<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="data-paper" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.6447.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Data Note</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                    <subj-group>
                        <subject>Community Ecology &amp; Biodiversity</subject>
                    </subj-group>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Genomic resources of two landsnail, 
                    <italic>Aegista diversifamilia</italic> and 
                    <italic>Dolicheulota formosensis</italic>, generated by Illumina paired-end sequencing</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Huang</surname>
                        <given-names>Chih-Wei</given-names>
                    </name>
                    <uri content-type="orcid">https://orcid.org/0000-0002-2921-4294</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Wu</surname>
                        <given-names>Wen-Lung</given-names>
                    </name>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Life Science, National Taiwan Normal University, Section 4, Taipei, 11677, Taiwan</aff>
                <aff id="a2">
                    <label>2</label>Biodiversity Research Center, Academia Sinica, Nankang District, Taipei, 11529, Taiwan</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:limnoperna@gmail.com">limnoperna@gmail.com</email>
                </corresp>
                <fn fn-type="con">
                    <p>All authors were involved in experimental design, manuscript preparation and approval of the final version to be published.</p>
                </fn>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>6</day>
                <month>5</month>
                <year>2015</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2015</year>
            </pub-date>
            <volume>4</volume>
            <elocation-id>106</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>1</day>
                    <month>5</month>
                    <year>2015</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2015 Huang CW and Wu WL</copyright-statement>
                <copyright-year>2015</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/4-106/pdf"/>
            <abstract>
                <p>Despite the land snail harboring high biodiversity and dominance on land, just a few genetic markers are available for phylogeographic and phylogenetic research. We sequenced the partial genome of two land snail species that belong to the speciose family Bradybaenidae in East Asia: 
                    <italic toggle="yes">Aegista diversifamilia</italic> and 
                    <italic toggle="yes">Dolicheulota formosensis</italic>. The raw sequences were generated by Illumina paired-end sequencing and can be accessed in the 
                    <ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/sra">Sequence Read Archive</ext-link> under the accession numbers SRR1918809 (
                    <italic toggle="yes">A. diversifamilia</italic>) and SRR1920140 (
                    <italic toggle="yes">D. formosensis</italic>).</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Helicoidea</kwd>
                <kwd>Next-generation sequencing</kwd>
                <kwd>Pulmonata</kwd>
                <kwd>Stylommatophora</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>This research was partially supported by the grant to Wen-Lung Wu from the Center for Information Technology Innovation and Biodiversity Research Center, Academia Sinica.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>Stylommatophora is the dominant gastropod clade on land. The family Bradybaenidae is mainly distributed in Asia and diversified in East Asia. However, only a handful of genetic markers are available for phylogenetic research. We selected two land snail species as representatives of Bradybaenidae: 
                <italic toggle="yes">Aegista diversifamilia</italic> 
                <xref ref-type="bibr" rid="ref-2">Huang 
                    <italic toggle="yes">et al.</italic>, 2014</xref> and 
                <italic toggle="yes">Dolicheulota formosensis</italic> (
                <xref ref-type="bibr" rid="ref-1">H. Adams, 1866</xref>). We subjected these species to Illumina paired-end sequencing in the hope that this will expand and provide valuable genetic resources for phylogeographic and phylogenetic research of gastropods.</p>
        </sec>
        <sec sec-type="materials | methods">
            <title>Materials and methods</title>
            <p>Genomic sequences were generated from one fresh specimen preserved at -20&#x00b0;C (
                <italic toggle="yes">A. diversifamilia</italic>) and one two-year-old ethanol-preserved specimen (
                <italic toggle="yes">D. formosensis</italic>), respectively. The living individual of 
                <italic toggle="yes">A. diversifamilia</italic> was collected from leaf litter under lowland broadleaf forest in Xiulin Township, Hualien County, Taiwan in October 2013. 
                <italic toggle="yes">D. formosensis</italic> was collected from the tree trunk of a lowland broadleaf forest in Mudan Township, Pingtung County, Taiwan in June 2012. Snails were brought back to laboratory and rinsed with ddH
                <sub>2</sub>O to eliminate soil and other particles attached to the shell. The living individual of 
                <italic toggle="yes">A. diversifamilia</italic> was preserved in a -20&#x00b0;C refrigerator. The individual of 
                <italic toggle="yes">D. formosensis</italic> was relaxed under water for 12 hours and fixed by blanching with boiling water for several seconds. The specimen of 
                <italic toggle="yes">D. formosensis</italic> was transferred to 95% ethanol solution and the ethanol was changed every 24 hours for 48 hours. The specimen of 
                <italic toggle="yes">D. formosensis</italic> was finally preserved in 95% ethanol.</p>
            <p>For 
                <italic toggle="yes">A. diversifamilia</italic>, the shell was removed after the snail was crushed. Soft tissue was rinsed with TEK buffer (50 ml 1M Tris-HCl pH 7.5, 50 ml 0.2M EDTA pH 7.5, 15g KCl, pH 7.5) and then used for genomic DNA extraction with AxyPrep&#x2122; Multisource Genomic DNA Miniprep Kit (Axygen Bioscience) following the manufacturer&#x2019;s protocol. For 
                <italic toggle="yes">D. formosensis</italic>, partial foot tissue was rinsed with ddH
                <sub>2</sub>O several times to remove ethanol and then used for DNA extraction through a modified phenol-chloroform method (
                <xref ref-type="bibr" rid="ref-3">Jiang 
                    <italic toggle="yes">et al.</italic>, 1997</xref>).</p>
            <p>The quantity of extracted DNA solution was evaluated by Qubit
                <sup>&#x00ae;</sup> dsDNA HS Assay Kit (Life Technologies). The DNA concentration was 131 ng/&#x03bc;L (total mass 20.96 &#x03bc;g) and 52.9 ng/&#x03bc;L (5.92 &#x03bc;g) for 
                <italic toggle="yes">A. diversifamilia</italic> and 
                <italic toggle="yes">D. formosensis</italic>, respectively. The DNA solution was send to BGI (Shenzhen, China) for paired-end library construction with insert size of approximately 500 base pairs using a Paired-End DNA Sample Prep Kit (Illumina). Sequencing was performed using Illumina HiSeq2000 in BGI. Raw sequences data can be accessed in Sequence Read Archive under accession number SRR1918809 for 
                <italic toggle="yes">A. diversifamilia</italic> and SRR1920140 for 
                <italic toggle="yes">D. formosensis</italic>.</p>
        </sec>
        <sec>
            <title>Ethics policies</title>
            <p>Ethical approval for the animals used was not required. Both species used in this study were common and not under list of protected species in Taiwan.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments</title>
            <p>We would like to thank Genomics BioSci &amp; Tech (Taiwan) for the assistance of experimental design. Thanks for BGI (Shenzhen, China) for the service of sequencing.</p>
        </ack>
        <ref-list>
            <ref id="ref-1">
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">
						
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                            <surname>Adams</surname>
                            <given-names>H</given-names>
                        </name>
					</person-group>:
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                    <article-title>Taxonomic revision of 
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    </back>
    <sub-article article-type="reviewer-report" id="report8910">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.6918.r8910</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Opazo</surname>
                        <given-names>Juan</given-names>
                    </name>
                    <xref ref-type="aff" rid="r8910a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r8910a1">
                    <label>1</label>Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>22</day>
                <month>6</month>
                <year>2015</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2015 Opazo J</copyright-statement>
                <copyright-year>2015</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport8910" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.6447.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This data note is reporting massive amount of genetic data for two landsnail species, with the aim that this resource will serve as a platform to develop phylogenetic and phylogeographic makers. The goal of this note is well justified given that for one of the genera, 
                <italic>Dolicheulota</italic>, there are no NCBI entries, whereas for the other the diversity of them is low. Samples were sequenced using standard protocols in a facility that has experience in sequencing protocols. I am convinced that this data will be useful to the scientific community, especially to those interested in the evolutionary history of gastropods.</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
</article>
