Density but not climate affects the population growth rate of guanacos ( Lama guanicoe) (Artiodactyla, Camelidae)

We analyzed the effects of population density and climatic variables on the rate of population growth in the guanaco ( Lama guanicoe), a wild camelid species in South America. We used a time series of 36 years (1977-2012) of population sampling in Tierra del Fuego, Chile. Individuals were grouped in three age-classes: newborns, juveniles, and adults; for each year a female population transition matrix was constructed, and the population growth rate (λ) was estimated for each year as the matrix highest positive eigenvalue. We applied a regression analysis with finite population growth rate (λ) as dependent variable, and total guanaco population, sheep population, annual mean precipitation, and winter mean temperature as independent variables, with and without time lags. The effect of guanaco population size was statistically significant, but the effects of the sheep population and the climatic variables on guanaco population growth rate were not statistically significant.

No population of any species can grow indefinitely, and population checks based upon different processes restrict population size and/or geographic distribution; these processes are either densitystabilizing or density-limiting 2 .The former are of a biotic nature and depend on the interaction between individuals of the same or different species, while the latter are independent of population size.
Stabilization results from density-dependence, with a regulatory effect that varies in intensity with the size or density of the population itself, however, not all density-dependent factors are densitystabilizing.The density-limiting factors can also be considered density-responsive because the per capita amount or availability of resources decreases as the population density increases.Thus, these two types of factors (density-stabilizing and density-limiting) rarely act independently: the density-limiting factors (generally of a physical and/or climatic nature), may determine the level at which populations become stabilized by the density-dependent processes, but they do not have a stabilizing capacity per se; for this reason many wildlife population dynamic and management models include the effects of climatic variables (e.g., Dennis & Otten, 2000; Colchero et al., 2009) 3,4 .
The guanaco is one of the two extant wild South American camelids, and ranges from Northern Peru through Chile, and across Patagonia to southern Argentina and Chile, reaching Tierra del Fuego.It is found from sea level to nearly 4500 m on the Andes mountain range, and occupies a wide variety of habitats from hardpan deserts to scrublands to grasslands 5 .
Although there are several studies on the population regulation processes in mammals in general 6,7 , and in ungulates in particular 8,11 , there are very few studies in wild South American camelids that analyze population growth regulation.There are several studies dealing with population dynamics of vicuña (Vicugna vicugna) [12][13][14] and guanacos [15][16][17] ; however none of them considered the effect of density, livestock and climate on population growth rate.
Thus, our purpose in this work was to test the hypothesis that population density, sheep stock, and climatic variables, affect the growth rate of the guanaco population from the island of Tierra del Fuego, Chile.

Study area
We analyzed the guanaco population of the "Cameron" ranch (-53.9 S, -69.3 W), with an area of the 2000 km 2 located in the Southern region of the Tierra del Fuego island, Chile.The altitude range is 0-300 m above sea level, and the ranch is a mosaic of steppe with fragments of forest; the latter is a deciduous forest (Nothofagus spp) while the steppe is composed of meadows, peats and prairies.The forested area is about 8.8% of the total study area, with some degree of forest clearance that offers adequate visibility for guanaco sampling.The guanaco is the dominant wild herbivore, while sheep are the dominant domestic species; densities of the latter have fluctuated in the last decades between 11 and 23 sheep/km 218 .
In contrast to the mainland, the puma (Puma concolor), the main predator of guanacos, is absent on the island; since 1977 guanaco hunting has been controlled by the Chilean National Forest Corporation (CONAF, according to its Spanish acronym) and the Chilean Agricultural and Livestock Service (SAG, according to its Spanish acronym).
The climate of the Tierra del Fuego island is characterized by an average annual precipitation of 200-400 mm, while in the forested areas the average precipitation fluctuates between 400-600 mm per year 1 .The average annual temperature is 6.5°C and the average winter temperature is 2.2°C.

Guanaco population sampling
Guanacos were counted for 34 consecutive years between 1977 and 2012 (except in 1986 and 1996), using the transect method with an undefined band width, from 1977 to 1995, and with a fixed width band from 1996 to 2012 (the latter with a maximum of 500 m to each side of the transect) [20][21][22] .The sampling methodology was changed by expert recommendation made in 1995 23 ; in 2000 the fixed and the undefined band width methods were applied simultaneously, we tested both results and found no significant statistical difference between them.The sampling period was carried out in the autumn and lasted approximately 7 days between 10:30 and 19:00 h, with two observers in two 4×4 vehicles going over the main, secondary and local roads at speeds slower than 40 km/h.Despite randomly selected transects being recommended 24 , preexisting roads were used because according to Soto (2010) 18 the existing system of roads is an adequate sample of the area.Each road was covered only once, and in addition to individual guanaco counts, the following were recorded: weather conditions, time, distance (km) from the starting point, GPS coordinates, observation distance from the transect (m) to guanacos, an estimate of the angle to the animal's position, and -when the animals were observed in

Amendments from Version 2
We have corrected some values in the sheep population, annual precipitation (P) and average winter temperature columns (Av winter temp) in Dataset 1, which has led to changes in the values entered in Table 1.The changes in values have not changed the significance of the results.We also addressed Pablo Acebes' comments, moving the justification of the analyses from the Results to the Methods.

REVISED
groups -the number of individuals, the type of social group, and its structure (sex, and the age class: newborn, juvenile and adult).Observation distances were made by naked eye.The road network and all geo-referenced observations were processed with the Arc View 9.3 Geographical Information System (GIS), and transferred using program Map Source ® .The cartography was kindly provided by the Chilean Agricultural and Livestock Service (SAG).
The population size was estimated as given in Soto 18 which was based on the King method modified by Leopold (1933)  25 described by Raedeke (1978)  19 , given by: where N is the total population to be estimated, A is the total study area, n is the total number of animals counted, x is the total transect distance covered (m) rounded to one meter, and y is the average of the perpendicular distance (m) from the transect to the animals counted (the factor of 2 is included to consider that there is one band to each side of the transect).The variance (S 2 ) was estimated by (2), with p = n/N, and used to estimate the 95% upper and lower confidence intervals.
Raedeke (1978) 19 claims that the Leopold method is valid when the following conditions are satisfied: (1) the road systems must be an adequate sampling of the study area, (2) the network road must be randomly distributed, and (3) the animals included in the sampling must be randomly distributed in relation to the observer's route and he considers that in the south of the Tierra del Fuego Island these assumptions are fulfilled.Soto 2010 18 compared population estimations by the Leopold and Distance methods and found that the value of the means estimate by Leopold methods fall within the confidence intervals estimated by Distance; additionally, as all sampling periods used the same methodology whatever bias might exist in the estimation of the mean abundance using the Leopold method, the relative changes among years (and thus the temporal trend) will be adequately represented; thus, we conclude that the Leopold's method seems adequate for our purposes 18 .
The area effectively surveyed in each sampling period was around 420 km 2 (about 20%, of the area under study).

Climatic variables
We evaluated the possible impact of two climatic variables on guanaco population growth rate: average annual precipitation (mm/year) and winter temperature (as the average of the temperatures of June, July and August, in °C).These climatic variables were selected because some studies suggested that they have an influence on guanaco demographic parameters:

Sheep population
The livestock effect was evaluated by considering the sheep population, based on time series data obtained from Soto (personal communication).Only eight years of data were available (1980, 1985,  1990, 1995, 2000, 2005, 2008 and 2011); as the sheep population change between years was relatively smooth, we interpolated linearly between two consecutive data points to generate a complete time series of 36 years.

Guanaco population analysis
We estimated the finite rate of increase (λ) as a measure of population growth rate for each of the 36 years of the guanaco data (population estimates were not available for years 1986 and 1996, and were linearly interpolated).To estimate λ we developed a three age-class (newborns, juveniles and adults) female-only matrix model, and estimated the matrix parameters by fitting the model predictions to the field total population estimates; we summed the three age classes and multiplied the result by two (guanacos have an approximately 50% sex-ratio).The fit was carried out in an Excel ® spreadsheet using the Solver tool, and the sum of squares (SSQ) as goodness of fit criterion (details can be found in Rabinovich and Zubillaga, 2012 27 ).This process resulted in a set of 36 population age-class structured matrices, and from each matrix we calculated the largest positive eigenvalue 28 as an estimate of λ, using the Pop-Tools add-in, an Excel program developed by Greg Hood (http:// www.cse.csiro.au/poptools/).

Population analysis
To test our hypothesis, we used a multiple regression analysis to check the relationship between the population growth rate (λ) as a dependent variable and guanaco population size (in natural logs), sheep population size (in natural logs), and climatic variables (annual mean precipitation in mm/year, and winter mean temperature in °C) as independent variables.In the case of the climatic variables we also evaluated the effects of various time lags (T), with T = 1 to 7 years for precipitation, and T = 1 year for winter temperature; the lags were applied by averaging the previous T lagged years, as suggested by Shaw et al. (2012) 13 for the vicuña population (these lagged variables were used in the regression analyses in addition to the non-lagged precipitation and winter temperature variables).The inclusion of time lags is convenient because it may detect possible cumulative climatic effects on ungulate population growth rates as has been observed in, for example, deer and moose 29 and in vicuñas 13 .The multiple regression was carried out using the statistical package "lm" of the RStudio software (Version 0.97.449-©2009-2012 RStudio, Inc.).Since for multiple regression analysis it is necessary to check that there is no collinearity (significant correlations among the predictor variables), we carried out a correlation analysis between independent variables, and used a p value < 0.05 to the per capita population growth rate decreases (Figure 1).The intercept of the regression line at λ = 1 (population at equilibrium) results in a population size of 103,000 guanacos (51 guanaco/km 2 ), which can be considered as an estimate of the carrying capacity of the Cameron ranch for this guanaco population.

Discussion
We were not able to confirm the expected effect of either climatic variables or sheep population on the population rate of growth (λ) in the guanaco population of the Cameron ranch.We expected an effect of climatic variables because Sarno et al. (1999) 17 found a relationship between winter weather and guanaco yearling's survival, and Rey et al. (2012) 26 recorded a negative effect of a severe drought on guanaco recruitment.Thus we anticipated that as winter temperature and/or annual precipitation decrease, the guanaco population growth rate might also decrease, as shown by Mech et al. 1987 29 with deer and moose.They also used a simple linear regression, and found that as winter snow accumulation increased, annual percentage change in population numbers decreased.With respect to sheep population, we also expected to find some type of relationship because this domestic herbivore is considered a competitor of the guanaco 30 for food and water.Our negative results are even more surprising because in the last 10-12 years of the time-series data the guanaco population fluctuated remarkably, determine statistical significance.We then, for each of those variables that were significantly correlated among them, ran the same multiple regression analysis but replaced the correlated variables individually; i.e., we did as many multiple regression analyses as correlated variables were found.We used the Akaike index (AIC) as a goodness of fit criterion for model selection.We also carried out a simple linear regression analysis using λ as the dependent variable and the variable that was most statistically significant as the independent variable, in order to compare this result with the full regression model (guanaco population, sheep population and climatic variables as independent variables) and evaluate the advantage of incorporating the other variables in the analyses.

Results
Data set 1 shows for each of the 36 years of guanaco sampling all the variables (dependent and independent) used in the regression analysis.Guanaco population abundance (individuals), lower and upper limits of the 95% confidence intervals (CI), sheep population abundance (individuals), estimated population annual rate of growth (λ), average annual precipitation (P; mm/year), and average winter temperature (degrees Celsius).Guanaco population values were not available for years 1986 and 1996, and were linearly interpolated (using the values of the previous and following years); sheep population values were only available for years 1980, 1985, 1990,  1995, 2000, 2005, 2008 and 2011; and the missing years were also linearly interpolated.
Data has been updated in following columns: sheep population [ranges of changed values are only for years : 1981-1984; 1986-1989;  1991-1994; 1996-1999; 2001-2004; 2006-2007, 2009-2010 Correlation analysis between the climatic variables showed a statistically significant correlation (p < 0.05) only among the precipitation variables for all the 1 to 7 year lags (but not with non-lagged precipitation), while the correlation results between all other independent climatic variables were not statistically significant.Thus, we ran seven regression analyses (each with each independent variables of lagged-precipitation).In all multiple regression analyses only the total population (LnNtot) was statistically significant.We show the results of the regression with precipitation lagged T = 7 because is the multiple regression that resulted most statistically significant (AIC = -85.09p < 0.017 and F = 3.154) (Table 1).
The negative slope of the regression equation is an indication of a density-dependent process, since when the population increases  suggesting some extraneous factor in addition to between population density, maybe climatic variables.It is well known that environmental effects are more important when the population size is near the carrying capacity, particularly in large mammals characterized by low reproductive rates, long life-spans, and populations that are resource-limited (features typical of species referred to as the "K-selected" species) 31 .The difference between our results and those of Sarno et al. (1999) 17 may reflect that these authors used the average winter snowfall while we considered average winter temperature.
The results of the guanaco population sampling suggest a certain trend in the population size, with a more or less exponential growth in the first few years, becoming more variable as the population grows, with more marked fluctuations during the last 10-12 years; this may imply that the population is becoming stabilized, possibly approaching its carrying capacity.On the other hand, the sampling results of those last 10-12 years show abrupt "jumps" in some years (for example 2004-2005) that may be the consequence of the mobility of guanacos from the Cameron ranch to neighboring sites and vice versa; since the transect sampling does not identify individuals the effects of possible local displacements could not be considered.
On the other hand the lack of effects of the sheep population size on the finite population growth rate (λ) in this guanaco population conforms well with a recent study 32 in Southern Chile that found that the potential competition between guanaco and sheep is low.
In contrast to our results, a study by Taper & Gogan (2002) 33 on the Yellowstone elk population, with weather variables included as covariates within a dynamic model, found that spring precipitation had a positive regression coefficient.
Contrary to what was expected based on the literature of ungulate population dynamics, weather variables do not seem to influence the density-dependent population growth rate of the Cameron ranch guanaco population.Our aim was to carry out a preliminary analysis that would help identify some of the regulatory processes in this guanaco population and so we used a simple multiple regression analysis as a first step in that direction.However, we note that in order to test the effects of climatic variables on population regulation of large ungulates such as the guanaco, the use of a population dynamic model would be recommended.A population dynamic model would better account for the interaction between densitydependent processes and weather variables than a simple multiple regression between the latter and guanaco population growth rate.

I have read this submission. I believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.
No competing interests were disclosed.

2.
analysis.The authors have adequately addressed each of these major issues in their response to referees -though readers should be aware of these limitations when interpreting the results of the study.

I have read this submission. I believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.
No competing interests were disclosed.F1000Research 6.

11.
Are the guanacos found both in the steppe and the forest biomes?
Please re-write the paragraph related to guanaco sampling through transect method in the consecutive periods (it is not clear enough).
Please remove information related to binoculars and GPS brands (did the authors use the same gadgets across 36 years?).
Explain the interest of using time lags (T) as covariables in the model.

Please add the Statistica version employed.
Please move explanations of the analyses perform from results to material & methods section.
I have read this submission.I believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.
No competing interests were disclosed.

Competing Interests:
Author Response 14 May 2014 , CONICET-UNLP, Argentina Maria Zubillaga "The background supporting the study, as it currently is a bit poor, in my view.The authors should explain more in detail, for example, which are the differences between the density-stabilizing and the density-limiting processes, or the evidence of including climatic variables when modelling population growth rate trends."After the following paragraph that was already in the original text: "No population of any species can grow indefinitely, and population checks based upon different processes restrict population size and/or geographic distribution; these processes are either density-stabilizing or density-limiting" We added the following paragraph explaining the differences between the density-stabilizing and the density-limiting processes.
"The former are of a biotic nature and depends on the interaction between individuals of the same or different species, while the latter are independent of population size.Stabilization results from density-dependence, with a regulatory effect that varies in intensity with the size or density of the population itself, however, not all density-dependent factors are density-stabilizing.The density-limiting factors can also be considered density-responsive because the per capita amount or availability of resources decreases as the population density increases.Thus, these two types of factors (density-stabilizing and density-limiting) rarely act independently: the density-limiting factors (generally of a physical and/or climatic nature), may determine the level at which populations become stabilized by the density-dependent processes, but they do not have a stabilizing capacity per se; for this reason many wildlife population dynamic and management models include the effects of climatic variables (e.g., Dennis & Otten, 2000; Colchero et al., 2009)   ".

3,4
In relation with the "poaching" the following paragraph was incorporated in section "Study area" to justify why this variable was not considered in our study: "In contrast to the continent, the puma (Puma concolor), the main predator of guanacos, is absent in the island; since 1977 the guanaco hunting has been controlled by Chilean National Forest Corporation (CONAF, according to its Spanish acronym) and the Chilean Agricultural and Livestock Service (SAG, according to its Spanish acronym)." In relation to the suggestion to incorporate livestock in the analysis, we re-analyzed our multiple regression incorporating the variable livestock as sheep population.We re-processed the regressions incorporating the sheep population as a new independent variable as a possible predictor of the guanaco population growth rate (l); so our new analysis increased from 5 to 6 independent variables: sheep population, guanaco population size, winter temperature, winter temperature with a lag of 1 year, annual precipitation, annual precipitation with a lag of 3 years.Our main results didn't change and it was confirmed that only the guanaco population size seems to have an effect on the population growth rate (l).These changes can be found in the "Methods" and in the "Results" sections.

F1000Research
of the ranch to ensure that all areas were visible to census-takers along their transects?I am not sure if that could be a source of error, but authors should discuss this point." In the Section "Guanaco population sampling" we added the following paragraphs where we explain the motive of the change and justify the transects chosen: "The sampling methodology was changed by an expert recommendation made in 1995 ; as in year 2000 the fixed and the undefined band width methods were applied simultaneously, we tested both results and found no significant statistical difference between them.""Despite randomly selected transects are recommended , preexisting roads were used because according to Soto (2010) the existing system of roads is an adequate sample of the area.""Moreover, I recommend authors to re-analyze their data using the DISTANCE program (Buckland et al., 2004) to estimate population size over the period, as the analyses performed by this package seems much more robust that the one employed by authors.If they do so, authors could also include topographic variables in the models to see whether the resulting models change.The reason is that the authors do not explain if guanacos occur in both biomes (steppe and forest), because if that was true, detection of guanacos was completely different in both ecosystems.Therefore the band width of 500 or 1000m is not valid for forests." In the Section "Guanaco population sampling" the following paragraphs was incorporated to justify the methodology used: " Raedeke (1978) claims that the Leopold method is valid when the following conditions are satisfied: (1) the road systems must be an adequate sampling of the study area, (2) the network road must be randomly distributed, and (3) the animals included in the sampling must be randomly distributed in relation to the observer's route; and he considers that in the south of the Tierra del Fuego Island these assumptions are fulfilled.Soto 2010 compared population estimations by the Leopold and Distance methods and found that the value of the means estimate by Leopold methods fall within the confidence intervals estimated by Distance; additionally, as all sampling periods used the same methodology whatever bias might exist in the estimation of the mean abundance using the Leopold method, the relative changes among years (and thus the temporal trend) will be adequately represented; thus, we conclude that the Leopold's method seems adequate for our purposes ." In relation to the forest and the sampling methodology, as the area occupied by forests is low and it has some degree of intervention, the visibility of the guanaco is adequate, hence we considered that the forest is a minor component and that does not affect the efficiency of the sampling procedure.In the section "Study area" the next paragraph was incorporated:

"The forested area is about 8.8% of the total study area, with different degrees of forest clearance that offers adequate visibility for guanaco sampling." "Regarding the population size estimated along the 36 years (Supplementary table), important (huge) differences are found, for example between 2004 and 2005 or between 2006 and 2007, or between 2007 and 2008. My concern is if such "jumps" could be related
to the census surveyed.Please discuss this point."

2.
In the "Discussion" section we added the following discussion as required by the reviewer: "The results of the guanaco population sampling suggest a certain trend in the population size, with a sort of exponential growth in the first few years, becoming more variable as the population grows, with more marked fluctuations during the last 10-12 years; this may imply that the population is becoming stabilized, possibly approaching its carrying capacity.On the other hand, the sampling results of those last 10-12 years show abrupt "jumps" in some years (for example 2004-2005) that may be the consequence of the mobility of guanacos from the Cameron ranch to neighboring sites and vice versa; since the transect sampling does not identify individuals the effects of possible local displacements could not be considered."

"The authors used a stepwise regression when other approaches such as logistic regressions, Ricker or Beverton-Holt models could give more suitable results. Please explain or justify your decision."
Our goal was to carry out a preliminary analysis that would guide us in the study of the population regulation process in the guanaco.As there are studies in ungulate that have used simple multiple regression analysis and obtained good/satisfactory results, we considered that it was of interest to test this technique as a first step in such an analysis.In the manuscript the following paragraph was incorporated in the "Discussion" section to justify our decision:

"Contrary to what was expected based on the bibliography of ungulate's population dynamics, weather variables do not seem to influence the density-dependent population growth rate process of the guanaco population of the Cameron ranch. Our aim was to carry out a preliminary analysis that would help identify some of the regulation processes in guanaco population; so we used a simple multiple regression analysis as a first step in that direction; nevertheless, our conclusion is that in order to test the effects of climatic variables on population regulation of large ungulates as the guanaco, the use of a population dynamic model would be recommended, for they seem to account better for the interaction between density-dependent processes and weather variables than a simple regression between the latter and guanaco population growth rate." "The selection of the best model among the candidates should be done by Akaike's information"
This suggestion was considered and the respective Akaike's values were calculated.

Minor comments:
"Refer to climatic variables or climatic effects, instead of climatic covariables." The recommendation was applied.

"Explain more in detail Corani & Gatto's studies."
With the previous changes we realize that the citation of Corani and Gatto (2007) is not necessary any more.Mainly because the essence of that paper is the proposal of a methodology that is not strictly relevant to our work.The phrase with this citation was F1000Research 2. 3.

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methodology that is not strictly relevant to our work.The phrase with this citation was deleted.

"Please remove information related to metabolic studies between guanacos and sheep (1st paragraph of study area section)."
The suggestion was carried out.
"Please add Nothofagus spp among the brackets after deciduous forest (study area section) if it is the case." This information is already incorporated.

"Give more information about livestock ranching, density, and size and the relation of livestock rangers with guanacos along the studied period (study area section)."
This information was already incorporate in the section "Sheep population" "Are the guanacos found both in the steppe and the forest biomes?" Yes, the guanacos use both but they mostly use the open habitat (i.e.steppes and meadows).
"Please re-write the paragraph related to guanaco sampling through transect method in the consecutive periods (it is not clear enough)." The paragraph was improved.

"Please remove information related to binoculars and GPS brands (did the authors use the same gadgets across 36 years?)."
The recommendation was carried out.
"Explain the interest of using time lags (T) as covariables in the model." The next paragraph was incorporated in section "Population analysis": "The inclusion of time lags is convenient because it may detect possible cumulative climatic effects on ungulate population growth rates as it was observed in, e.g., deer and moose and in vicuñas ".

"Please add the Statistica version employed."
The tools was replaced by language (Version 0.97.449-©2009-2012 RStudio, Statistica R Inc.) to obtain the value of Akaike and satisfy the item 3.2 (see above). 1.

"Please move explanations of the analyses perform from results to material & methods section."
The recommendation was carried out.The authors hypothesized that population density and climatic variables affect the growth rate of the population of guanacos in the study area.However, as it is detailed under the "Study area" subsection, the domestic sheep share the area with the guanaco and substantial changes in stocking rate have been reported for the ranch during the study period.It is known that sheep and guanacos select similar diets across different parts of the range they share, and usually sheep presence and abundance explain a substantial amount of variation in the abundance of guanacos, included the study area comprising the Estancia Cameron as described by .In his work, Raedeke described that sheep are Raedeke (1979) managed "rotationally" around the property, taken seasonally to different areas in winter and summer, and this makes guanacos move seasonally to the forest habitat.Therefore, it would be expected that variations in sheep abundance, not only seasonally but in total numbers through time, could affect the estimates of guanaco abundance.In my opinion, this is a major issue in the design of this work.Also, as explained below, the survey design of this work could play a key role in the quality of the estimates obtained, which is reflected also in the interpretation of results.All of these do not mean that density dependent processes are not likely to occur, but to my understanding it is not possible to rule out other processes to be conclusive.

Guanaco population sampling
The surveys were conducted at a 2,000 km ranch where the habitat is a mosaic of steppe and forest biomes.The authors indicate that they surveyed guanacos using the "transect method with a variable width" from 1977 to 2000.Is this the distance sampling?If so, it is based on measuring the perpendicular distance from the transect to the object.Also, it is says that the surveying methodology was changed to "fixed width band" in 2001 and subsequent years.Some comments and questions on these issues regarding survey design are: Were both the steppe and forest habitats surveyed using the same methodology?Transect lines to observe individuals and make direct counts are commonly used in open habitats, but not in the forest.However if this was not the case, the authors need to account for the variation in the probability of detection as it is expected to vary significantly between such contrasting habitat types.
There was a change in the surveying method, which also brings the point of detection probability.While the line transect method assumes that the probability of detecting objects on the line (distance=0) is p=1, and as objects are far from the line the probability of detection follows a certain declining function, the main assumption of the strip transect method is that the probability of 2 F1000Research 2.

3.
certain declining function, the main assumption of the strip transect method is that the probability of detecting objects within the strip is 1 (i.e.no objects are left undetected).This variation in the probability of detection according to the methodology applied during each period must be discussed.Also, the ways that the density estimates were obtained are unclear and must be specified (i.e.distance sampling, other calculation methods).
Regarding the estimate of population size, several considerations can be made about the extrapolation of absolute densities to population numbers.First, the spatial pattern of the transects surveyed could be determinant of biased estimates, if the objects are not randomly distributed in relation to the survey line (i.e. if the transect follows a geographic feature in such a way the animals are either attracted or deterred).Perhaps the transects are located across certain areas -for example the steppe -but not the forest and thus the estimate could be biased towards the density calculated for the surveyed portion of the total area.This is especially important at the time of extrapolate densities to obtain population size numbers, as densities are strictly valid for the areas effectively surveyed while traveling along the transect lines.In any case, it would be useful to provide the distribution of surveyed lines across the area.The second point I find relevant to discuss regarding survey design is the proportion of the area effectively surveyed.How many km were comprised by the lines and strips surveyed?Again, the extrapolation of densities to population size at a larger scale must account for possible limitations related to the survey design and effort invested.

Results and discussion
Major fluctuations of the guanaco population occurred during the last 10-12 years analyzed, as can be found in the additional data file provided, and also pointed out by the authors.But this variation could well be due to the changes in methodology at the time of the population surveys.As said above, it is necessary to provide detailed information on the type of survey conducted, the differences with the previous method and the way the density estimates were obtained.It would be informative if the authors provide the errors associated with the population estimates.
As proposed above, sheep densities could be affecting guanaco population trends, but the design of the work does not allow accounting for this factor.In my opinion, sheep densities must be included as an explanatory variable as there is evidence they affect guanaco numbers.Also, as the authors concluded that in this study the guanaco populations was near carrying capacity, and this must be common to both guanacos and sheep, thus sheep must be considered in the analysis as its density was markedly variable during the study period.Another factor that should be considered at the time of the discussion is the possibility of guanacos moving from the surveyed surroundings or even from Cameron to neighboring sites, as they may respond to changes in the spatial availability of resources by occupying different sites.In summary, the marked fluctuations in population size require the examination and discussion of other possible factors before concluding that density dependent processes would drive population trends.
I have read this submission.I believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.
No competing interests were disclosed.

Competing Interests:
"The authors hypothesized that population density and climatic variables affect the growth rate of the population of guanacos in the study area.However, as it is detailed under the "Study area" subsection, the domestic sheep share the area with the guanaco and substantial changes in stocking rate have been reported for the ranch during the study period.It is known that sheep and guanacos select similar diets across different parts of the range they share, and usually sheep presence and abundance explain a substantial amount of variation in the abundance of guanacos, included the study area comprising the Estancia Cameron as described by .In his work, Raedeke described that sheep are Raedeke (1979)  managed "rotationally" around the property, taken seasonally to different areas in winter and summer, and this makes guanacos move seasonally to the forest habitat.Therefore, it would be expected that variations in sheep abundance, not only seasonally but in total numbers through time, could affect the estimates of guanaco abundance.In my opinion, this is a major issue in the design of this work.Also, as explained below, the survey design of this work could play a key role in the quality of the estimates obtained, which is reflected also in the interpretation of results.All of these do not mean that density dependent processes are not likely to occur, but to my understanding it is not possible to rule out other processes to be conclusive." In relation to the suggestion to incorporate livestock in the analysis, we re-analyzed our regression incorporating the variable livestock as sheep population; we re-processed the regressions incorporating the sheep population as a new independent variable of the guanaco population growth rate (l); so our new analysis increased from 5 to 6 independent variables: sheep population, guanaco population size, winter temperature, winter temperature with a lag of 1 year, annual precipitation, annual precipitation with a lag of 3 years.Our main results didn't change and it was confirmed that only the guanaco population size seems to have an effect on the population growth rate (l).These changes can be found in the "Methods" and in the "Results" paragraphs.
"The surveys were conducted at a 2,000 km ranch where the habitat is a mosaic of steppe and forest biomes.The authors indicate that they surveyed guanacos using the "transect method with a variable width" from 1977 to 2000.Is this the distance sampling?If so, it is based on measuring the perpendicular distance from the transect to the object." No, the sampling methodology did not use the program Distance.The citations of Buckland et al. (1993 and 2001) were removed to avoid possible misinterpretations with the sampling methodology used.The method used to estimate the population size was the King method modified by Leopold (1933) as described in Raedeke (1978).In the manuscript it was explained and justified this method with the following paragraph: " Raedeke (1978) claims that the Leopold method is valid when the following conditions are satisfied: (1) the road systems must be an adequate sampling of the study area, (2) the network road must be randomly distributed, and (3) the animals included in the sampling must be randomly distributed in relation to the observer's route; and he considers that in the south of the Tierra del Fuego Island these assumptions are fulfilled.Soto 2010 compared population estimations by the Leopold and Distance methods and found that the value of the means estimate by Leopold methods fall within the confidence intervals estimated by Distance; additionally, as all sampling periods used the same methodology whatever bias might exist in the estimation of the mean abundance using the Leopold method, the relative changes among years (and thus the temporal trend) will be adequately represented; thus, we conclude that the Leopold's method seems adequate for our purposes .The area effectively surveyed in each sampling period was around adequate for our purposes .The area effectively surveyed in each sampling period was around 420 km² (about 20%, of the area under study)." "Also, it is says that the surveying methodology was changed to "fixed width band" in 2001 and subsequent years.Some comments and questions on these issues regarding survey design are: Were both the steppe and forest habitats surveyed using the same methodology?Transect lines to observe individuals and make direct counts are commonly used in open habitats, but not in the forest.However if this was not the case, the authors need to account for the variation in the probability of detection as it is expected to vary significantly between such contrasting habitat types." We corrected in the manuscript the years where the change in band width occurred: variable band width from 1977 to 1995, and with a fixed width band (with a maximum of 500 m to each side of the transect) from 1996 to 2012.
The area occupied by forest is low and it has some degree of intervention, the visibility of the guanaco is adequate, hence we considered that the forest is a minor component and it does not affect the efficiency of sampling.In the section "Study area" the following paragraph was incorporated: "The forested area is about 8.8% of the total study area, with different degrees of forest clearance that offers adequate visibility for guanaco sampling.""There was a change in the surveying method, which also brings the point of detection probability.While the line transect method assumes that the probability of detecting objects on the line (distance=0) is p=1, and as objects are far from the line the probability of detection follows a certain declining function, the main assumption of the strip transect method is that the probability of detecting objects within the strip is 1 (i.e.no objects are left undetected).This variation in the probability of detection according to the methodology applied during each period must be discussed.Also, the ways that the density estimates were obtained are unclear and must be specified (i.e.distance sampling, other calculation methods)." We improved this section and the next paragraph was incorporate to explain this change.The population size was estimated by King method modified by Leopold (1933) as described by Raedeke (1978), which was also clarified in the manuscript."The sampling methodology was changed by an expert recommendation made in 1995 ; as in year 2000 the fixed and the undefined band width methods were applied simultaneously, we tested both results and found no significant statistical difference between them.""Regarding the estimate of population size, several considerations can be made about the extrapolation of absolute densities to population numbers.First, the spatial pattern of the transects surveyed could be determinant of biased estimates, if the objects are not randomly distributed in relation to the survey line (i.e. if the transect follows a geographic feature in such a way the animals are either attracted or deterred).Perhaps the transects are located across certain areas -for example the steppe -but not the forest and thus the estimate could be biased towards the density calculated for the surveyed portion of the total area.This is especially important at the time of extrapolate densities to obtain population size numbers, as densities are strictly valid for the areas effectively surveyed while traveling along the transect lines.In any case, it would be useful to provide the distribution of surveyed lines across the area.The second point I find relevant to discuss regarding survey 18   23  F1000Research surveyed lines across the area.The second point I find relevant to discuss regarding survey design is the proportion of the area effectively surveyed.How many km were comprised by the lines and strips surveyed?Again, the extrapolation of densities to population size at a larger scale must account for possible limitations related to the survey design and effort invested." Although the transects are not randomly distributed, the preexisting roads can be considered as an adequate sample of the area.This comment was incorporate in the manuscript.
"Despite randomly selected transects are recommended , preexisting roads were used because according to Soto (2010) the existing system of roads is an adequate sample of the area." The second point was considered and the area effectively surveyed was estimated.In the "Guanaco population sampling" section the following paragraph was incorporated: "The area effectively surveyed in each sampling period was around 420 km² (about 20%, of the area under study).""Major fluctuations of the guanaco population occurred during the last 10-12 years analyzed, as can be found in the additional data file provided, and also pointed out by the authors.But this variation could well be due to the changes in methodology at the time of the population surveys.As said above, it is necessary to provide detailed information on the type of survey conducted, the differences with the previous method and the way the density estimates were obtained.It would be informative if the authors provide the errors associated with the population estimates." The errors associated with the population estimates are given in Table S1 where the lower and upper limits of the 95% confidence intervals (CI) are shown."As proposed above, sheep densities could be affecting guanaco population trends, but the design of the work does not allow accounting for this factor.In my opinion, sheep densities must be included as an explanatory variable as there is evidence they affect guanaco numbers.Also, as the authors concluded that in this study the guanaco populations was near carrying capacity, and this must be common to both guanacos and sheep, thus sheep must be considered in the analysis as its density was markedly variable during the study period.Another factor that should be considered at the time of the discussion is the possibility of guanacos moving from the surveyed surroundings or even from Cameron to neighboring sites, as they may respond to changes in the spatial availability of resources by occupying different sites.In summary, the marked fluctuations in population size require the examination and discussion of other possible factors before concluding that density dependent processes would drive population trends."This factor (sheep population) has been incorporated, and the corresponding analysis was carried out; see in the "Materials and methods" section "Sheep Population" and the section "Results".In the "Discussion" section the following paragraph was included where we recognized the possibility of guanaco moving as possible source of error in the sampling: "The results of the guanaco population sampling suggest a certain trend in the population size, with a sort of exponential growth in the first few years, becoming more variable as the population grows, with more marked fluctuations during the last 10-12 years; this may imply that the population is becoming stabilized, possibly approaching its carrying capacity.On the other hand, the sampling results of those last 10-12 years show abrupt "jumps" in some years (for example 2004-2005) that ]; data of winter temperature (Av winter temp); annual precipitation (P) [ranges of changed values are only for years: 2003-2011].

Figure 1 .
Figure 1.Effect of the guanaco population size on guanaco's finite population growth rate (λ).On the x-axis the guanaco population from the Cameron ranch (Tierra del Fuego, Chile) was transformed to a natural logarithmic scale.The values of λ represent the finite population growth rate (on a per year time unit).
for Land, Water, and Society, Charles Sturt University, Albury, Australia I have cross checked the comments from the two original referees with the responses from the authors and consider that the authors have adequately addressed all comments.The study has various limitations, such as a limited set of predictor variables, lack of the use of a sampling technique (e.g.Distance sampling) that accounts for differences in detectability, and application of a simple regression analysis.The authors have adequately addressed each of these major issues in their response to F1000Research 1.

Introduction
1n order to understand population dynamics and optimize the management of wildlife populations it is important to identify how populations are affected by environmental factors and their own density, particularly in species living in extreme environments.Mechanisms that regulate guanaco populations (Lama guanicoe) are poorly known; this species was heavily exploited in the Patagonian steppe, and its numbers and distribution have diminished significantly during the last century because of grazing conflicts with a sheep-based society, and overhunting (the guanaco's historical distribution has been reduced by 75% in Chile and Peru, and by 60% in Argentina)1.

Table 1 . Results of multiple regression analysis between the population
growth rate (λ) as dependent variable, and (in log scale) total guanaco population (LnNtot), sheep population (LnSheep), annual mean precipitation (Annual Precip), mean precipitation with lags of 7 years (Precip (T = 7)), winter mean temperature (Winter temp.), and winter mean temperature with lagged 1 year (Winter temp (T = 1)) as independent variables.The results show the regression coefficients (Estimate), their standard errors (Std.Error) and t-test values (t value), with their probability value (Pr(>|t|)).

Table 2 . Results of the simple linear regression analysis between the population growth rate (λ) as dependent variable, and (in log scale) total guanaco population (
LnNtot).The interpretation of the statistical parameters are as in Table1.Estimate Std.Error t value Pr(>|t|)