<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="other" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.173178.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Case Study</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Assessing data management and compliance in large research collaborations via knowledge bases: &#x00a0;A semi-structured interview approach</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Mohammadi</surname>
                        <given-names>Maryam</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Politt</surname>
                        <given-names>Katja</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c2">b</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Jorschick</surname>
                        <given-names>Annett</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0009-0004-0776-7113</uri>
                    <xref ref-type="corresp" rid="c3">c</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Linguistics, Bielefeld University, Bielefeld, Germany</aff>
                <aff id="a2">
                    <label>2</label>Institut f&#x00fc;r Germanistik, Rostock University, Rostock, Germany</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:maryam.mohammadi@uni-bielefeld.de">maryam.mohammadi@uni-bielefeld.de</email>
                </corresp>
                <corresp id="c2">
                    <label>b</label>
                    <email xlink:href="mailto:katja.politt@uni-bielefeld.de">katja.politt@uni-bielefeld.de</email>
                </corresp>
                <corresp id="c3">
                    <label>c</label>
                    <email xlink:href="mailto:annett.jorschick@uni-bielefeld.de">annett.jorschick@uni-bielefeld.de</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>9</day>
                <month>1</month>
                <year>2026</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2026</year>
            </pub-date>
            <volume>15</volume>
            <elocation-id>37</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>17</day>
                    <month>12</month>
                    <year>2025</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2026 Mohammadi M et al.</copyright-statement>
                <copyright-year>2026</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/15-37/pdf"/>
            <abstract>
                <sec>
                    <title>Background</title>
                    <p>Large-scale research collaborations rely not only on robust research strategies but also on structured data management and systematic knowledge exchange. Ensuring compliance with ethical and legal requirements is essential from the beginning. This includes obtaining informed consent and adhering to data protection laws such as the GDPR (for Europe), as well as following Open Science and FAIR principles, particularly when working with personal data. Additionally, the systematic assessment and documentation of project objectives, data characteristics, and other project-specific features are essential for advancing the scientific contribution and long-term development of such collaborations.</p>
                </sec>
                <sec>
                    <title>Methods</title>
                    <p>In this paper, we introduce a methodology designed to identify commonalities across research projects and to enhance data governance within large research consortia. The approach consists of three components: (1) a semi-structured interview that served a dual purpose: first, to raise awareness among researchers regarding ethical obligations, data protection requirements, and open science principles; second, to systematically collect metadata on planned studies, data types, participant groups, and methodological procedures; (2) structured processing and organization of the collected information; and (3) visualization of project interrelations through knowledge graphs. The methodology was piloted within a collaborative research centre in linguistics.</p>
                </sec>
                <sec>
                    <title>Results</title>
                    <p>The collected metadata were systematically structured and used to construct knowledge graphs capturing interrelations among projects, data types, methodologies, and participant groups. These visualizations enable research consortia to make informed decisions about collaboration, infrastructure planning, and data reuse.</p>
                </sec>
                <sec>
                    <title>Conclusions</title>
                    <p>The proposed methodology offers a systematic way to assess data management practices, while also fostering a culture of compliance and transparency from the ground up. Knowledge graph visualizations provide a practical tool for identifying synergies, promoting data reuse, and strengthening transparency across projects. This approach can serve as a foundation for developing sustainable research infrastructures in consortia working with diverse empirical data.</p>
                </sec>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>data management</kwd>
                <kwd>data exchange</kwd>
                <kwd>knowledge graph</kwd>
                <kwd>open science</kwd>
                <kwd>structured data</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1">
                    <funding-source>Deutsche Forschungsgemeinschaft, CRC 1646</funding-source>
                    <award-id>512393437</award-id>
                </award-group>
                <funding-statement>This research has been funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)&#x2013; CRC 1646, project No 512393437, project INF. </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec id="sec5" sec-type="intro">
            <title>1. Introduction</title>
            <p>Establishing large-scale research collaborations, projects or research groups united by a common research question, requires the development of well-planned research strategies, as well as secure management, transfer, and long-term sustainability of generated knowledge and collected data 
                <xref ref-type="bibr" rid="ref9">Mittal (2023)</xref>. To foster and facilitate inter-project collaborations within such collaborations, it is essential to collect and systematically organize relevant metadata (e.g., data types, participant groups, methods of analysis) of the planned studies and systematically organize them to (1) provide a comprehensive overview of individual projects, (2) highlight their interconnections and thereby, (3) facilitate possibilities for data sharing and reuse across projects.</p>
            <p>It is crucial to highlight the importance of these topics early, especially when working with data collected from humans, as compliance with European law regulations (
                <xref ref-type="bibr" rid="ref5">GDPR, 2016</xref>) is mandatory when handling personal data. Transferring such knowledge to projects ensures adherence with ethical guidelines, including understanding the principles of informed consent, developing consent forms, submitting ethics applications, and promoting Open Science principles such as the FAIR principles 
                <xref ref-type="bibr" rid="ref13">Wilkinson et al. (2016)</xref>. Moreover, raising awareness of legal obligations within projects is essential. This includes informing researchers about 
                <italic toggle="yes">Record of Processing Activities</italic>, a key requirement of the General Data Protection Regulation (Art. 30, 
                <xref ref-type="bibr" rid="ref5">GDPR, 2016</xref>), as well as the 
                <italic toggle="yes">Technical and Organizational Measures</italic>, which must be implemented to protect personal data (Art. 32, 
                <xref ref-type="bibr" rid="ref5">GDPR, 2016</xref>). An early assessment of relevant information serves to (1) raise researchers&#x2019; awareness of legal and data sharing considerations, (2) identify knowledge resources and gaps, and (3) uncover potential connections between projects and resource-sharing opportunities.</p>
            <p>The structured collection and integration of project-level metadata can serve as a strategic tool to strengthen collaboration and inform the future development of the research consortium. Constructing knowledge graphs of these metadata help to make methodological, linguistic, and participant-related commonalities and differences across projects visible, thus supporting evidence-based decisions about coordination, shared resources, and infrastructure planning. Especially within large research consortia, this enables researchers and coordinators to identify meaningful connections between projects, foster interdisciplinary exchange, and reduce redundant efforts, thereby increasing both scientific impact and operational efficiency.</p>
            <p>This paper outlines an approach to addressing these challenges and introduces a methodology for systematically collecting, restructuring, and visualizing relevant information and metadata. We developed and conducted a semi-structured interview protocol used across all research projects within a large Collaborative Research Centre (CRC) in linguistics in Germany. They were conducted as part of the infrastructure project (INF), which is meant to ensure the &#x201c;systematic management of data relevant in the context of the Collaborative Research Centre [&#x2026;] intended to facilitate scientific synergies [&#x2026;] through shared data platforms and/or communication forums as well as through efficient use of data.&#x201d; (form 50.06, 
                <xref ref-type="bibr" rid="ref4">Forschungsgemeinschaft, 2022</xref>, p. 10&#x2013;11). Based on the knowledge gained from the interviews, INF is developing a metadata infrastructure platform designed to handle the management, storage, (re-)use, and sharing of the diverse empirical linguistic data collected within the CRC (
                <xref ref-type="bibr" rid="ref7">Jorschick et al., 2024</xref>). Many data types contain personal information or sensitive health data, which imposes legal and ethical constraints on this project (
                <xref ref-type="bibr" rid="ref3">Berez-Kroeker et al., 2022</xref>). However, the careful collection, processing, and visualization of this information and its interconnections, as described here, constitute the first steps toward the construction of this platform. The interviews outlined in the following sections lay the groundwork for these objectives.</p>
            <p>The interviews covered key aspects of data collection, management, storage, protection, reuse, and sharing. Additionally, they served to raise awareness among project researchers regarding legal and technical aspects, evaluated existing knowledge, and helped define training priorities. Subsequently, the collected information was transcribed, filtered for relevance, and systematically structured before being used to build a knowledge base and to visualize interconnections through knowledge graphs.</p>
            <p>In what follows, we first describe the development and implementation of the semi-structured interviews, with the full list of questions provided in Appendix A. The subsequent outlines the processing and (re-)coding of the data to construct a knowledge base and visualization of relevant information.</p>
        </sec>
        <sec id="sec6">
            <title>2. Developing and conducting the interviews</title>
            <p>The development of the interview questions and methodology was based on the goals of the INF project outlined in the previous section. In this section, we first describe the development and piloting of the interview questions, followed by a description of how the interviews were conducted.</p>
            <sec id="sec7">
                <title>2.1 Preparation</title>
                <p>In the preparation phase, the interview questions were designed by first reviewing the project proposals to identify possible groupings of projects in regards to e.g., the kind of data they work with or the type of analysis they plan to run. Additionally, the goals of the interview were defined clearly in order to develop an effective interview schedule that ensured we could collect rich data on the topics the INF project was interested in (
                    <xref ref-type="bibr" rid="ref2">Bearman, 2019</xref>). Questions were grouped by their general topic to make the conversation flow more naturally during the interviews. The questions were designed for a semi-structured interview (SSI), c.f. e.g., 
                    <xref ref-type="bibr" rid="ref8">Karatsareas (2022)</xref>, which contains both closed (e.g., 
                    <italic toggle="yes">Are there any PIs in your project that are not from Own University Name</italic>?) and open questions (e.g., 
                    <italic toggle="yes">How do you plan to analyse your data? Are special analysis methods required</italic>?) or a combination of both (e.g., 
                    <italic toggle="yes">If you are running experiments: Do you plan to compensate your participants? If so, how?</italic>).</p>
                <p>This led to the development of the following sets of questions:
                    <list list-type="order">
                        <list-item>
                            <label>1.</label>
                            <p>general requirements for data management and data protection,</p>
                        </list-item>
                        <list-item>
                            <label>2.</label>
                            <p>data collection and documentation,</p>
                        </list-item>
                        <list-item>
                            <label>3.</label>
                            <p>data storage, processing, and analysis,</p>
                        </list-item>
                        <list-item>
                            <label>4.</label>
                            <p>archiving and reuse according to FAIR principles
                                <xref ref-type="fn" rid="fn1">
                                    <sup>1</sup>
                                </xref>
                            </p>
                        </list-item>
                        <list-item>
                            <label>5.</label>
                            <p>required support from the INF project, and</p>
                        </list-item>
                        <list-item>
                            <label>6.</label>
                            <p>space for additional comments or questions.</p>
                        </list-item>
                    </list>
                </p>
                <p>Each set consisted of several questions, which can be found in full in the appendix of this paper. The following example consists of the questions regarding (1) general requirements for data management and data protection.
                    <list list-type="alpha-lower">
                        <list-item>
                            <label>(a)</label>
                            <p>Are there any PIs in your project that are not from 
                                <italic toggle="yes">Own University Name</italic>? If not, are there any collaborators from other universities that you are planning to share personal data with?</p>
                        </list-item>
                        <list-item>
                            <label>(b)</label>
                            <p>Who is responsible for the data management in the project?</p>
                        </list-item>
                        <list-item>
                            <label>(c)</label>
                            <p>What type of data does the project work with (audio, video, text generation, perception, ratings, etc.)?</p>
                        </list-item>
                        <list-item>
                            <label>(d)</label>
                            <p>If you are running experiments: How many experiments do you plan to run?</p>
                        </list-item>
                        <list-item>
                            <label>(e)</label>
                            <p>If you are running experiments: Who are your target participants (children, elderly, clinically-oriented, etc.)?</p>
                        </list-item>
                        <list-item>
                            <label>(f
)</label>
                            <p>If you are running experiments: Do you plan to compensate your participants? If so, how (cash, voucher, course credit; on site, via third party)?</p>
                        </list-item>
                        <list-item>
                            <label>(g)</label>
                            <p>Do you have personal, pseudonymized, or anonymous data? (Note that this can change depending on the stage of the project)</p>
                        </list-item>
                        <list-item>
                            <label>(h)</label>
                            <p>What language are you working on? Have you considered offering a consent form in that language (other than English and German), too?</p>
                        </list-item>
                    </list>
                </p>
                <p>These questions can be used as an example how the SSI was meant to guide researchers through the whole project development and setup phase. In the beginning, the projects are supposed to write data management plans and to think about what data they need, whether they plan on collecting personal data or data from vulnerable groups, and how often they want to collect data. 
                    <xref ref-type="table" rid="T1">
Table 1</xref> gives an overview of the alignment of the interview goals with the questions asked, i.e., the association between questions, schedule, and rationale suggested by 
                    <xref ref-type="bibr" rid="ref2">Bearman (2019)</xref>.</p>
                <table-wrap id="T1" orientation="portrait" position="float">
                    <label>
Table 1. </label>
                    <caption>
                        <title>Interview schedule illustrating the correspondence between interview questions and their rationale.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Question</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Rationale</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Are there any PIs in your project that are not from Own University Name? If not, are there any collaborators from other universities that you are planning to share personal data with?</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To elicit whether any sharing of data under special regulations between universities/countries is planned.</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Who is responsible for the data management in the project?</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To (i) ensure that projects are aware of responsibilities and (ii) to have one contact person in the project.</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">What type of data does the project work with (audio, video, text generation, perception, ratings, etc.)?</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To (i) elicit data types, (ii) connect projects working with similar data, and (iii) become aware of special needs e.g. in regard to data protection, anonymization, analysis, or storage.</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">If you are running experiments: How many experiments do you plan to run?</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To ensure projects have a clear experimental plan.</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">If you are running experiments: Who are your target participants (children, elderly, clinically-oriented, etc.)?</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To ensure data of vulnerable groups are adequately protected.</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">If you are running experiments: Do you plan to compensate your participants? If so, how (cash, voucher, course credit; on site, via third party)?</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To ensure projects are aware of data protection measures for e.g. collecting signatures or bank details.</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">Do you have personal, pseudonymized, or anonymous data? (Note that this can change depending on the stage of the project)</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To (i) elicit whether data protection measures for personal data apply and to (ii) raise awareness of storage needs, e.g. not to store pseudonymization key lists in the same place as pseudonymized data.</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">What language are you working on? Have you considered offering a consent form in that language (other than English and German), too?</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">To (i) connect projects working on the same languages and (ii) to ensure participants are given consent forms in an appropriate language.</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <p>The table presents the correspondences between an example set of SSI questions and the rationale behind asking the questions.</p>
                    </table-wrap-foot>
                </table-wrap>
                <p>The table presents the correspondences between an example set of SSI questions and the rationale behind asking the questions. Sending the list of questions to the projects beforehand ensured that they had talked about their plans and responsibilities and were able to ask clarifying questions during the interview itself.</p>
                <p>Although the later analysis does not directly process any personal data, project details can be easily inferred due to the known identities of individuals involved in the projects. Therefore, ethics approval from the university ethics committee was obtained before starting the interviews. All projects signed a written consent form prior to their interview session, which detailed the data handling procedures (see Ethics statement).
                    <xref ref-type="fn" rid="fn2">
                        <sup>2</sup>
                    </xref>
                </p>
                <p>After reviewing the initial project proposals, we conducted a pilot phase involving three projects: one that required special data protection measures for sensitive health data from participants with aphasia, one working with written corpus data free of copyright constraints, and one handling pseudonymized or anonymized experimental data from psycholinguistic studies.</p>
                <p>Following the pilot phase, we revised the list of questions based on feedback from the pilot projects and the interviewers&#x2019; experience. Although individual questions remained unchanged, we reordered some to improve conversational flow (see Appendix A for a full list of questions). Subsequently, we contacted all remaining projects except one, which has no research objectives but a coordinating function, via email. The email outlined the interviews&#x2019; objectives and included the questionnaire as well as the consent form for prior within-team review. Projects were given the opportunity to ask clarifying questions prior to choosing a time slot. Each project selected a two-hour slot from a predefined list via the non-tracking planning tool, 
                    <ext-link ext-link-type="uri" xlink:href="https://digitalcourage.de/about-nuudel">Nuudel</ext-link>. We, very generously, allotted two hours per interview to accommodate any additional questions arising during the discussion. SSIs typically last no longer than one hour, and later we will see that this was almost always the case indeed. The two-hour window also accounted for potential technical issues in hybrid setups or delays caused by traffic.</p>
            </sec>
            <sec id="sec8">
                <title>2.2 Conducting the interviews</title>
                <p>Interviews were conducted on-site or in a hybrid format, depending on project members&#x2019; availability, with one interview held entirely online. In total, sixteen projects were interviewed. Project teams were encouraged to participate fully, and at least one principal investigator (PI) was required to attend to ensure representation by a member responsible for the project. When scheduling conflicts prevented individual project members from attending, teams discussed the questions beforehand to ensure all attendees were informed of their colleagues&#x2019; perspectives.</p>
                <p>At least two INF project members conducted each interview, except in three cases where illness reduced participation to one. In sessions with two INF members present, one led the interview and took notes, while the other provided support and posed follow-up questions. We held sessions in a dedicated meeting room using a 360&#x00b0; video conferencing device (Meeting Owl 3) with Zoom for hybrid formats, to ensure high audio quality and seamless on-site and remote participation.</p>
                <p>At the start of each interview, participants were reminded of the interview&#x2019;s purpose, and it was confirmed that the consent form was understood and signed by a project leader. The interview procedure and note-taking process were explained, and participants could ask clarifying questions in advance. The interview questions were then discussed in chronological order as listed in Appendix A. If necessary, discussions shifted to other relevant questions, which each of these shifts to another question mentioned explicitly by the interviewer. Although written responses were not mandatory, teams were strongly encouraged to review questions in advance and ensure the members familiar with data management and analysis.</p>
                <p>One interviewer took real-time notes directly in a GitLab markdown file, which were later reviewed for typographical errors and then forwarded to each project for validation of contents. All subsequent corrections and comments were incorporated into GitLab directly to ensure version control. Most interviews lasted between 60 and 75 minutes; the shortest was 45 minutes and the longest two hours. Sessions with projects with sensible data and a large number of international collaborations took longer than e.g., interviews with projects who do not elicit data from participants but work with data from existing corpora without any copyright restrictions.</p>
            </sec>
        </sec>
        <sec id="sec9">
            <title>3. Building a knowledge representation</title>
            <p>The qualitative insights from the interview notes were particularly valuable in informing research teams about essential (data management) rules and strategies to consider during their studies. Furthermore, the interviews produced rich datasets and metadata from the individual projects, offering resources for identifying potential collaborative opportunities and enhancing data reusability across teams.</p>
            <p>These opportunities are not typically apparent at the surface level, as projects often appear independent and disconnected from one another, making their potential interrelations unclear. However, through deeper investigation into various dimensions of each project, such (indirect) connections can be uncovered, revealing avenues for future collaboration and integrated research efforts.</p>
            <p>To systematically represent and explore this information, we employed knowledge graphs, structured frameworks that model entities (in this case, individual projects) as nodes and their relationships as edges. This approach enables the organization and integration of data sources, revealing indirect or hidden connections. Knowledge graphs facilitate semantic search, enrich data exploration, and simplify decision-makings by surfacing relationships that may not be immediately apparent.</p>
            <p>The next section outlines the development of the coding schema and the process of transforming descriptive interview notes into a structured dataset. We then present illustrative examples of the resulting knowledge graphs.</p>
            <sec id="sec10">
                <title>3.1 Data processing and coding scheme development</title>
                <p>The coding schema was developed after completing all interviews, ensuring consistency across the dataset. In the first step, we filtered the data by excluding entries that did not offer generalizable insights applicable to other projects, including: (i) personal data that may change, e.g., the designated data steward of the projects, (ii) information that has not yet been finalized, such as archiving processes, and (iii) items primarily intended to inform teams about essential (data management) rules and strategies, such as completing specific data protection forms or procedures.</p>
                <p>In the second step, we constructed a structured dataset from the remaining information, assigning one column to each data point. The coding scheme was developed based on questions concerning both the data and metadata that the projects intended to engage with. For instance, it included questions about the type of data being used (e.g., 
                    <italic toggle="yes">audio, video, text generation</italic>), participant type (e.g., 
                    <italic toggle="yes">children, adults, elderly, autistic individuals</italic>), and the languages used in experiments (e.g., 
                    <italic toggle="yes">English, German, Farsi</italic>). 
                    <xref ref-type="table" rid="T2">
Table 2</xref> presents a toy example of the dataset (for details, in Appendix B).</p>
                <table-wrap id="T2" orientation="portrait" position="float">
                    <label>
Table 2. </label>
                    <caption>
                        <title>The dataset schema.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="left" colspan="1" rowspan="1" valign="top">Project ID</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Area</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">DataType</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Language</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">ParticipantTypes</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">Collaborators</th>
                                <th align="left" colspan="1" rowspan="1" valign="top">
Identification</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">X00</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">A</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Audio; Rating</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">English; German</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Adults</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Y01; X05</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Unanonymized</td>
                            </tr>
                            <tr>
                                <td align="left" colspan="1" rowspan="1" valign="top">X01</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">B</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Rating; Video</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">German; English; Farsi</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Adults; Children</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">X02; Z05; Y02</td>
                                <td align="left" colspan="1" rowspan="1" valign="top">Pseudonymized</td>
                            </tr>
                        </tbody>
                    </table>
                    <table-wrap-foot>
                        <p>The table presents a toy example of the dataset constructed from the interview notes.</p>
                    </table-wrap-foot>
                </table-wrap>
                <p>In the third step, we established a set of rules to ensure consistent and dynamic data conversion, trying to create a machine- and human-readable dataset, as well as allowing new data to be added without requiring modifications to the analysis code. The coding schema followed the standardized.csv format, in which columns are separated by commas (,). For columns containing multiple values (e.g., 
                    <italic toggle="yes">Language</italic>) individual values were separated by semicolons (e.g., 
                    <italic toggle="yes">English;German</italic>). During the visualization stage (see the next section), semicolon-separated values were dynamically converted into lists to support analytical tasks. Since the analysis scripts handled these conversions automatically, the order of values was inconsequential. For instance, entries such as &#x201c;
                    <italic toggle="yes">English;German</italic>&#x201d; and &#x201c;
                    <italic toggle="yes">German;English</italic>&#x201d; in the 
                    <italic toggle="yes">Language</italic> column were treated as equivalent.</p>
                <p>We avoided abbreviations and ensured that column names and values were meaningful and easy to interpret in the generated graphs and analysis. Furthermore, we introduced meaningful placeholder values such as 
                    <italic toggle="yes">None</italic> and 
                    <italic toggle="yes">NotApplicable</italic> to prevent empty entries in the dataset. These placeholders helped maintain data consistency and avoid potential issues of white-spaces in data analysis (see also the description of the data cleaning in next section).</p>
                <p>The dataset was designed with three types of columns: (i) Open Values, where no predefined list of values was specified, allowing annotators to add entries dynamically during data conversion. For example, the 
                    <italic toggle="yes">Language</italic> column included a list of languages extracted from interview notes. (ii) Exhaustive Values, which had a fixed set of predefined values. For instance, the 
                    <italic toggle="yes">Identification</italic> column was limited to the values {
                    <italic toggle="yes">anonymized, unanonymized, pseudonymized</italic>}. (iii) Non-Exhaustive Values, where an initial set of predefined values was provided, but the list could be expanded as needed. For example, the 
                    <italic toggle="yes">DataType</italic> initially included {
                    <italic toggle="yes">audio, video, text, rating</italic>}, but new values could be added during the conversion. An overview of these types of columns is provided in 
                    <xref ref-type="table" rid="T2">
Table 2</xref>.</p>
                <p>This approach ensured that the dataset remained adaptable, enabling projects to incorporate new data without requiring changes to the dataset structure or the accompanying (
                    <italic toggle="yes">R</italic>) coding scripts. The scripts were designed to dynamically integrate newly added values into the visualizations (see the next section). Finally, the interviewer who initially took the notes during the meetings converted them into a structured dataset, following the schema and rules outlined above. This approach ensured both consistency and accuracy in the resulting dataset.</p>
            </sec>
            <sec id="sec11">
                <title>3.2 Creating the knowledge graphs</title>
                <p>The interviews conducted contributed not only to the conceptual development of the data management software but also served as the foundation for building knowledge bases for the projects. These knowledge bases enable researchers to identify potential connections between projects and uncover opportunities for resource sharing opportunities, within their current studies or in future collaborations. This approach helps minimize redundant efforts by reducing the need to conduct new experiments when relevant data has already been collected by other teams, ultimately conserving both time and financial resources.</p>
                <p>Data analysis was conducted using 
                    <italic toggle="yes">R Studio</italic> (Version 2024.12.0+467) (
                    <xref ref-type="bibr" rid="ref12">R studio team, 2025</xref>). First, we developed a script to dynamically convert multi-value columns into individual rows, restructuring it into long format. Next, a data-cleaning step was performed to eliminate empty columns and rows. Although placeholders like 
                    <italic toggle="yes">None</italic> were used to fill empty fields, empty values could still result from inadvertent whitespaces in semicolon-separated columns, despite the annotators&#x2019; efforts to avoid spaces within or at the end of lists. Finally, we generated several knowledge graphs from the processed dataset, using the 
                    <italic toggle="yes">visNetwork</italic> package (Version 2.1.2) (
                    <xref ref-type="bibr" rid="ref1">Almende B.V. and Contributors and Thieurmel, 2025</xref>).</p>
                <p>The following sample graphs were generated using 
                    <italic toggle="yes">visNetwork</italic> function, with 
                    <italic toggle="yes">ProjectID</italic> as the list for nodes in relation to other entities, such as 
                    <italic toggle="yes">Collaborators</italic>, 
                    <italic toggle="yes">Language</italic> or 
                    <italic toggle="yes">ParticipantType</italic>, represented as edges. The default &#x201c;
                    <italic toggle="yes">barnesHut</italic>&#x201d;&#x2019; solver in the 
                    <italic toggle="yes">visPhysics</italic> setting was employed, which positions nodes by approximating the forces between distant nodes, rather than computing pairwise interactions, thereby optimizing computational efficiency. This means that for the visualizations in the following figures, spatial proximity does not imply closer relationships between projects. For a zoomable and interactive version of the graphs, please see 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.17605/OSF.IO/PMWYB">OSF</ext-link>.</p>
                <p>
                    <xref ref-type="fig" rid="f1">
Figure 1</xref> represents a knowledge graph illustrating the interconnections among projects. In this visualization, nodes (circles labelled with project numbers) represent individual projects, while edges denote research collaborations. Projects are color-coded according to their respective research areas (A, B, C) to enhance visual distinction. Edges are represented by arrows, indicating either unidirectional or bidirectional collaborative relationships. The number of arrows connected to a node reflects the extent of that project&#x2019;s involvement within the network; the more arrows, the more collaborative links it maintains. For example, project 
                    <italic toggle="yes">&#x00d6;</italic>, as the central project, is directly connected to nearly all other projects. While some projects primarily benefit from collaborating with 
                    <italic toggle="yes">&#x00d6;</italic>, others engage in reciprocal partnerships. Thus, the bidirectional edge between 
                    <italic toggle="yes">&#x00d6;</italic> and 
                    <italic toggle="yes">B04</italic> indicates mutual collaboration, whereas the unidirectional edge from 
                    <italic toggle="yes">&#x00d6;</italic> to 
                    <italic toggle="yes">A02</italic> suggests that the collaboration benefits 
                    <italic toggle="yes">A02</italic> without a reciprocal contribution.</p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>
Figure 1. </label>
                    <caption>
                        <title>Knowledge graph of projects interconnections.</title>
                    </caption>
                    <graphic id="gr1" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/190969/1c4e3b66-3d74-4003-a5a4-c602e42bb9ad_figure1.gif"/>
                </fig>
                <p>One advantage of this kind of visualization is that it can reveal &#x2018;intermediate projects&#x2019;, which might benefit from a collaboration with projects that already share an edge. One example for this is the connection between 
                    <italic toggle="yes">&#x00d6;</italic> and 
                    <italic toggle="yes">B05</italic> (cf. 
                    <xref ref-type="fig" rid="f1">
Figure 1</xref>). These two projects do not share an edge, meaning that they do not collaborate directly. However, they both share edges with 
                    <italic toggle="yes">C05</italic>, which is the intermediate project between them. Identifying such interconnections highlights potential for future collaborative opportunities.</p>
                <p>
                    <xref ref-type="fig" rid="f2">
Figures 2</xref> and 
                    <xref ref-type="fig" rid="f3">3</xref> illustrate the distribution of languages and participant types across the experimental projects. In large-scale collaborative researches, such metadata serve as valuable resources for other projects seeking data involving specific languages or particular participant groups. This facilitates the finding of relevant datasets and supports the identification of potential opportunities for data sharing and re-usability cross-project.</p>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>
Figure 2. </label>
                    <caption>
                        <title>Knowledge graph of working languages.</title>
                    </caption>
                    <graphic id="gr2" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/190969/1c4e3b66-3d74-4003-a5a4-c602e42bb9ad_figure2.gif"/>
                </fig>
                <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                    <label>
Figure 3. </label>
                    <caption>
                        <title>Knowledge graph of participant types.</title>
                    </caption>
                    <graphic id="gr3" orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/190969/1c4e3b66-3d74-4003-a5a4-c602e42bb9ad_figure3.gif"/>
                </fig>
                <p>A visualization like this can highlight both similarities and differences between projects. For example, two projects focusing on different languages may still have potential for collaboration if they both involve adult participants. Conversely, multiple projects working with the same language, e.g., 
                    <italic toggle="yes">Hungarian</italic>, share a common language, even if they involve different participant groups or study distinct phenomena. Thus, identifying these connections is crucial not only for tailoring support in areas such as ethical compliance or data management processes, but also for the development of an effective metadata schema for the data management platform (see Section 1).</p>
            </sec>
        </sec>
        <sec id="sec12" sec-type="conclusion">
            <title>4. Conclusion</title>
            <p>This paper presented a systematic approach to collecting, restructuring, and visualizing (meta) data of project methodology, data types, and requirements in a large CRC in linguistics. For this, the construction and implementation of a semi-structured interview was described. The goal of the interviews was twofold: First, they helped raise awareness among projects regarding legal, ethical, and technical aspects. The projects of the CRC process e.g., personal information or sensitive health data, imposing legal and ethical constraints on data management and processing. Second, the information in the interviews was transcribed and re-coded comprehensively via a coding scheme in order to develop a structured knowledge base of intra-CRC connections between projects. The dataset was converted into knowledge graphs, a structured visualization of information where entities (nodes) and their relationships (edges) were modelled to capture and organize knowledge. One of the key advantages of this visualization is its ability to reveal potential interconnections via intermediate projects, a benefit often overlooked in large-scale projects. In the future, we aim to refine the model into a conceptual framework by developing a relevant ontology based on specific knowledge bases. The ontology models will enhance the consistency and establish higher standards across a broader domain.</p>
            <sec id="sec13">
                <title>Limitations</title>
                <p>The method described here can be improved on by extending it to other research collaborations and thereby being able to highlight potential for additional collaborations. A further limitation is that we could not share the full dataset underlying the described method due to confidentiality constraints.</p>
            </sec>
        </sec>
        <sec id="sec14">
            <title>Ethical considerations</title>
            <p>The present study was reviewed and approved by the ethics committee of Bielefeld University on November 4th, 2024, ethics application number 2024-305. All participants provided their written informed consent to participate in this study.</p>
        </sec>
    </body>
    <back>
        <sec id="sec17" sec-type="data-availability">
            <title>Data availability</title>
            <p>The data underlying this study cannot be shared publicly due to confidentiality restrictions. Researchers may request access from the corresponding author
                <xref ref-type="fn" rid="fn3">
                    <sup>3</sup>
                </xref> and must provide institutional approval and ethics clearance to obtain the data.</p>
            <sec id="sec18">
                <title>Underlying data</title>
                <p>OSF: INF-Interviews-Graphs (2025). 
                    <ext-link ext-link-type="uri" xlink:href="https://osf.io/pmwyb/overview">https://osf.io/pmwyb/overview</ext-link> (
                    <xref ref-type="bibr" rid="ref10">Mohammadi et al., 2025</xref>)</p>
                <p>This project contains the following underlying data:
                    <list list-type="bullet">
                        <list-item>
                            <label>&#x2022;</label>
                            <p>INF-interview-R-codes.rmd. R Markdown script containing the statistics and graph-generation codes. Please note that the figures are generated by the script on a non-anonymized dataset, which cannot be shared due to confidentiality constraints.</p>
                        </list-item>
                        <list-item>
                            <label>&#x2022;</label>
                            <p>toy-interview-dataset.csv. Sample dataset template with illustrative toy example records. Please note that the sample dataset includes only illustrative examples, intended to replicate the methods outlined in the scripts.</p>
                        </list-item>
                        <list-item>
                            <label>&#x2022;</label>
                            <p>INF-interview-R-codes.html. HTML output of the R Markdown, displaying the resulting knowledge graphs.</p>
                        </list-item>
                    </list>
                </p>
            </sec>
            <sec id="sec19">
                <title>Extended data</title>
                <p>OSF: INF-Interviews-Graphs (2025). 
                    <ext-link ext-link-type="uri" xlink:href="https://osf.io/pmwyb/overview">https://osf.io/pmwyb/overview</ext-link> (
                    <xref ref-type="bibr" rid="ref10">Mohammadi et al., 2025</xref>)</p>
                <p>This project contains the following extended data:
                    <list list-type="bullet">
                        <list-item>
                            <label>&#x2022;</label>
                            <p>Appendix-A. list of the interview questions.</p>
                        </list-item>
                        <list-item>
                            <label>&#x2022;</label>
                            <p>Appendix-B. list of dataset columns used to convert the interviews into structured format.</p>
                        </list-item>
                        <list-item>
                            <label>&#x2022;</label>
                            <p>Supplementary Figure 1. knowledge graph illustrating projects interaction within CRC teams.</p>
                        </list-item>
                        <list-item>
                            <label>&#x2022;</label>
                            <p>Supplementary Figure 2. knowledge graph illustrating the languages used in the project&#x2019;s experiments within the CRC teams.</p>
                        </list-item>
                        <list-item>
                            <label>&#x2022;</label>
                            <p>Supplementary Figure 3. knowledge graph illustrating the types of participants in the experiments within the CRC teams.</p>
                        </list-item>
                    </list>
                </p>
                <p>Data are available under the terms of the 
                    <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons CC-By Attribution 4.0 International license</ext-link>.</p>
            </sec>
        </sec>
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                    <year>2016</year>;<volume>3</volume>:<fpage>160018</fpage>.
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                    <pub-id pub-id-type="doi">10.1038/sdata.2016.18</pub-id>
                    <pub-id pub-id-type="pmcid">PMC4792175</pub-id>
                </mixed-citation>
            </ref>
        </ref-list>
        <fn-group content-type="footnotes">
            <fn id="fn1">
                <label>
                    <sup>1</sup>
                </label>
                <p>The FAIR Guiding Principles for scientific data management and stewardship improve the 
                    <bold>f</bold>indability, 
                    <bold>a</bold>ccessibility, 
                    <bold>i</bold>nteroperability, and 
                    <bold>r</bold>euse of research data (
                    <xref ref-type="bibr" rid="ref6">GO FAIR Initiative, 2025</xref>). Making researchers aware of these principles early on is beneficial e.g. for ensuring that they think about metadata collection, possible licenses, and open formats in the early stages of their project lifecycle (
                    <xref ref-type="bibr" rid="ref11">Mons, 2018</xref>).</p>
            </fn>
            <fn id="fn2">
                <label>
                    <sup>2</sup>
                </label>
                <p>The interview process lasted approximately three months, from 18.11.2024 to 13.02.2025.</p>
            </fn>
            <fn id="fn3">
                <label>
                    <sup>3</sup>
                </label>
                <p>Please contact the corresponding author, 
                    <email xlink:href="mailto:maryam.mohammadi@uni-bielefeld.de">maryam.mohammadi@uni-bielefeld.de</email>, to discuss the possibility of sharing the dataset.</p>
            </fn>
        </fn-group>
    </back>
    <sub-article article-type="reviewer-report" id="report463095">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.190969.r463095</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Reichmann</surname>
                        <given-names>Stefan</given-names>
                    </name>
                    <xref ref-type="aff" rid="r463095a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1544-5064</uri>
                </contrib>
                <aff id="r463095a1">
                    <label>1</label>Graz University of Technology, Graz, Austria</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>23</day>
                <month>3</month>
                <year>2026</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2026 Reichmann S</copyright-statement>
                <copyright-year>2026</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport463095" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.173178.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The article describes a methodology designed for use by large research consortia to identify commonalities across research projects and to enhance data governance. The resulting visualizations enable research consortia to make informed decisions about collaboration, infrastructure planning, and data reuse. The proposed methodology offers a systematic way to assess data management practices, while also fostering a culture of compliance and transparency from the ground up. It consists of three components: 
                <list list-type="order">
                    <list-item>
                        <p>a semi-structured interview to a) raises awareness among researchers regarding ethical obligations, data protection requirements, and open science principles, and b), to systematically collect metadata on planned studies, data types, participant groups, and methodological procedures</p>
                    </list-item>
                    <list-item>
                        <p>structured processing and organization of the collected information; and</p>
                    </list-item>
                    <list-item>
                        <p>visualization of project interrelations through knowledge graphs.</p>
                    </list-item>
                </list> The methodology was piloted within a collaborative research centre in linguistics. The collected metadata were systematically structured and used to construct knowledge graphs capturing interrelations among projects, data types, methodologies, and participant groups.</p>
            <p> The methodology described in the paper has a clear practical remit. However, while the article describes a useful methodology and practical tool, I think it could profit from a deeper engagement with data management strategies of large-scale collaborations, as they are described by information science, sociology of science, and other fields, to make some of the claims of the paper sounder. In particular, the paper starts from the (correct) observation, described in the background section of the abstract, that large-scale research collaborations have specific needs with respect to data management. This diagnosis, while technically correct, seems a bit haphazard in that it is founded in a rather spurious engagement with the available literature. For instance, Christine L. Borgman (and others) have documented data sharing practices extensively, finding large variance across research settings in the ways research data are defined, produced, shared, reused, etc. Further, there is a large body of literature documenting large variance in data sharing practices, metadata practices, and RDM practices more generally, identifying discipline/field, region, and institution as the primary variables (among others). At present, the article proposes to organize the data collected with the interviews along a single dimension (commonalities and differences). While this may be enough to define a use case for the scientific knowledge graph developed, it is insufficient to reflect the breadth and depth of data-handling and management practices. I do agree that the resulting graph serves its intended purpose in principle, but in order to be useful it would need to account for the complexity of research data management which, I think, could have been derived from a deeper engagement with the vast empirical literature on the subject.</p>
            <p> Further, given that the methodology was piloted among linguistics consortia, as a reader I would expect to learn more about the specificities of linguistics data involved in the relevant projects. My concern here is mainly that the resulting methodology/tool might not be readily transposable to other fields. In addition, I would recommend spending more time on explicating the needs that follow from the literature review for the target group &#x2013; I am not (yet) convinced that large-scale collaborations of the sort described have any specific problems that require the described methodology to solve.</p>
            <p> Regarding the interviews, I was very taken by the claim that these served to &#x201c;raise awareness among researchers regarding ethical obligations, data protection requirements, and open science principles&#x201d;. Unless the authors have any evidence from the interview materials to back this up, I would recommend toning it down or removing it altogether. Table 1 explicates the &#x201c;rationale&#x201d; for each of the interview questions, but exposes a striking disconnect between the two for some cases; for instance, I don&#x2019;t think the first question represents its associated rationale clearly; nevertheless, it constitutes a good starting point for an interview about (meta)data practices, so I don&#x2019;t think anything is won by including the &#x201c;rationale&#x201d; table.</p>
            <p> Regarding the resulting knowledge graphs, I think they are easy to work with, but I would recommend thinking more deeply about the intended target audience for these knowledge graphs, what they are expected to use them for, and what benefits the authors expect for this group. In particular, the methodology promises to help research consortia &#x201c;assess data management practices&#x201d;; as a reader, I was left wondering, against which norms (of good RDM practice, presumably) does the methodology help assess RDM practices?</p>
            <p> Minor Points: Some of the in-text citations need to be fixed; in particular, when referring to an article without naming the author(s) in the text, the full citation (NAME YEAR) should be inside brackets.</p>
            <p>Is the case presented with sufficient detail to be useful for teaching or other practitioners?</p>
            <p>Yes</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Not applicable</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Is the background of the case&#x2019;s history and progression described in sufficient detail?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>Sociology of Science, Research Infrastructures, Open Science</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report451745">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.190969.r451745</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Mohr</surname>
                        <given-names>Alicia Hofelich</given-names>
                    </name>
                    <xref ref-type="aff" rid="r451745a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-7644-4105</uri>
                </contrib>
                <aff id="r451745a1">
                    <label>1</label>College of Liberal Arts, University of Minnesota, Minneapolis, Minnesota, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>3</day>
                <month>2</month>
                <year>2026</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2026 Mohr AH</copyright-statement>
                <copyright-year>2026</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport451745" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.173178.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This article describes an approach to capturing information about project commonalities, regulations, and tools using structured interviews with research teams. The interview responses are then converted to datasets, and visualized to reveal relationships and potential connections via knowledge networks.&#x00a0;</p>
            <p> </p>
            <p> While this article describes a helpful methodology and visualization tool for mapping features and relationships across projects, some of the methods and claims could be better clarified and/or supported to fully make them sound. &#x00a0;</p>
            <p> </p>
            <p> - The authors describe the interviews as benefiting individual projects/researchers by helping to raise awareness about legal, ethical, and technical aspects of the projects. However the questions asked would require more explicit education and connection to the rationale during the interview to be beneficial to the team. It is unclear whether the authors did this during the interview process. For example: &#x201c;do you have external collaborations&#x201d; would require quite a bit of explanation/follow up to help them identify other regulations or agreements that are required; asking who the participants are would also require several steps to ensure data involving vulnerable populations are adequately secured or restricted. It&#x2019;s not clear from the description if the interviewers provided education on these points during the interview or if they were merely collecting data. If no follow up or education was provided during the interviews, I would strongly recommend scaling back the descriptions of this benefit and instead focus on making connections across projects, rather than benefits to individual projects being interviewed. It would be helpful to have more information about the extent to which the rationale in table 1 was made known to the researchers when meeting. &#x00a0;</p>
            <p> </p>
            <p> - Did researchers or administrators from the center review the graphs that were produced? Was there particular things that were helpful to them or that were new knowledge? It is difficult to assess how much new information was revealed through these graphs versus being an alternative way to document known relationships/opportunities. This is especially important to clarify given the claims about the graphs revealing &#x201c;deeper&#x201d; information than would be available at the surface.&#x00a0;</p>
            <p> </p>
            <p> - There is a lot of speculation about helpful&#x00a0; connections in the graph (e.g., based on language or participant group), but it is unclear the extent to which those similarities translate into common metadata structures or resource uses. It would be helpful to have more specific examples of the applications mentioned and whether they are specific to this center or would be more broadly useful across more heterogeneous research groups.&#x00a0;</p>
            <p> </p>
            <p> </p>
            <p> Minor points:&#x00a0;</p>
            <p> - Are the graphs presented only of the exhaustive values? Were graphs or useful visualizations created for open and non-exhaustive values?&#x00a0;</p>
            <p> - What was the time spent on translating the interviews to the data format? Was there agreements or training involved in the coding?&#x00a0;</p>
            <p> - Interview timing not consistently reported - at end of section 2.1 said that typically lasted no longer than an hour; where as in 2.2 said the shortest was 45, most were between 60-75 (over an hour), and one was 2 hours.&#x00a0;</p>
            <p> - Appendix B on OSF has text cut off on the bottom</p>
            <p>Is the case presented with sufficient detail to be useful for teaching or other practitioners?</p>
            <p>Partly</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Not applicable</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Is the background of the case&#x2019;s history and progression described in sufficient detail?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Psychology, data management, reproducible research, institutional networks</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
</article>
