">
                    <label>
Table 6. </label>
                    <caption>
                        <title>Antibodies used for immunohistochemistry.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Antibody</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Clonality</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Catalogue #</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Batch No</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Brand</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">RRID</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Dilution</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Antigen retrieval</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
Reactivity</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Pan Cytokeratin (MNF116)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">monoclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">MA1-26237</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">XK3746097F</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Invitrogen</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_794730</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1:80</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Calretinin (CALB2)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">polyclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">HPA007306</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A83215</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Sigma</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_1078385</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1:75</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">BAP1 (C-4)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">monoclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">sc-28383</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">I2517</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Santa Cruz Biotechnology</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_626723</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1:250</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Cleaved Caspase-3 (Asp175)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">polyclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">#9661</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">47</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Cell Signaling Technology</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_2341188</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1:500</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ki67</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">monoclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NCL-L-Ki67-MM1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">6062741</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Novocastra</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_563841</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1:200</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Alpha smooth muscle actin</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">polyclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ab5694</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">GR3432718-3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Abcam</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_2223021</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1:200</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human, chicken</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">CD4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">monoclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NCL-L-CD4&#x2013;368</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">46168</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Novocastra</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_563559</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Ready to use</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">CD8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">monoclonal</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">M7103</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">20011401</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Agilent Dako</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">AB_2075537</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1:200</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">ER2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Human</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>

                    <bold>Slide scanning and image processing</bold>
                </p>
                <p>Whole slide scans were obtained using Leica Aperio CS2 digital slide scanner (services provided by Liverpool University Biobank). Images were viewed in QuPath (RRID:SCR_018257) (
                    <xref ref-type="bibr" rid="ref27">Bankhead 
                        <italic toggle="yes">et al.</italic>, 2017</xref>) and scale bars added via the built-in ImageJ extension (RRID:SCR_003070) (
                    <xref ref-type="bibr" rid="ref28">Schindelin 
                        <italic toggle="yes">et al.</italic>, 2012</xref>).</p>
            </sec>
            <sec id="sec16">
                <title>

                    <italic toggle="yes">In Ovo</italic> Positron-Emission-Tomography/Computed Tomography (PET/CT) imaging</title>
                <p>

                    <bold>Radiotracer preparation</bold>
                </p>
                <p>PET/CT imaging of tumors may be performed 
                    <italic toggle="yes">in ovo</italic>, as optional analysis prior to dissection of the tumor nodules. Since the half-life of [
                    <sup>18</sup>F]-FDG is approximately 110 minutes (
                    <xref ref-type="bibr" rid="ref29">Ido 
                        <italic toggle="yes">et al.</italic>, 1978</xref>), samples are safe to handle the day after radiotracer injection, and PET/CT imaging can therefore be performed on E13 followed by dissection and termination of experiments on E14 (
                    <xref ref-type="fig" rid="f5">
Figure 5A</xref>). [
                    <sup>18</sup>F]-FDG (1000 MBq; Alliance Medical Radiopharmacy, UK) was ordered for delivery on the morning of E13 for each experiment. Upon arrival total radioactivity was measured and typically ranged from 600-800 MBq. Behind lead shielding, the [
                    <sup>18</sup>F]-FDG stock solution was diluted in a 1.5 mL microfuge tube with sterile 0.9% sodium chloride solution (B.Braun, Germany) to give approximately 60 MBq [
                    <sup>18</sup>F]-FDG in 1.5 mL. Due to the relatively short half-life of [
                    <sup>18</sup>F]-FDG, the tracer volume was adjusted each time the tracer was prepared for injection. The injected radioactivity per egg was 5 &#x00b1; 1 MBq in a final volume of 100-150 &#x03bc;L, administered using a 1 mL BD Luer slip syringe (Scientific Laboratory Supplies Ltd, UK) with a 33G 12 mm hypodermic needle (Meso-relle; UKMedi, UK). Radioactivity was measured via an activimeter (Capintec CRC-15R; Southern Scientific Ltd, UK) and documented immediately prior to injection. All work was performed in line with local rules and UK regulations, the Ionizing Radiations Regulations 2017 (IRR17 plus the Approved Code of Practice) and the Environmental Permitting Regulations 2016 (EPR2016).</p>
                <fig fig-type="figure" id="f5" orientation="portrait" position="float">
                    <label>
Figure 5. </label>
                    <caption>
                        <title>Preparation of eggs for preclinical PET/CT imaging.</title>
                        <p>A, Experimental timeline. PET/CT performed on embryonic day 13 (E13). B, Preparing the eggs for imaging. Radiotracer is injected intravenously, demonstrated here by injecting food dye at the point indicated by the arrow (Bi). Approximately 30 seconds after injection, food dye was completely distributed within the egg (Bii). Immediate compression (a few seconds after injection) should be used to stop any bleeding at the site of injection if required. Two eggs are fixed in position in the imaging bed with tape (Biii) and then loaded into the PET/CT scanner (Biv).</p>
                    </caption>
                    <graphic id="gr5" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure5.gif"/>
                </fig>
                <p>

                    <bold>Intravenous injection of radiotracer</bold>
                </p>
                <p>One at a time, an implanted egg was placed in a suitable holder (such as a 35 mm dish) and the window in the eggshell was enlarged using sterile stainless-steel blunt end forceps to increase CAM accessibility for injection of the radiotracer. Whilst enlarging the window, care was taken to avoid dropping eggshell debris inside the egg or removing too much shell, which might damage the CAM and cause subsequent bleeding. A large vein was located by observing the blood flow direction and blood vessel structure. A site near the shell, with the blood flow towards the center of the egg, was chosen for injection (
                    <xref ref-type="fig" rid="f5">
Figure 5Bi</xref>). Injection of air bubbles during the procedure, which may increase the risk of killing the embryo, was avoided by carefully releasing any entrapped air before injection. The pre-loaded 33G needle and 1 mL syringe were inserted into the CAM (first pressure point) next to the chosen vein and then into the vein (second pressure point), ensuring that the vein was accessed from the side to enable visualization of the needle depth and to reduce the chance of puncturing through the blood vessel. Successful insertion of the needle was assessed by carefully moving the needle side-to-side, to check that the blood vessel followed these movements. Once it was confirmed that the needle was in the vein, the radiotracer was injected slowly and continuously in the direction of the blood flow (
                    <xref ref-type="fig" rid="f5">
Figure 5Bi</xref>, Supplementary video 1 can be viewed via the figshare research repository (
                    <xref ref-type="bibr" rid="ref46">Schulze J, 2025</xref>)). Finally, the needle was slowly removed. In case of bleeding, light compression with a sterile wipe was applied for 30-60 seconds to stop any outflow (
                    <xref ref-type="fig" rid="f5">
Figure 5Bii</xref>). Bleeding caused by the injection technique did not typically cause issues if it was stopped swiftly. Two eggs were prepared for imaging at a time, with 20-minute intervals between subsequent injections. Radioactivity before and after the injection was recorded and used to calculate the &#x2018;activity of injected dose at time of injection&#x2019; (Equation 1-2, 
                    <xref ref-type="table" rid="T7">
Table 7</xref>).</p>
                <table-wrap id="T7" orientation="portrait" position="float">
                    <label>
Table 7. </label>
                    <caption>
                        <title>Equations.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="2" rowspan="1" valign="top">Equation</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Terms</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>(1)</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">

                                    <inline-formula>

                                        <mml:math display="inline">
                                            <mml:mi>&#x03bb;</mml:mi>
                                            <mml:mo>=</mml:mo>
                                            <mml:mfrac>
                                                <mml:mrow>
                                                    <mml:mo>ln</mml:mo>
                                                    <mml:mo>(</mml:mo>
                                                    <mml:mn>2</mml:mn>
                                                    <mml:mo>)</mml:mo>
                                                </mml:mrow>
                                                <mml:mrow>
                                                    <mml:msub>
                                                        <mml:mtext mathvariant="italic">Halflife</mml:mtext>
                                                        <mml:mi mathvariant="italic">FDG</mml:mi>
                                                    </mml:msub>
                                                    <mml:mspace width="0.25em"/>
                                                    <mml:msub>
                                                        <mml:mi>T</mml:mi>
                                                        <mml:mrow>
                                                            <mml:mn>1</mml:mn>
                                                            <mml:mo>/</mml:mo>
                                                            <mml:mn>2</mml:mn>
                                                        </mml:mrow>
                                                    </mml:msub>
                                                </mml:mrow>
                                            </mml:mfrac>
                                        </mml:math>
</inline-formula>
</td>
                                <td align="left" colspan="1" rowspan="3" valign="middle">
                                    <bold>

                                        <italic toggle="yes">&#x03bb;</italic>
</bold> = Decay constant (min
                                    <sup>&#x2212;1</sup>) for [
                                    <sup>18</sup>F]-FDG, calculated using equation 1

                                    <break/>

                                    <italic toggle="yes">Halflife</italic>
                                    <sub>

                                        <italic toggle="yes">FDG</italic>
                                    </sub> 
                                    <italic toggle="yes">T</italic>
                                    <sub>

                                        <italic toggle="yes">1/2</italic>
                                    </sub> = 109.77 minutes

                                    <break/>

                                    <italic toggle="yes">A</italic>
                                    <sub>

                                        <italic toggle="yes">t</italic>
                                    </sub> = Activity (Bq) of injected dose corrected to decay of radiotracer, calculated using 
equation 2

                                    <break/>

                                    <italic toggle="yes">A</italic>
                                    <sub>

                                        <italic toggle="yes">0</italic>
                                    </sub> = Activity (Bq) of injected dose at time of injection

                                    <break/>

                                    <italic toggle="yes">t</italic> = Time difference (minutes) between injection and start of scanning

                                    <break/>

                                    <italic toggle="yes">SUV</italic>
                                    <sub>

                                        <italic toggle="yes">t</italic>
                                    </sub> = Standardized Uptake Value at 
                                    <italic toggle="yes">t</italic>

                                    <break/>

                                    <italic toggle="yes">C</italic>
                                    <sub>

                                        <italic toggle="yes">ROIt</italic>
                                    </sub> = Concentration of [
                                    <sup>18</sup>F]-FDG (Bq/mL) in region of interest at 
                                    <italic toggle="yes">t</italic>. Calculated by 
Vivoquant software

                                    <break/>

                                    <italic toggle="yes">Body weight</italic> = Weight (g) of egg, average of 50 g weight assumed for all eggs</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">(2)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">

                                    <inline-formula>

                                        <mml:math display="inline">
                                            <mml:msub>
                                                <mml:mi>A</mml:mi>
                                                <mml:mi>t</mml:mi>
                                            </mml:msub>
                                            <mml:mo>=</mml:mo>
                                            <mml:msub>
                                                <mml:mi>A</mml:mi>
                                                <mml:mn>0</mml:mn>
                                            </mml:msub>
                                            <mml:mo>&#x2217;</mml:mo>
                                            <mml:msup>
                                                <mml:mi>e</mml:mi>
                                                <mml:mrow>
                                                    <mml:mo>&#x2212;</mml:mo>
                                                    <mml:mi mathvariant="italic">&#x03bb;t</mml:mi>
                                                </mml:mrow>
                                            </mml:msup>
                                        </mml:math>
</inline-formula>
</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">(3)</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">

                                    <inline-formula>

                                        <mml:math display="inline">
                                            <mml:msub>
                                                <mml:mi mathvariant="italic">SUV</mml:mi>
                                                <mml:mi>t</mml:mi>
                                            </mml:msub>
                                            <mml:mo>=</mml:mo>
                                            <mml:mfrac>
                                                <mml:mrow>
                                                    <mml:msub>
                                                        <mml:mi>C</mml:mi>
                                                        <mml:msub>
                                                            <mml:mi mathvariant="italic">ROI</mml:mi>
                                                            <mml:mi>t</mml:mi>
                                                        </mml:msub>
                                                    </mml:msub>
                                                    <mml:mo>&#x2217;</mml:mo>
                                                    <mml:mtext mathvariant="italic">Body weight</mml:mtext>
                                                </mml:mrow>
                                                <mml:msub>
                                                    <mml:mi>A</mml:mi>
                                                    <mml:mi>t</mml:mi>
                                                </mml:msub>
                                            </mml:mfrac>
                                        </mml:math>
</inline-formula>
</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>

                    <bold>Technical considerations for intravenous injection</bold>
                </p>
                <p>In principle, IV injections can be performed from E8 or earlier (
                    <xref ref-type="bibr" rid="ref31">Easty 
                        <italic toggle="yes">et al.</italic>, 1969</xref>). However, commercially available needles with a small enough gauge are difficult to acquire and pulling needles in house requires specialist equipment. Therefore, we recommend performing IV injection from E11 onwards since a higher injection success rate is achievable due to larger blood vessels being available to inject. Choosing a larger vessel reduces the chance of causing damage and blood loss, thus having less effect on survival. Once competent in the radiotracer injection technique, there is the potential to image at least 24 eggs per day, with the only limiting factor being the activity of the decaying radiotracer.</p>
                <p>

                    <bold>CT scan followed by static PET (Static PET/CT)</bold>
                </p>
                <p>Eggs were incubated for at least 30 minutes post-injection to allow radiotracer distribution and uptake before scanning (
                    <xref ref-type="bibr" rid="ref23">Warnock 
                        <italic toggle="yes">et al.</italic>, 2013</xref>, 
                    <xref ref-type="bibr" rid="ref24">Smith 
                        <italic toggle="yes">et al.</italic>, 2023</xref>). CT scans were carried out before PET to determine the optimal field of view (FOV, optimization of bed position) to ensure a high spatial resolution. Up to two eggs were placed into the rat bed, held in place with a piece of scotch tape (
                    <xref ref-type="fig" rid="f5">
Figure 5Biii</xref>) and loaded into the X-CUBE Preclinical CT imager (Molecubes NV, Belgium) together (
                    <xref ref-type="fig" rid="f5">
Figure 5Biv</xref>). CT scans were acquired using the standard protocol (&#x2018;general purpose&#x2019;; eggs received 27 mGy dose). Once the CT scans were complete, the multimodal bed containing the eggs was immediately transferred to the &#x03b2;-CUBE Preclinical PET imager (Molecubes NV). Acquisition duration was set to 15 minutes and started in the optimal bed position (as determined via CT). The time between injection of the radiotracer and starting PET imaging was noted. Once scanning was complete, the eggs were returned to the incubator to maintain the correct temperature.</p>
                <p>

                    <bold>PET/CT data reconstruction</bold>
                </p>
                <p>The PET/CT data were reconstructed (see 
                    <xref ref-type="table" rid="T8">
Table 8</xref> for settings) using the proprietary Molecubes software (Build version: 1.7.6 H 989d0998; Copyright license registered to University of Liverpool &#x2013; Centre for Preclinical Imaging). Reconstructed PET/CT data were then visualized, images co-registered and PET signal from PDX tumors quantified by using Invicro VivoQuant 2020 (Copyright license registered to University of Liverpool &#x2013; Centre for Preclinical Imaging; RRID:SCR_025778; Invicro LLCm, MA, USA). A three-dimensional region of interest (ROI) was manually drawn around each xenograft (
                    <xref ref-type="fig" rid="f6">
Figure 6</xref>) to quantify the concentration of [
                    <sup>18</sup>F]-FDG at a defined timepoint (C
                    <sub>ROIt</sub>). This value was used to calculate the accumulated standardized uptake value (SUVacc) across the CAM-PDX (Equation 3, 
                    <xref ref-type="table" rid="T7">
Table 7</xref> (
                    <xref ref-type="bibr" rid="ref32">Basu 
                        <italic toggle="yes">et al.</italic>, 2007</xref>)).</p>
                <table-wrap id="T8" orientation="portrait" position="float">
                    <label>
Table 8. </label>
                    <caption>
                        <title>Positron emission tomography/computed tomography (PET/CT) data reconstruction settings.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>CT data</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Algorithm type: iterative
                                    <break/>Isometric voxel size: 200 &#x03bc;m
                                    <break/>Noise reduction: no</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <bold>PET data</bold>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Isometric voxel size: 400 &#x03bc;m
                                    <break/>Number of iterations: 30
                                    <break/>Energy resolution: 511 kEV/30%</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <fig fig-type="figure" id="f6" orientation="portrait" position="float">
                    <label>
Figure 6. </label>
                    <caption>
                        <title>PET data analysis.</title>
                        <p>A, User Interface of Invicro Vivoquant software showing different sectional planes (transverse, sagittal and coronal) from a reconstructed CAM-PDX.
 B, Input controls and operator settings for drawing the region of interest (ROI) manually (painting tool; sphere, size set to 3 pixel). C, CAM-PDX PET signal of example shown in A overlaid with manually drawn ROI. D, Linearity between voxel size and accumulated standardized uptake value (SUVacc) PET signal for different CAM-PDX underlined consistency in manual ROI drawing. Coefficient of determination; R
                            <sup>2</sup> = 0.90. Values used are reported in 
                            <xref ref-type="table" rid="T9">
Table 9</xref>.</p>
                    </caption>
                    <graphic id="gr6" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure6.gif"/>
                </fig>
                <table-wrap id="T9" orientation="portrait" position="float">
                    <label>
Table 9. </label>
                    <caption>
                        <title>Positron emission tomography (PET) data.</title>
                        <p>SUVacc = accumulated standardized uptake value. ROI = region of interest analyzed with size in voxels. The values used to calculate SUVacc can be viewed via the figshare research repository (
                            <xref ref-type="bibr" rid="ref46">Schulze J, 2025</xref>).</p>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Experiment</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Patient sample ID</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Region</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Egg ID</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Freezing media</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">SUVacc</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
ROI (Voxels)</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">16.238</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">282</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">57.468</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1035</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">48.024</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">734</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">45.192</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">517</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">E</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">107.710</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1360</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">D</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">62.162</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">796</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">D</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">5.158</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">87</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">D</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">11.375</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">246</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">D</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">26.206</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">416</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">D</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">15.201</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">252</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">F</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">9.009</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">149</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">F</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">86.311</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1232</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">F</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">
                                    <styled-content style="#0D0D0D" style-type="color">40.677</styled-content>
</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">654</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">F</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">163.126</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1733</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">B</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8.848</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">114</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">B</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">48.462</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">575</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">6</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">B</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">18.168</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">151</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">14</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">58.827</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">307</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">18</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">9.762</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">115</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">21</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">0.000</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">0</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">22</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">14.253</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">150</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">23</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">26.798</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">199</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">24</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3.047</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">58</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">25</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">High FBS</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">18.121</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">445</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>

                    <bold>Experimental design and statistical evaluation</bold>
                </p>
                <p>Each xenografted egg was considered as one biological unit and all eggs prepared and imaged together as one experimental unit. Sample size per experimental unit was determined by the number of eggs (24 maximum) that can be scanned in one day. Biological units were included if they underwent successful engraftment and tracer injection. Biological units were excluded if they were unfertilized, died prior to E13 or showed signs of contamination. To account for exclusions, experiments were started with twice the number of biological units required at E14. For comparison of frozen tissue, biological units were randomly divided into two groups on E7.</p>
                <p>Statistical analyses were performed in OriginPro 2021b Academic (OriginLab Corporation, MA, USA; RRID:SCR_014212). Distribution and variance of data was assessed by Shapiro&#x2013;Wilk test and Two-Sample Test for variance, respectively. Data were then analyzed by parametric or non-parametric test as appropriate. The number of independent samples, definition of error bars, and the statistical test employed are described in relevant figure legends. 
                    <italic toggle="yes">p</italic> values less than 0.05 were considered significant.</p>
            </sec>
            <sec id="sec17">
                <title>Controlling bias, variability and limitations of datasets</title>
                <p>

                    <bold>Potential sources of bias</bold>
                </p>
                <p>Sample bias: No formal inclusion or exclusion criteria were applied to the sample collection and all samples available from patients that consented were collected without prior knowledge of histological subtype, or BAP1 status (
                    <xref ref-type="table" rid="T10">
Table 10</xref>). Samples are linked anonymized but patient information, such as age and gender, has not been accessed during method development. However, we would expect a bias towards epithelioid as this represents 70% of mesothelioma cases in England and Wales, as well as samples from older males, reflecting the much higher incidence of mesothelioma in men (
                    <xref ref-type="bibr" rid="ref33">Husain 
                        <italic toggle="yes">et al.</italic>, 2024</xref>).</p>
                <table-wrap id="T10" orientation="portrait" position="float">
                    <label>
Table 10. </label>
                    <caption>
                        <title>Patient tissue collected under Mesobank ethics.</title>
                        <p>Summary of the patient samples collected indicating our in-house ID, whether it was subsequently confirmed as mesothelioma, histological subtype, BRCA1-associated protein 1 (BAP1) status, whether the sample has been assessed for implantation (CAM-PDX), and which figures the samples appear in. N/A = not applicable.</p>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">ID</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Mesothelioma diagnosis</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Histological subtype</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
BAP1 status</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
CAM-PDX
</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
Figures</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R1</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NO</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R2</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">YES</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Sarcomatoid</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Positive</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Yes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">3, 7</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R3</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NO</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R4</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">YES</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Epithelioid</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Unknown</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Yes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R5</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">YES</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Epithelioid</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Negative</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Yes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">12</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R6</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NO</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R7</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NO</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R8</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">YES</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Epithelioid</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Positive</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Yes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">4, 8, 9, 10, 11, 13</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R9</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NO</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R10</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">YES</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Epithelioid</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Negative</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">No</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R11</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">YES</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Epithelioid</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Positive</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Yes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">8</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R12</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NO</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R13</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">NO</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="middle">R16</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">YES</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Epithelioid</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Unknown at time of publication</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">Yes</td>
                                <td align="left" colspan="1" rowspan="1" valign="middle">N/A</td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
                <p>Vascularization scoring: To reduce observer bias, each CAM-PDX was scored macroscopically for engraftment by two independent researchers.</p>
                <p>PET/CT analysis: To quantify the PET signal for each CAM-PDX, a ROI was manually drawn in the Invicro Vivoquant software (
                    <xref ref-type="fig" rid="f6">
Figure 6</xref>). For consistency the same settings (geometry and size) for the selection tool were used each time. To check for variability in ROIs, the SUVacc for each CAM-PDX was plotted against voxel size. A coefficient of determination (R
                    <sup>2</sup>) of 0.90 confirmed consistency between ROIs.</p>
                <p>

                    <bold>Potential sources of variability</bold>
                </p>
                <p>Egg survival: Many factors influence egg quality and variability in survival, including the climate the chickens are exposed to before laying and sudden changes to their environment, temperature during transportation, duration between laying and initiating development, temperature fluctuations during the experiment, number of interventions during the experiment, cleanliness and decontamination procedures. In our experience survival to E14 can range from 50 to 80%.</p>
                <p>Implantation: There could be inter-researcher differences in technique, however experiments were performed by three independent researchers according to standard operating protocols.</p>
                <p>PET signal readout: Standardized uptake value (SUV) allows for normalization between CAM-PDXs by removing variability introduced through injected doses and time differences.</p>
                <p>

                    <bold>Limitations of datasets</bold>
                </p>
                <p>Patient samples: Since this article is intended to demonstrate proof of principle and methodology development, here we present detailed data for samples collected from only three patients (one sarcomatoid and two epithelioid). However, vascularization of samples from five patients is also summarized. An overview of all patient samples collected is provided in 
                    <xref ref-type="table" rid="T10">
Table 10</xref>.</p>
            </sec>
        </sec>
        <sec id="sec18" sec-type="results">
            <title>Results</title>
            <p>As initial proof of principle that freshly collected mesothelioma tissue can engraft onto the CAM, we scheduled initiation of embryo development and windowing so that eggs were ready for engraftment at E7 on the day of the biopsy surgery. We implanted 1 mm
                <sup>3</sup> fragments of fresh sarcomatoid tissue at E7 and, by E14, we observed that 93% (n = 15) of nodules were vascularized based on evidence of remodeling of the CAM vasculature and feeder vessels (
                <xref ref-type="fig" rid="f3">
Figures 3</xref> and 
                <xref ref-type="fig" rid="f7">7A</xref>; 
                <xref ref-type="table" rid="T11">
Table 11</xref>). Immunohistochemical assessment of the PDXs showed the presence of calretinin (CalB2)-positive mesothelioma cells and expert pathological assessment of H&amp;E staining found localized spindle cell proliferation showing atypical cells with hyperchromatic nuclei favoring sarcomatoid mesothelioma cells, which was consistent with the patient&#x2019;s diagnosis. The mesothelioma cells were BAP1-positive, in line with expectations for the sarcomatoid subtype since only 20% are BAP1 negative (
                <xref ref-type="bibr" rid="ref34">Righi 
                    <italic toggle="yes">et al.</italic>, 2016</xref>). Additionally, Ki67-positive proliferating cells were present (black arrowheads, 
                <xref ref-type="fig" rid="f7">
Figure 7B</xref>), with low levels of apoptosis as determined by caspase-3 (cCasp3) staining (
                <xref ref-type="fig" rid="f7">
Figure 7B</xref>). We also observed the presence of host and/or patient-derived alpha smooth muscle actin (&#x03b1;-SMA)-positive fibroblasts, as well as preservation of patient-derived CD8+ and CD4+ immune cells (
                <xref ref-type="fig" rid="f7">
Figure 7B</xref>).</p>
            <fig fig-type="figure" id="f7" orientation="portrait" position="float">
                <label>
Figure 7. </label>
                <caption>
                    <title>Characterization of a sarcomatoid mesothelioma CAM-PDX generated from a fresh biopsy tissue sample.</title>
                    <p>A, Representative brightfield image of freshly dissected CAM-PDX (sarcomatoid; n = 15) at E14, imaged from underneath to show vascularization. Scalebar in overview image represents 2.5 mm and in adjacent zoom image 500 &#x03bc;m. Black arrowheads highlight CAM-PDX feeder vessels. B, Histological and immunohistochemical staining of CAM-PDX generated from fresh sarcomatoid tissue fragments. Images are for example shown in A and are representative of the following CAM-PDXs: H&amp;E n = 6, CalB2 n = 6, BAP1 n = 1, cCasp3 n = 1, Ki67 n = 5, &#x03b1;-SMA n = 5, CD4 n = 5, CD8 n = 5. A minimum of 3 sections per stain per sample were used. Scalebars in overview images represent 500 &#x03bc;m and in adjacent zoom images 50 &#x03bc;m. Black arrowheads highlight Ki67 positive cells.</p>
                </caption>
                <graphic id="gr7" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure7.gif"/>
            </fig>
            <table-wrap id="T11" orientation="portrait" position="float">
                <label>
Table 11. </label>
                <caption>
                    <title>CAM-PDX vascularization scoring.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="2" valign="top"/>
                            <th align="left" colspan="3" rowspan="1" valign="top">Vascularization score - n (%)</th>
                        </tr>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Yes</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">No</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">
Not scorable</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>

                                    <italic toggle="yes">Fresh CAM-PDX
</italic>
</bold>
</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">All (n = 17)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">16 (94%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1 (6%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0 (0%)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Sarcomatoid (n = 15)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">14 (93%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">1 (7%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0 (0%)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Epithelioid (n = 2)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2 (100%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0 (0%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">0 (0%)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">
                                <bold>

                                    <italic toggle="yes">Cryopreserved CAM-PDX
</italic>
</bold>
</td>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                            <td colspan="1" rowspan="1"/>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">All (n = 52)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">42 (78%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">6 (11%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">6 (11%)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">High FBS (n = 27)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">22 (82%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2 (7%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">3 (11%)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="middle">Low FBS (n = 26)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">20 (74%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">4 (15%)</td>
                            <td align="left" colspan="1" rowspan="1" valign="middle">2 (11%)</td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>Since pleural mesothelioma is a heterogenous cancer, where tumor cell content and distribution can differ greatly between, and within patient samples (
                <xref ref-type="fig" rid="f8">
Figure 8A</xref>), a workflow to facilitate pre-screening of the tissue samples (
                <xref ref-type="fig" rid="f1">
Figure 1A</xref>) was employed to optimize selection for implanting and ensure regions with a greater proportion of tumor cells are prioritized for generating the CAM-PDXs. Moreover, surplus biopsy material was obtained immediately after procedure and only 50% of samples collected were later determined to be mesothelioma by the clinical diagnostic service (
                <xref ref-type="table" rid="T10">
Table 10</xref>). Therefore, a freezing protocol was utilized to preserve the tissue whilst maintaining histological concordance with the fresh counterpart (
                <xref ref-type="fig" rid="f8">
Figure 8B</xref>), to allow time for histopathological confirmation of mesothelioma and, in line with 3Rs principles, prevent egg development being initiated unnecessarily should surgery not go ahead as planned, or implanted samples later be determined as not mesothelioma.</p>
            <fig fig-type="figure" id="f8" orientation="portrait" position="float">
                <label>
Figure 8. </label>
                <caption>
                    <title>Mesothelioma tumor cells are diffusely dispersed throughout the collected tissue.</title>
                    <p>Example of pan cytokeratin (panCK) staining of mesothelioma cells for three fresh-fixed regions from two patient biopsy samples (A) and three fragments that were cryopreserved prior to fixation from the same three regions (B). Images are representative for the following samples: R8 n = 7, R11 n = 2. A minimum of 3 sections were used per stain, per sample. Scale bars represent 500 &#x03bc;m.</p>
                </caption>
                <graphic id="gr8" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure8.gif"/>
            </fig>
            <p>Next, we sought to assess two commonly used freezing media, termed &#x201c;High FBS&#x201d; or &#x201c;Low FBS&#x201d; (
                <xref ref-type="table" rid="T2">
Table 2</xref>), to determine which best preserves the tissue architecture and viability of the collected mesothelioma biopsy material. Adjacent fragments of tissue were slow-frozen in either high or low FBS freezing media with one piece of fresh tissue immediately fixed (&#x201c;fresh-fixed&#x201d;) for histology (
                <xref ref-type="fig" rid="f1">
Figure 1</xref>). After a period (&gt;1 month) in liquid nitrogen storage, exemplar fragments were thawed and fixed for histology. H&amp;E staining revealed standard artifacts from freezing in both cryopreservation media, however viable tumor cells were present as confirmed by a pathologist (
                <xref ref-type="fig" rid="f9">
Figure 9</xref>). Immunohistochemical staining confirmed the presence of tumor cells (panCK-positive) that histologically matched the patient diagnosis of BAP1-positive epithelioid mesothelioma, across all three conditions (
                <xref ref-type="fig" rid="f9">
Figure 9</xref>). Further characterization revealed the presence of proliferating cells and no visible apoptosis. Staining for &#x03b1;-SMA showed similar fibroblast composition, whilst CD4+ and CD8+ immune cells were detected in all conditions. Overall, these data show that both freezing methods were successful in preserving tissue architecture whilst maintaining the cellular composition of the sample.</p>
            <fig fig-type="figure" id="f9" orientation="portrait" position="float">
                <label>
Figure 9. </label>
                <caption>
                    <title>Comparison of fresh-fixed and slow-frozen epithelioid mesothelioma biopsy tissue.</title>
                    <p>Representative histological and immunohistochemical staining of fresh-fixed control tissue and tissue cryopreserved in high or low FBS freezing media. Fresh samples: H&amp;E n = 15, panCK n = 15, BAP1 n = 5, cCasp3 n = 1, Ki67 n = 2, &#x03b1;-SMA n = 1, CD4 n = 1, CD8 n = 1. High FBS: H&amp;E n = 9, panCK n = 10, BAP1 n = 2, cCasp3 n = 1, ki67 n = 2, &#x03b1;-SMA n = 1, CD4 n = 1, CD8 n = 1. Low FBS: H&amp;E n = 7, panCK n = 7, BAP1 n = 2, cCasp3 n = 1, Ki67 n = 2, &#x03b1;-SMA n = 1, CD4 n = 1, CD8 n = 1. A minimum of 3 sections per stain per sample were used. Scalebars in overview images represent 500 &#x03bc;m and in adjacent zoom images 50 &#x03bc;m.</p>
                </caption>
                <graphic id="gr9" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure9.gif"/>
            </fig>
            <p>To assess reanimation of viable tissue, we thawed fragments slow-frozen in high or low FBS freezing media (from the same epithelioid biopsy sample region shown in 
                <xref ref-type="fig" rid="f8">
Figures 8</xref> and 
                <xref ref-type="fig" rid="f9">9</xref>) and implanted them onto the CAM. Visual scoring for remodeling of the CAM vasculature and feeder vessels showed that 82% (n = 27) versus 74% (n = 26) of PDX generated from tissue fragments stored in high or low FBS freezing media, respectively, had formed well vascularized nodules after 7 days (
                <xref ref-type="fig" rid="f10">
Figures 10A</xref> and 
                <xref ref-type="fig" rid="f11">11A</xref>, 
                <xref ref-type="table" rid="T11">
Table 11</xref>). On E14, the resulting CAM-PDXs were dissected and processed for histological assessment. We observed retention of mesothelioma cells and BAP1 status, along with presence of proliferating Ki67 cells (black arrowheads, 
                <xref ref-type="fig" rid="f11">
Figure 11B</xref>) and little evidence of apoptosis (
                <xref ref-type="fig" rid="f10">
Figures 10B</xref> and 
                <xref ref-type="fig" rid="f11">11B</xref>). There was also evidence on H&amp;E of nucleated red blood cells inside cross sections of vessel-like (&#x03b1;-SMA positive) structures in the CAM-PDXs (white arrows, 
                <xref ref-type="fig" rid="f11">
Figure 11B</xref>), indicating perfusion of chick blood within pre-existing or new vasculature within the engrafted tissue. The only discernible difference observed was that the frequency of CD4+ and CD8+ T-cells was lower in the CAM-PDXs derived from tissue frozen in the low FBS media (
                <xref ref-type="fig" rid="f11">
Figure 11B</xref>). Overall, these data show successful engraftment on the CAM following reanimation after freezing and it should be noted that despite the sparse tumor cell content of the example CAM-PDX shown in 
                <xref ref-type="fig" rid="f10">
Figure 10</xref>, it offers proof of principle of the methodology irrespective of how challenging the sample is. Finally, as it is common to serially passage mouse PDX (
                <xref ref-type="bibr" rid="ref14">Wu 
                    <italic toggle="yes">et al.</italic>, 2017</xref>), we assessed the feasibility of this for the CAM-PDX model. Briefly, CAM-PDX generated from frozen epithelioid fragments were dissected on E14 (P0), cut in half and transplanted to new E7 eggs (P1). We observed vascularization of the nodules following passaging irrespective of the freezing method (
                <xref ref-type="fig" rid="f12">
Figure 12</xref>). However, expansion of the tissue was not evident over the 7-day engraftment period, likely reflecting the diffuse tumor cellularity and biology of mesothelioma.</p>
            <fig fig-type="figure" id="f10" orientation="portrait" position="float">
                <label>
Figure 10. </label>
                <caption>
                    <title>Epithelioid mesothelioma CAM-PDX generated from cryopreserved biopsy tissue fragments.</title>
                    <p>A, Representative brightfield images of freshly dissected CAM-PDX at E14, generated from epithelioid mesothelioma tissue cryopreserved in high FBS freezing media (
                        <xref ref-type="table" rid="T2">
Table 2</xref>, n = 22 CAM-PDX). CAM-PDX imaged from underneath to highlight vascularization. Scalebars in overview images represent 2.5 mm and 500 &#x03bc;m in adjacent zoom images. B, Histological and immunohistochemical staining of engrafted nodule from cryopreserved tissue. Images are representative of the following CAM-PDXs: H&amp;E n = 15, panCK n = 10, BAP1 n = 5, cCasp3 n = 5, ki67 n = 9, &#x03b1;-SMA n = 5, CD4 n = 2, CD8 n = 2. A minimum of 3 sections per stain, per CAM-PDX were used. Scalebars in overview images represent 500 &#x03bc;m and in adjacent zoom images 50 &#x03bc;m.</p>
                </caption>
                <graphic id="gr10" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure10.gif"/>
            </fig>
            <fig fig-type="figure" id="f11" orientation="portrait" position="float">
                <label>
Figure 11. </label>
                <caption>
                    <title>Epithelioid mesothelioma CAM-PDX generated from cryopreserved biopsy tissue fragments.</title>
                    <p>A, Representative brightfield images of freshly dissected CAM-PDX at E14, generated from epithelioid mesothelioma tissue cryopreserved in low FBS freezing medium (
                        <xref ref-type="table" rid="T2">
Table 2</xref>, n = 20 CAM-PDX). CAM-PDX imaged from underneath to highlight vascularization. Scalebars in overview images represent 2.5 mm and in adjacent zoom images 500 &#x03bc;m. B, Histological and immunohistochemical staining of engrafted nodules from cryopreserved tissue. Images are representative of the following CAM-PDXs: H&amp;E n = 15, panCK n = 10, BAP1 n = 5, cCasp3 n = 5, Ki67 n = 9, &#x03b1;-SMA n = 5, CD4 n = 2, CD8 n = 2. A minimum of 3 sections per stain per sample were used. Scalebars in overview images represent 500 &#x03bc;m and in adjacent zoom images 50 &#x03bc;m (B).</p>
                </caption>
                <graphic id="gr11" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure11.gif"/>
            </fig>
            <fig fig-type="figure" id="f12" orientation="portrait" position="float">
                <label>
Figure 12. </label>
                <caption>
                    <title>Passaging of CAM-PDX.</title>
                    <p>Representative brightfield images of dissected CAM-PDX at embryonic day 14. Images show CAM-PDX generated from epithelioid mesothelioma tissue cryopreserved in high FBS (top, n = 3) or low FBS (bottom, n = 2) freezing media (P0) and the corresponding passaged CAM-PDX (P1; high FBS n = 2, low FBS n = 2). CAM-PDX imaged from underneath to highlight vascularization. Scale bars represent 2.5 mm.</p>
                </caption>
                <graphic id="gr12" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure12.gif"/>
            </fig>
            <p>To visualize viable mesothelioma cells within the CAM-PDXs 
                <italic toggle="yes">in ovo</italic>, we required an imaging modality that is suitable for unlabeled tissue and we therefore utilized [
                <sup>18</sup>F]-FDG PET/CT. [
                <sup>18</sup>F]-FDG is a non-metabolizable glucose analogue widely used as a radiotracer in oncology, including mesothelioma (
                <xref ref-type="bibr" rid="ref35">Szlosarek 
                    <italic toggle="yes">et al.</italic>, 2013</xref>), as elevated glucose uptake is commonly observed in cancer cells due to the Warburg effect (
                <xref ref-type="bibr" rid="ref36">Tekade and Sun, 2017</xref>). PET imaging after intravenous administration of [
                <sup>18</sup>F]-FDG revealed tracer uptake (
                <xref ref-type="fig" rid="f13">
Figure 13A</xref>) in the CAM-PDX which were established from the same cryopreserved epithelioid tissue shown in 
                <xref ref-type="fig" rid="f8">
Figures 8</xref>-
                <xref ref-type="fig" rid="f11">11</xref>. [
                <sup>18</sup>F]-FDG uptake indicates that the CAM-PDXs were sufficiently well vascularized to accumulate administered substances, such as the radiotracer, from circulating blood, and that they are metabolically active. Quantification of the PET signal, reported as total accumulated SUV across the entire CAM-PDX (SUVacc), showed similar uptake in CAM-PDXs (Two Sample t-test, p = 0.76), irrespective of the cryopreservation media used (
                <xref ref-type="fig" rid="f13">
Figure 13B</xref>), suggesting that both freezing methods preserve viable tissue that can be reanimated for engraftment. Despite this, we recommend high FBS freezing media, as a higher percentage of nodules became vascularized and there is evidence of better resident immune cell preservation.</p>
            <fig fig-type="figure" id="f13" orientation="portrait" position="float">
                <label>
Figure 13. </label>
                <caption>
                    <title>PET/CT imaging of epithelioid mesothelioma CAM-PDX generated from cryopreserved tissue.</title>
                    <p>A, Representative reconstruction of [
                        <sup>18</sup>F]-FDG PET/CT imaging. Color scale represents tracer uptake (Bq/mL, Min = 0, Max = 2.5 &#x00d7; 10
                        <sup>4</sup>). Scalebar in overview image represents 1 cm and in inset image 2.5 mm. B, PET quantification of [
                        <sup>18</sup>F]
                        <sub>-</sub>FDG signal from CAM-PDX indicates no significant difference between fragments cryopreserved in high FBS (mean &#x00b1; SD = 30.52 &#x00b1; 32.35; n=14) or low FBS (mean &#x00b1; SD = 34.41 &#x00b1; 22.09; n = 9) media. Line represents population mean, Two Sample t-test, p=0.76, not significant (ns). Data was acquired from 5 independent experiments. Sample information and SUVacc values provided in 
                        <xref ref-type="table" rid="T9">
Table 9</xref>.</p>
                </caption>
                <graphic id="gr13" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/179975/2b091de6-29e3-45b1-ae39-ada1d7312915_figure13.gif"/>
            </fig>
        </sec>
        <sec id="sec19">
            <title>Use cases</title>
            <p>The CAM assay is a cost-effective, higher throughput preclinical model that can contribute to accelerating translation of 
                <italic toggle="yes">in vitro</italic> studies and the treatment discovery pipeline. With increased uptake of the CAM model in the research community, it will become more widely accepted as a direct replacement for the &#x2018;gold standard&#x2019; mouse model, therefore having a greater contribution to reducing the use of mammalian models. We propose that as the model is moderate throughput, drug evaluation can be conducted on first generation (P0) CAM-PDXs, potentially further reducing numbers, as it would remove the standard practice of serial passaging in mice. If one successful mouse PDX is typically passaged 5-times, using 5 mice each time, then the CAM-PDX model could theoretically reduce the number of animals used per PDX by 25. We expect the CAM-PDX model to be utilized for applications such testing combination therapies, formulations, drug delivery systems and novel treatment strategies. To ensure experimental rigor, we recommend that the study design should incorporate the appropriate controls such as blinding to any information relating to the sample and treatment condition, for all stages of experimental intervention, imaging and analysis.</p>
        </sec>
        <sec id="sec20" sec-type="conclusions|discussion">
            <title>Conclusions/Discussion</title>
            <p>We have shown that viable, vascularized mesothelioma CAM-PDXs can be generated from both fresh and frozen fragments of biopsy tissue, and that these are amenable to viability assessment using PET/CT imaging. Importantly, morphological and immunological features of the primary sample are retained, the latter being a key advantage over cell line-derived CAM xenografts and methods that involve disaggregation of patient derived material, particularly with the growing importance of immunotherapies. The inclusion of PET/CT readout is highly translational and relevant, since it is routinely used in the clinic to detect and stage cancer as well as monitor treatment response. Together the methods we describe will allow assessment of response to a broad range of therapies in an ethical model that provides an excellent recapitulation of human disease and allows systemic administration of drugs.</p>
            <p>We have established the feasibility of cryopreserving tissue prior to PDX generation bringing together several practical and 3Rs benefits, making these models more readily adoptable. For instance, when utilizing surplus material from diagnostic biopsies not all will be confirmed as cancer, indeed in our case only half of samples we collected were confirmed as mesothelioma. Careful tissue processing and cryopreservation enables histopathological confirmation of the cancer type prior to starting an experiment. Furthermore due to the heterogeneous nature of pleural mesothelioma, immunohistochemical pre-screening of the tissue to assess tumor cell content increases the chances of using tumor-cell rich regions. Although CAM xenograft models are non-protected up to embryonic day 14 (
                <xref ref-type="bibr" rid="ref37">The Animals (Scientific Procedures) Act 1986 Amendment Regulations, 2012</xref>) and more ethical than mouse xenograft models (
                <xref ref-type="bibr" rid="ref38">Ribatti and Annese, 2023</xref>), they are not truly animal-free. Therefore, the methodology adaptations we describe here are important to ensure that embryo development is only initiated when good quality and well characterized banked tissue is available for PDX engraftment.</p>
            <p>Our work is also applicable across other mesothelioma models that utilize patient tissue. In an era when therapeutic surgery is increasingly rare following publication of the MARS2 study (
                <xref ref-type="bibr" rid="ref39">Lim 
                    <italic toggle="yes">et al.</italic>, 2024</xref>), the tissue pre-screening workflow described here can be utilized for efficient generation of any patient-derived models from biopsy tissue, including 
                <italic toggle="yes">in vitro</italic> PDEs. In addition, where mouse PDX models are necessary, animal numbers can be reduced by ensuring only tissue confirmed as the cancer of interest, as well as tumor cell-rich regions are utilized. Freezing samples prior to engraftment also has the benefit of widening the availability of tissue, and therefore the appeal of the CAM-PDX model, to researchers who may be unable to readily obtain fresh tissue, for example due to a lack of local specialist hospitals or clinical collaborators.</p>
            <p>The CAM-PDX model sits between PDEs and mouse PDXs, offering a middle-ground between tractability, time scale and physiological relevance. A particular advantage over 
                <italic toggle="yes">in vitro</italic> methods is host-derived vascularization that is only achievable with 
                <italic toggle="yes">in vivo</italic> models. Moreover, the short experimental window of the CAM-PDX model means results can be available in weeks compared to the months required to obtain meaningful data from mouse PDX models. However, since there is only a 7-day window from engraftment to termination of the experiment using the CAM, animal models may still be required for longer term studies, for example if therapies require a prolonged treatment regime. Although the ability to maintain mouse PDX models for long periods does have drawbacks, for instance it allows more time for the human tissue to be infiltrated by host-derived cells. It is also common practice to passage mouse xenografts to extend study time and expand material (
                <xref ref-type="bibr" rid="ref14">Wu 
                    <italic toggle="yes">et al.</italic>, 2017</xref>). However, serial passaging can result in loss of human-derived stroma (
                <xref ref-type="bibr" rid="ref40">Julien 
                    <italic toggle="yes">et al.</italic>, 2012</xref>), immune cells and contribute to further colonization by mouse stromal components leading to a far less representative model over time (
                <xref ref-type="bibr" rid="ref41">Rosfjord 
                    <italic toggle="yes">et al.</italic>, 2014</xref>). Although we have shown transplanting CAM-PDXs is possible, there was no evidence for expansion of the material and given the limitations observed with passaging PDX in mice, researchers should carefully consider whether this is necessary.</p>
            <p>Here we describe in detail how to perform PET/CT to facilitate 
                <italic toggle="yes">in ovo</italic> assessment of unlabeled xenografts. Whilst PET allows us to visualize the xenografts, CT scans enable the precise localization of the region of interest. It also serves to apply attenuation correction in the PET images, which increases the accuracy of the quantification of radiotracer uptake. Although dynamic scanning allows detailed analysis of physiological processes, it is time-consuming and requires complex data processing. Combining static PET imaging with an efficient injection technique means up to 24 eggs can be scanned per day (8 working hours), only limited by the activity of the decaying radiotracer, making it a high-throughput preclinical screening tool.</p>
            <p>The experimental pipeline we describe has the potential to significantly accelerate the advancement of personalized medicine, as it could be utilized as a rapid avatar for treatment selection or establishing patient suitability for clinical trials (
                <xref ref-type="bibr" rid="ref42">Izumchenko 
                    <italic toggle="yes">et al.</italic>, 2017</xref>), as opposed to the slower, more costly and less ethical murine PDX models. The option to test treatments in a rapid manner using the CAM-PDX platform, where turnaround time can be weeks instead of months, is highly desirable for cancers with poor prognosis such as mesothelioma, where patients may only survive a few months after their diagnosis.</p>
            <p>We believe that these combined protocols for efficient tissue processing and the generation of CAM xenografts from mesothelioma tissue can significantly reduce requirements for mouse PDX models. Furthermore, due to the success rate of generating CAM-PDX from a range of cancers (
                <xref ref-type="bibr" rid="ref20">DeBord 
                    <italic toggle="yes">et al.</italic>, 2018</xref>) we envisage this model accommodating most solid cancer types, bringing wider impact in the reduction and replacement of murine models in cancer research. Additionally, due to the minimal requirement for expensive reagents or equipment, the CAM model can be easily adopted in standard research labs. As well as expanding to other cancer types, there is also scope for combining with other preclinical imaging such as magnetic resonance imaging (
                <xref ref-type="bibr" rid="ref8">Barnett 
                    <italic toggle="yes">et al.</italic>, 2022</xref>), adding alternative read-outs such as spatial profiling, or volatile organic compound analysis (
                <xref ref-type="bibr" rid="ref43">Little 
                    <italic toggle="yes">et al.</italic>, 2024</xref>), and investigating novel therapies (
                <xref ref-type="bibr" rid="ref44">Schulze 
                    <italic toggle="yes">et al.</italic>, 2023b</xref>) and delivery vehicles (
                <xref ref-type="bibr" rid="ref45">Butler 
                    <italic toggle="yes">et al.</italic>, 2022</xref>). Overall, the need for more accessible and physiological models of cancer, faster translation of therapies and the desire to reduce rodent model usage, makes the CAM-PDX model an attractive option.</p>
        </sec>
        <sec id="sec21">
            <title>Ethical considerations</title>
            <p>The collection and use of human tissue samples for this study was covered by the generic ethical approval granted to Mesobank &#x2013; a Research Tissue Bank, approved by East of England - Cambridge Central Research Ethics Committee (approved 9
                <sup>th</sup> August 2019, 18/EE/0161; renewed 30
                <sup>th</sup> August 2023, 23/EE/0139). Therefore, a separate REC approval for this project was not required. Patient samples were donated under written informed consent and collected between March 2021 and November 2024. All experiments using human tissue were conducted in accordance with the Declaration of Helsinki and in compliance with all local policies and standard operating procedures for working with human material. Samples stored and research performed at the University of Liverpool under licensing no. 12020 granted under section 16(2)(e)(ii) of the Human Tissue Act 2003.</p>
            <p>All experiments utilizing fertilized Hens&#x2019; eggs were terminated by embryonic day 14 (two thirds of the gestation period) meaning the model is classified as non-protected under 
                <xref ref-type="bibr" rid="ref37">The Animals (Scientific Procedures) Act 1986 Amendment Regulations 2012</xref> in the UK and therefore no Home Office approval was required. Standard operating procedures were reviewed and approved by the University of Liverpool Animal Welfare and Ethical Review Body.</p>
        </sec>
    </body>
    <back>
        <sec id="sec24" sec-type="data-availability">
            <title>Data availability</title>
            <p>The authors confirm that the data supporting this study are available within the article or via FigShare.</p>
            <sec id="sec25">
                <title>Underlying data</title>
                <p>FigShare: Methodology for generating chorioallantoic membrane patient-derived xenograft (CAM-PDX) models of pleural mesothelioma and performing preclinical imaging for the translation of cancer studies and drug screening, 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.28659185.v3">https://doi.org/10.6084/m9.figshare.28659185.v3</ext-link> (
                    <xref ref-type="bibr" rid="ref46">Schulze 
                        <italic toggle="yes">et al.</italic>, 2025</xref>).</p>
                <p>This contains the following:
                    <list list-type="bullet">
                        <list-item>
                            <label>-</label>
                            <p>Original CAM-PDX dissection images (.tiff
)</p>
                        </list-item>
                        <list-item>
                            <label>-</label>
                            <p>Original histology and immunohistochemistry images (.tiff
)</p>
                        </list-item>
                        <list-item>
                            <label>-</label>
                            <p>Supplementary movie 1 (.mov)</p>
                        </list-item>
                        <list-item>
                            <label>-</label>
                            <p>3D rendering of in ovo [
                                <sup>18</sup>F]-FDG PET shown in Figure 13A (.gif
)</p>
                        </list-item>
                        <list-item>
                            <label>-</label>
                            <p>Raw data used to calculate accumulated standardized uptake values in Figure 13A (.xslx)</p>
                        </list-item>
                        <list-item>
                            <label>-</label>
                            <p>Raw PET and CT acquisition files relating to Figure 13B (.DCM)</p>
                        </list-item>
                    </list>
                </p>
                <p>Data are available under the terms of the 
                    <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International license</ext-link> (CC-BY 4.0)</p>
            </sec>
        </sec>
        <ack>
            <title>Acknowledgements</title>
            <p>The Authors acknowledge use of the Egg Facility (RRID:SCR_026195), Centre for Preclinical Imaging (CPI; RRID:SCR_026605) and Histology SRF (processing, embedding, sectioning and H&amp;E staining; RRID:SCR_026606) all provided by Liverpool Shared Research Facilities (LIV-SRF), Faculty of Health and Life Sciences, University of Liverpool, as well as the Liverpool University Biobank (slide scanning). We thank Prof Robert Rintoul, Prof Stefan Marciniak and all the staff at Mesobank (funded by Victor Dahdaleh Foundation and the June Hancock Mesothelioma Research Fund) for facilitating access to tissue samples. We would also like to thank the following NHS Liverpool Heart and Chest Hospital staff for their support during this project: Magenta Black, Sijimole Chackochen, Lindsey Murphy, Nicola Tidbury and Joshua Preston, and most importantly the patients who kindly donated tissue.</p>
        </ack>
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    <sub-article article-type="reviewer-report" id="report386170">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.179975.r386170</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Clayton</surname>
                        <given-names>Stuart A.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r386170a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-6863-4822</uri>
                </contrib>
                <aff id="r386170a1">
                    <label>1</label>West Virginia University, Morgantown, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>24</day>
                <month>6</month>
                <year>2025</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2025 Clayton SA</copyright-statement>
                <copyright-year>2025</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport386170" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.163596.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This article from Schulze et al. demonstrates a novel method for producing mesothelioma patient-derived xenografts utilizing the chorioallantoic membrane of fertilized hen eggs. The CAM-PDX model may also be used with other types of cancer. The article describes the processing of patient tissue, validation of concordance between the original tissue and the passaged tissue, implantation of the tissue sample, and imaging of the CAM-PDX using PET/CT. Overall it is a thorough and well written article that offers an alternative approach to utilizing other PDX models in translational research while reducing the reliance on mammalian animal models.</p>
            <p> </p>
            <p> </p>
            <p> 
                <italic>Is the rationale for developing the new method (or application) clearly explained? </italic>
            </p>
            <p> 
                <bold>YES</bold>
            </p>
            <p> </p>
            <p> The primary rationale behind developing the CAM-PDX method is the potential to reduce animal usage in cancer studies and expedite the personalized medicine approach to drug screening, without losing the translational capability of similar models.</p>
            <p> </p>
            <p> A small grammatical note in the Introduction (first paragraph, line 3), BRAC1 is written instead of BRCA1, as it&#x2019;s written elsewhere in the article.</p>
            <p> </p>
            <p> 
                <italic>Is the description of the method technically sound?</italic>
            </p>
            <p> 
                <bold>YES</bold>
            </p>
            <p> </p>
            <p> Each section provides adequate detail to explain the methods.</p>
            <p> </p>
            <p> Verified all catalog numbers correctly correspond with the listed items in Table 1.</p>
            <p> </p>
            <p> Several sections use the term &#x201c;sterilization&#x201d; where the term &#x201c;disinfection&#x201d; is more technically accurate. Specifically, the &#x201c;Preparation of tissue samples for implantation, freezing or fixation for histology&#x201d; section (page 7, line 2 of that section); the &#x201c;Implantation&#x201d; section (page 9, lines 1 and 2 of that section). UV light is usually not sterilizing and ethanol is never sterilizing since they do not effectively kill endospores. Suggest changing to &#x201c;disinfection&#x201d; or offering alternative methods for sterilization.</p>
            <p> </p>
            <p> 
                <italic>Are sufficient details provided to allow replication of the method development and its use by others?</italic>
            </p>
            <p> 
                <bold>YES</bold>
            </p>
            <p> </p>
            <p> Sections are logically partitioned and easy to follow, and all necessary sections are provided.</p>
            <p> </p>
            <p> Several sections could be improved by providing further images/diagrams or if possible videos of key steps in the egg preparation and PDX implantation process. Many researchers are likely unfamiliar with using eggs and further visualization may help adoption of the protocol. Specifically, the &#x201c;Windowing&#x201d; and &#x201c;Implantation&#x201d; sections on page 9. These seem to be vital steps to actually carrying out the protocol and growing the PDXs. Brief videos covering these sections would be helpful to new researchers and they could be placed in the Figshare.</p>
            <p> </p>
            <p> 
                <italic>If any results are presented, are all the source data underlying the results available to ensure full reproducibility?</italic>
            </p>
            <p> 
                <bold>YES</bold>
            </p>
            <p> </p>
            <p> The figshare repository is described as containing supplementary data, and I confirmed that the data presented in the paper is actually available there. Additionally, all figures presented in the paper match the raw images in the Figshare repo.</p>
            <p> </p>
            <p> 
                <italic>Are the conclusions about the method and its performance adequately supported by the findings presented in the article?</italic>
            </p>
            <p> 
                <bold>YES</bold>
            </p>
            <p> </p>
            <p> The article provides data in support of the feasibility of the method and successful recapitulation of the mesothelioma samples where needed. But in a broader sense it demonstrates the use of the CAM-PDX system in studying cancers while maintaining similarity to the original patient tissue. I agree with the authors conclusions that the CAM-PDX system is a viable alternative to cell or animal models in studying some aspects of cancer.</p>
            <p> </p>
            <p> A suggestion for further validation of the model, if not already completed in other research articles, would be whole exome sequencing of the original patient tissue and passaged PDX to verify the retention of any key mutations which may be of particular importance when screening drugs and maintaining the personalized approach.</p>
            <p>Is the rationale for developing the new method (or application) clearly explained?</p>
            <p>Yes</p>
            <p>Is the description of the method technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions about the method and its performance adequately supported by the findings presented in the article?</p>
            <p>Yes</p>
            <p>If any results are presented, are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Are sufficient details provided to allow replication of the method development and its use by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>breast cancer, patient-derived xenografts, skeletal muscle, bioinformatics. 6+ years of experience working with cancer PDX animal models and performing pre-clinical imaging on them.</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
        <sub-article article-type="response" id="comment14335-386170">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Barnett</surname>
                            <given-names>Sarah</given-names>
                        </name>
                        <aff>LIV-SRF, University of Liverpool Faculty of Health and Life Sciences, Liverpool, England, UK</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>8</day>
                    <month>8</month>
                    <year>2025</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>We have amended the typographical error in the introduction (first paragraph, line 3).</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>We have updated the terminology from sterilized to disinfected in relation to the use of 70% ethanol for cleaning purposes. &#x201c;UV-sterilisation&#x201d; is commonly used and widely understood terminology however we have added &#x201c;germicidal irradiation&#x201d; for clarity.</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>We have created videos of the windowing and implanting procedure. These resources have been uploaded to Figshare and referenced in the text.</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>We agree that it would be useful to monitor genetic changes, and this is something we are doing in an ongoing project, but it is beyond the scope of this methods article.</italic>
                            </p>
                        </list-item>
                    </list>
                </p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report386165">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.179975.r386165</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Jarry</surname>
                        <given-names>Ulrich</given-names>
                    </name>
                    <xref ref-type="aff" rid="r386165a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-7961-0378</uri>
                </contrib>
                <aff id="r386165a1">
                    <label>1</label>Unit&#x00e9; de Pharmacologie Pr&#x00e9;clinique, Rennes, France</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>24</day>
                <month>6</month>
                <year>2025</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2025 Jarry U</copyright-statement>
                <copyright-year>2025</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport386165" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.163596.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The manuscript entitled " Methodology for generating chorioallantoic membrane patient-derived xenograft (CAM-PDX) models of pleural mesothelioma and performing preclinical imaging for the translation of cancer studies and drug screening" written by Schulze
                <sup> </sup>and and his colleagues is a study that describes the procedure to generated a CAM-PDX from mesothelioma.</p>
            <p> </p>
            <p> The manuscript is well written and really really nice to follow.</p>
            <p> </p>
            <p> I have no major but some minor points to discuss:</p>
            <p> </p>
            <p> Introduction section &#x2013; The authors state that 40 % of mouse experiments are carried out in non-GMO animals, such as xenografts. Personally, I think that many xenograft trials, i.e. transplanting human tumor cells into mice, are carried out in immunodeficient mice such as NSG mice, which are GMOs. I think the sentence needs to be revised.</p>
            <p> The authors specify that the model features immune cells. However, I would caution that the immune system is not functional and that the CAM-PDX model cannot be used to evaluate the efficacy of immunotherapy approaches.</p>
            <p> Material detailed in table 1. RPMI 1640 glutamax is indicated as being from Gibco, while other Gibco products are indicated as being from Fisher Scientific. Please harmonize identification.</p>
            <p> CAM-PDX scoring. Do you have the scoring criteria's ?</p>
            <p>Is the rationale for developing the new method (or application) clearly explained?</p>
            <p>Yes</p>
            <p>Is the description of the method technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions about the method and its performance adequately supported by the findings presented in the article?</p>
            <p>Yes</p>
            <p>If any results are presented, are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Are sufficient details provided to allow replication of the method development and its use by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Preclinical mouse model for oncology and immunology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
        <sub-article article-type="response" id="comment14334-386165">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Barnett</surname>
                            <given-names>Sarah</given-names>
                        </name>
                        <aff>LIV-SRF, University of Liverpool Faculty of Health and Life Sciences, Liverpool, England, UK</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>8</day>
                    <month>8</month>
                    <year>2025</year>
                </pub-date>
            </front-stub>
            <body>
                <p>
                    <list list-type="bullet">
                        <list-item>
                            <p>
                                <italic>In relation to the animal experiment statistics from the UK Home Office, the reviewer makes a fair point. Since mice can be immunodeficient due to genetic modification but others due to a random mutation and subsequent selective breeding, it is not actually clear which group(s) immunodeficient mice would be classified under by the Home Office, and therefore, we have updated the text accordingly.&#x00a0;</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>We agree with the reviewer that the chicken&#x2019;s immune system is developing and not fully functional at these stages. However, when we refer to immune cells in the PDX models, the assumption is that these cells are human-derived and were transplanted in from the patient. We have updated the text to make it clear that we are referring to patient-derived immune cells that have been transplanted with the PDX, not host-derived immune cells.</italic>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <italic>The CAM-PDX scoring criteria are outlined in the methods section. Xenografts were scored (yes/no) for the presence of radial vessels (top view image) and feeder vessels (bottom view image). An example of both is shown in Figure 3. We have also updated the text to clarify.</italic>
                            </p>
                        </list-item>
                    </list>
                </p>
            </body>
        </sub-article>
    </sub-article>
</article>
