<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="review-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.7346.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Review</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                    <subj-group>
                        <subject>Plant Biochemistry &amp; Physiology</subject>
                    </subj-group>
                    <subj-group>
                        <subject>Plant-Environment Interactions</subject>
                    </subj-group>
                    <subj-group>
                        <subject>Plant Genetics &amp; Gene Expression</subject>
                    </subj-group>
                    <subj-group>
                        <subject>Plant Growth &amp; Development</subject>
                    </subj-group>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>The role of COP1 in repression of photoperiodic flowering</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Xu</surname>
                        <given-names>Dongqing</given-names>
                    </name>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Zhu</surname>
                        <given-names>Danmeng</given-names>
                    </name>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Deng</surname>
                        <given-names>Xing Wang</given-names>
                    </name>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, School of Advanced Agriculture Sciences and School of Life Sciences, Peking University, Beijing, China</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:deng@pku.edu.cn">deng@pku.edu.cn</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>The authors declare that they have no competing interests.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>16</day>
                <month>2</month>
                <year>2016</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2016</year>
            </pub-date>
            <volume>5</volume>
            <elocation-id>F1000 Faculty Rev-178</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>11</day>
                    <month>2</month>
                    <year>2016</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2016 Xu D et al.</copyright-statement>
                <copyright-year>2016</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/5-178/pdf"/>
            <abstract>
                <p>Plants use the circadian clock as a timekeeping mechanism to regulate photoperiodic flowering in response to the seasonal changes. CONSTITUTIVELY PHOTOMORPHOGENIC 1 (COP1), initially identified as a central repressor of seedling photomorphogenesis, was recently shown to be involved in the regulation of light input to the circadian clock, modulating the circadian rhythm and flowering. COP1 encodes a RING-finger E3 ubiquitin ligase and works in concert with SUPPRESSOR of 
                    <italic toggle="yes">phyA-105</italic> (SPA) proteins to repress photoperiodic flowering by regulating proteasome-mediated degradation of CONSTANS (CO), a central regulator of photoperiodic flowering. In addition, COP1 and EARLY FLOWERING 3 (ELF3) indirectly modulate 
                    <italic toggle="yes">CO</italic> expression via the degradation of GIGANTEA (GI). Here, we summarize the current understanding of the molecular mechanisms underlying COP1&#x2019;s role in controlling of photoperiodic flowering.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>COP1</kwd>
                <kwd>photoperiodic flowering</kwd>
                <kwd>CONSTITUTIVE PHOTOMORPHOGENIC 1</kwd>
                <kwd>flowering time</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>This work was supported by National Natural Science Foundation of China (31330048) and the National Institutes of Health (GM047850).</funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
        <notes>
            <sec sec-type="editor-note">
                <title>Editorial Note on the Review Process</title>
                <p>
                    <ext-link ext-link-type="uri" xlink:href="http://f1000research.com/browse/faculty-reviews">F1000 Faculty Reviews</ext-link> are commissioned from members of the prestigious
                    <ext-link ext-link-type="uri" xlink:href="http://f1000.com/prime/thefaculty">F1000 Faculty</ext-link> and are edited as a service to readers. In order to make these reviews as comprehensive and accessible as possible, the referees provide input before publication and only the final, revised version is published. The referees who approved the final version are listed with their names and affiliations but without their reports on earlier versions (any comments will already have been addressed in the published version).</p>
                <p>The referees who approved this article are: </p>
                <list list-content="reviewer-list" list-type="simple">
                    <list-item>
                        <p>
                            <named-content content-type="reviewer-name">Nam-Chon Paek</named-content>, Department of Plant Science, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, South Korea
                            <fn fn-type="conflict">
                                <p>No competing interests were disclosed.</p>
                            </fn>
                        </p>
                    </list-item>
                    <list-item>
                        <p>
                            <named-content content-type="reviewer-name">Haiyang Wang</named-content>, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
                            <fn fn-type="conflict">
                                <p>No competing interests were disclosed.</p>
                            </fn>
                        </p>
                    </list-item>
                </list>
            </sec>
        </notes>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>In plants, the phase transition from vegetative to reproductive development is controlled by multiple environmental cues, including photoperiod, light quality, and temperature
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-1">1</xref>
                </sup>. According to their flowering response to the photoperiod change, plants could be classified as long-day (LD) plants, short-day (SD) plants, and day-neutral plants, respectively
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. At present, most advances regarding the flowering-time control were obtained in the model facultative LD plant 
                <italic toggle="yes">Arabidopsis</italic> and the model SD plant rice. A central regulator of LD-induced flowering is the B-box zinc finger transcription factor CONSTANS (CO), which positively regulates flowering time by upregulating the expression of &#x201c;florigen&#x201d; 
                <italic toggle="yes">FLOWERING LOCUS T</italic> (
                <italic toggle="yes">FT</italic>) in 
                <italic toggle="yes">Arabidopsis</italic>
                
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. The control of CO abundance by circadian clock and light plays a crucial role in regulating flowering.</p>
            <p>CONSTITUTIVELY PHOTOMORPHOGENIC 1 (COP1) was initially identified as a key repressor of photomorphogenesis over 20 years ago in 
                <italic toggle="yes">Arabidopsis</italic>
                
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-4">4</xref>,
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. The subsequent characterization of COP1 revealed its function in multiple light-mediated developmental processes in 
                <italic toggle="yes">Arabidopsis</italic> and other higher plants, including circadian rhythm and flowering
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-6">6</xref>,
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. The ortholog of 
                <italic toggle="yes">Arabidopsis</italic> COP1 was also found to play vital roles in regulating a variety of developmental processes in animals. COP1 encodes a RING-finger E3 ubiquitin ligase. In 
                <italic toggle="yes">Arabidopsis</italic>, COP1 functions together with SUPPRESSOR of 
                <italic toggle="yes">phyA-105</italic> (SPA) proteins to target the photomorphogenesis-promoting factors for degradation via the 26S proteasome system, such as ELONGATED HYPOCOTYL 5 (HY5), LONG AFTER FAR-RED LIGHT 1 (LAF1), and LONG HYPOCOTYL IN FAR-RED 1 (HFR1)
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-8">8</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-11">11</xref>
                </sup>.</p>
        </sec>
        <sec>
            <title>The relationship of photoreceptors and COP1 in flowering</title>
            <p>In 
                <italic toggle="yes">Arabidopsis</italic>, far-red and red light is perceived by phytochromes (phyA-phyE)
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-12">12</xref>,
                    <xref ref-type="bibr" rid="ref-13">13</xref>
                </sup>; blue light is sensed by cryptochromes (CRY1 and CRY2) and several new photoperiodic and/or circadian photoreceptors: ZEITLUPE (ZTL), FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (FKF1), and LOV, KELCH PROTEIN 2 (LKP2)
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-14">14</xref>
                </sup>. It was reported that phyA and CRYs are two classes of principal photoperiodic photoreceptors that promote flowering. Mutations in these genes reduce the accumulation of CO protein and delay flowering
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-15">15</xref>,
                    <xref ref-type="bibr" rid="ref-16">16</xref>
                </sup>. During photomorphogenesis, CRYs suppress the activity of the multifunctional E3 ubiquitin ligase COP1 by dissociating the formation of COP1-SPA complex(es), thereby repressing its E3 ubiquitin ligase activity to regulate gene expression in response to blue light
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-17">17</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-19">19</xref>
                </sup>. In flowering transition, blue light-dependent CRY2-SPA1 interaction stimulates CRY2-COP1 association to suppress the COP1-dependent proteolysis of CO
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-19">19</xref>
                </sup>. However, how phyA mediates light regulation of protein degradation to modulate developmental timing in flowering is unclear at present. In contrast to 
                <italic toggle="yes">cry2</italic>, the early-flowering phenotype of 
                <italic toggle="yes">phyB</italic> in SD is possibly resulting from a COP1-independent mechanism
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-15">15</xref>,
                    <xref ref-type="bibr" rid="ref-16">16</xref>,
                    <xref ref-type="bibr" rid="ref-20">20</xref>
                </sup>. Paradoxically, plants overexpressing phyB also show early flowering, in which the Pfr form of phyB inhibits COP1-SPA activity to stabilize CO and subsequently induce 
                <italic toggle="yes">FT</italic> expression by phyB-SPA1 direct interaction
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-21">21</xref>
                </sup>.</p>
        </sec>
        <sec>
            <title>COP1 direct targets in modulation of flowering</title>
            <p>CO acts as a central regulator of photoperiodic flowering, and its abundance directly correlates with the timing of flowering. CO is precisely regulated at both transcriptional and post-translational levels, and this is crucial for 
                <italic toggle="yes">Arabidopsis</italic> to discriminate the photoperiod and response to light.</p>
            <p>The expression of 
                <italic toggle="yes">CO</italic> is regulated by circadian clock-associated components, including GIGANTEA (GI), the F-box protein FKF1, and CYCLING DOF FACTORS (CDFs), which regulate daily 
                <italic toggle="yes">CO</italic> expression profiles
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-22">22</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-24">24</xref>
                </sup>. EARLY FLOWERING 3 (ELF3) acts as a substrate adaptor to allow COP1-GI interaction, which leads to the degradation of GI by COP1
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-25">25</xref>
                </sup>. FKF1 forms a complex with GI in a light-dependent manner, which contributes to control the 
                <italic toggle="yes">CO</italic> transcript level by mediating the degradation of 
                <italic toggle="yes">CO</italic> transcriptional repressors, CDFs
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-22">22</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-24">24</xref>
                </sup>. Thus, degradation of GI by COP1 may result in the disassociation of FKF1-GI complex and then negatively regulate 
                <italic toggle="yes">CO</italic> expression.</p>
            <p>Post-translational regulation of CO is another aspect for controlling flowering in response to day length. 
                <italic toggle="yes">cop1</italic> mutants display early-flowering phenotype under SD, which is largely related to the change of CO abundance. During the day, CO protein is stabilized, whereas at night CO protein is rapidly degraded through the 26S proteasome pathway mediated by COP1. COP1 directly interacts with the C-terminal of CO in phloem companion cells, where FT protein moves to induce flowering at the shoot apex
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-26">26</xref>,
                    <xref ref-type="bibr" rid="ref-27">27</xref>
                </sup>. In addition, the early-flowering phenotype of 
                <italic toggle="yes">spa1</italic> is enhanced by the lesion in 
                <italic toggle="yes">SPA3</italic> and 
                <italic toggle="yes">SPA4</italic>. SPA proteins negatively modulate CO abundance so that 
                <italic toggle="yes">spa1 spa3 spa4</italic> triple mutants exhibit strongly increased CO protein levels
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-28">28</xref>
                </sup>. A recent report further demonstrated that the COP1-SPA complex(es) directly interact with the phosphorylated form of CO protein to trigger its protein turnover
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-29">29</xref>
                </sup>.</p>
            <p>In the early morning, TARGET OF EAT (TOE) proteins associate with the transcriptional activation domain of CO to inhibit its activity
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-30">30</xref>
                </sup>. FKE1 stabilizes the CO abundance through a direct interaction in the late afternoon of LD
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-31">31</xref>
                </sup>. At night, CO is degraded through the ubiquitin-mediated 26S proteasome system. Consistently, CO protein levels and its direct target 
                <italic toggle="yes">FT</italic> peak in the afternoon under LD conditions
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-32">32</xref>
                </sup>. CO activates 
                <italic toggle="yes">FT</italic> expression mainly through two modes of action: (1) CO directly binds to the CO-responsive element (CORE) in the promoter of 
                <italic toggle="yes">FT</italic> to activate its expression
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-33">33</xref>
                </sup>. (2) CO physically interacts with two other 
                <italic toggle="yes">FT</italic> activators NUCLEAR FACTOR-Y (NF-Y) and Myb transcription factor ASYMMETRIC LEAVES 1 (AS1), which directly bind to 
                <italic toggle="yes">FT</italic> promoter, thus promoting their activation on 
                <italic toggle="yes">FT</italic>
                
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-34">34</xref>,
                    <xref ref-type="bibr" rid="ref-35">35</xref>
                </sup>. COP1 triggers the protein turnover of CO, in turn disrupting the formation of CO-NF-Y and CO-AS1 complexes and eventually repressing the 
                <italic toggle="yes">FT</italic> expression.</p>
            <p>Besides light, temperature is another important environmental indicator to determine the appropriate time to flower. Recent work showed that COP1 could act as an integrator of light and cold temperature. 
                <italic toggle="yes">cop1</italic> mutants exhibit reduced sensitivity to changes in ambient temperatures in an 
                <italic toggle="yes">FT</italic>-dependent manner in 
                <italic toggle="yes">Arabidopsis</italic>. At low ambient temperatures, COP1 is stabilized and subsequently promotes the degradation of GI, which directly activates 
                <italic toggle="yes">FT</italic> expression to promote flowering
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-36">36</xref>
                </sup>.</p>
        </sec>
        <sec>
            <title>COP1-related factors in control of flowering</title>
            <p>Similar to COP1, another repressor of photomorphogenesis, DE-ETIOLATE 1 (DET1), functions as a negative regulator of flowering, as 
                <italic toggle="yes">det1</italic> mutants flower early in both LD and SD (extremely early in SD)
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-37">37</xref>
                </sup>. DET1 was shown to be part of the COP10, DE-ETIOLATE 1, DAMAGED DNA-BINDING PROTEIN 1 (CDD) complex, working as CUL4-based E3 ligase
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-38">38</xref>
                </sup>. Co-suppression mutants of 
                <italic toggle="yes">CUL4</italic> also showed early-flowering phenotype under SD conditions. CUL4-DDB1 also associates with COP1-SPA complexes
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-39">39</xref>
                </sup>. Together, these studies indicate that a series of E3 ligase complexes may work in concert to repress flowering.</p>
            <p>Recent studies revealed that, besides COP1, another RING-finger containing E3 ubiquitin ligase, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 (HOS1), is also involved in controlling the CO protein levels. In the morning of LD, phyB-mediated red light signaling activates HOS1 to degrade CO
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-40">40</xref>
                </sup>. However, on the night of SD, CO protein is ubiquitinated and degraded by COP1-SPA complexes. Consistently, 
                <italic toggle="yes">hos1 cop1</italic> double mutants display complete photoperiodic insensitivity, suggesting that HOS1 and COP1 function synergistically in the control of flowering time
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-41">41</xref>,
                    <xref ref-type="bibr" rid="ref-42">42</xref>
                </sup>. Moreover, a regulator of the TOPOISOMERASE VI complex, MIDGET (MID), physically interacts with COP1 and is required for COP1 function as a repressor of flowering under SD conditions
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-43">43</xref>
                </sup>.</p>
            <p>In SD plant rice, 
                <italic toggle="yes">PETER PAN SYNDROME</italic> (
                <italic toggle="yes">PPS</italic>) encodes an ortholog of 
                <italic toggle="yes">Arabidopsis COP1.</italic> Although PPS is similar to COP1 in repressing photomorphogenesis
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-44">44</xref>
                </sup>, it controls photoperiodic flowering by HEADING DATE 1 (Hd1) (ortholog of 
                <italic toggle="yes">Arabidopsis</italic> CO) via a currently unknown mechanism
                <sup>
                    
                    <xref ref-type="bibr" rid="ref-45">45</xref>
                </sup>.</p>
        </sec>
        <sec>
            <title>Future perspectives</title>
            <p>Extensive studies have revealed a complicated but delicate network in regulating photoperiodic flowering in plants. After the role of COP1 in repressing light responses at seedling stage by the regulation of proteolysis was established, later advances have greatly expanded its implication in the control of photoperiodic flowering and circadian rhythm. The studies mentioned in this review have also raised a number of challenging questions to be addressed in the future. As a long-term goal, the roles of COP1 in light quality control of flowering would be of great interest to determine. Specifically, how does COP1 work in concert or function antagonistically with other key factors to control CO abundance/activity in a special photoperiod or in response to multiple environmental cues? How does COP1 determine the substrates to be degraded by the COP1&#x2013;SPA complex alone or together by other COP/DET/FUS protein-containing complex(es)? Moreover, the identification and characterization of novel direct targets of COP1 in the control of photoperiodic flowering will assist us in understanding the molecular mechanism underlying CO-independent pathways. In addition, further studies on the differential mechanisms of COP1 function in 
                <italic toggle="yes">Arabidopsis</italic> and crop plants will help us to explore their functional novelty and diversity during the evolution of monocots and dicots.</p>
        </sec>
        <sec>
            <title>Abbreviations</title>
            <p>AS1, ASYMMETRIC LEAVES 1; CDF, CYCLING DOF FACTOR; CO, CONSTANS; COP1, CONSTITUTIVE PHOTOMORPHOGENIC 1; CRY, cryptochromes; CUL4, CULLIN4; DET1, DE-ETIOLATE 1; FKF1, FLAVIN BINDING, KELCH REPEAT, F-BOX 1; FT, FLOWERING LOCUS T; GI, GIGANTEA; HOS1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1; LD, long-day; MID, MIDGET; PPS, PETER PAN SYNDROME; NF-Y, NUCLEAR FACTOR-Y; PHY
                <italic toggle="yes">,</italic> phytochromes; SD, short-day; SPA, SUPPRESSOR of 
                <italic toggle="yes">phyA-105</italic>.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments</title>
            <p>We apologize to the colleagues whose work could not be cited because of space limitations.</p>
        </ack>
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