<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="other" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.11539.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Note</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                    <subj-group>
                        <subject>Immune &amp; Inflammatory Rheumatic Diseases (incl. Arthritis)</subject>
                    </subj-group>
                    <subj-group>
                        <subject>Medical Genetics</subject>
                    </subj-group>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Rheumatoid arthritis in an adult patient with mosaic distal 18q-, 18p- and dicentric ring chromosome 18</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Chau</surname>
                        <given-names>Alanna</given-names>
                    </name>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Ramesh</surname>
                        <given-names>KH</given-names>
                    </name>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Jagannath</surname>
                        <given-names>Anand D</given-names>
                    </name>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Arora</surname>
                        <given-names>Shitij</given-names>
                    </name>
                    <uri content-type="orcid">https://orcid.org/0000-0002-8927-6171</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Albert Einstein College of Medicine, Bronx, New York City, NY, USA</aff>
                <aff id="a2">
                    <label>2</label>Department of Pathology, Montefiore Medical Center, Bronx, New York City, NY, USA</aff>
                <aff id="a3">
                    <label>3</label>Department of Medicine, Montefiore Medical Center, Bronx, New York City, NY, USA</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:drshitij@yahoo.com">drshitij@yahoo.com</email>
                </corresp>
                <fn fn-type="con">
                    <p>AC wrote the manuscript. KR contributed with the cytogenetics analysis. AJ and SA were involved in the care of this patient. AC and SA conceptualized the manuscript.</p>
                </fn>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>2</day>
                <month>11</month>
                <year>2017</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2017</year>
            </pub-date>
            <volume>6</volume>
            <elocation-id>1940</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>19</day>
                    <month>6</month>
                    <year>2026</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2017 Chau A et al.</copyright-statement>
                <copyright-year>2017</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/6-1940/pdf"/>
            <abstract>
                <p>Ring chromosome 18 has a highly variable phenotype, depending on the extent of distal arm deletions. It is most commonly presented as a combination of 18p- and distal 18q- syndrome. IgA deficiency and autoimmune diseases have been previously described in these patients. Seven cases of juvenile rheumatoid arthritis (JRA) have been reported. Here we report the first case of late onset rheumatoid arthritis (RA) in a 32 year old Dominican woman with hypothyroidism, vitiligo, IgA deficiency, interstitial lung disease (ILD), cystic bronchiectasis, and features consistent with 18p- and distal 18q syndrome. Comparative genome hybridization analysis showed a del(18p11.21p11.32), dup(18q11.21-q22.1), and del(18q22.1-q23). Chromosomal analysis and fluorescence in situ hybridization showed three cell lines. One cell line was detected with a dicentric ring chromosome, another with duplication of the long arm and no short arm, and lastly a long arm terminal deletion of 18. The multiple autoimmune findings in our patient lends further support to the idea of loci on chromosome 18 playing a role in autoimmune disease expression. Late onset RA and ILD in a patient with chromosome 18 abnormalities are novel findings and are additional conditions to be aware of in this population.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>ring chromosome 18</kwd>
                <kwd>rheumatoid arthritis</kwd>
                <kwd>interstitial lung disease</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>Changes in the structure of chromosome 18 are implicated in a number of conditions affecting health and development. 18p- and distal 18q- syndrome has been estimated to occur in 1/50,000 and 1/40,000 live births, respectively. The characteristics of 18p- syndrome are wide ranging and include speech delay, holoprosencephaly spectrum, micrognathia, ptosis, flat nasal bridge, wide mouth with short upper lip, excessive dental caries, large protruding ears, and skeletal abnormalities. 18q- syndrome also presents with a wide variety of clinical features that commonly includes foot anomalies, carp like mouth, midface hypoplasia, cleft palate, cleft lip, inner epicanthal folds, slanted palpebral fissures, narrow or atretic external auditory canals and low set ears. Features common to both syndromes include intellectual disability, short stature, microcephaly, tone abnormalities, seizures, hearing loss and cardiac defects. The phenotypic severity of either condition appears to be correlated with the amount of genetic material affected
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>
                </sup>.</p>
            <p>Ring chromosome 18, or r(18), is a rarer condition that most commonly forms when there is breakage in both chromosome arms, fusion of those breakpoints and the subsequent loss of the distal fragments
                <sup>
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. Ring chromosomes can also result from terminal deletions as well as contiguous duplication, with some of these cases demonstrating inversion of these duplications and thus an inv dup del rearrangement mechanism. As a result of the inconsistent amount of duplication and hemizygosity of the distal ends, the r(18) phenotype is extremely variable. Clinical characteristics are typically a combination of 18p- and distal 18q- syndrome
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>.</p>
            <p>IgA deficiency and immunological diseases such as type 1 diabetes mellitus (T1DM), juvenile rheumatoid arthritis (JRA), Grave&#x2019;s disease, hypothyroidism, and vitiligo have been reported in a number of individuals with 18p-, 18q-, and to a lesser extent r(18)
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-8">8</xref>
                </sup>. These numerous reports may represent chance relationships or suggest true genetic linkages. To the best of our knowledge, there have been seven reported cases of chromosome 18 abnormalities and JRA (see 
                <xref ref-type="table" rid="T1">Table 1</xref>). Here we report the first case of late onset rheumatoid arthritis (RA) associated with mosaic 18p-, distal 18q-, and r(18) in a 32 year old Dominican woman with intellectual disability, hypothyroidism, vitiligo, IgA deficiency, interstitial lung disease (ILD), cystic bronchiectasis, and features consistent with both 18p- and distal 18q- syndrome.</p>
            <table-wrap id="T1" orientation="portrait" position="anchor">
                <label>Table 1. </label>
                <caption>
                    <title>Clinical comparisons between previously reported chromosome 18 abnormalities, and our case.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">Authors</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Syndrome</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Sex</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Age of
                                <break/>onset</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Joint involvement</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Extra-articular
                                <break/>manifestations</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Lab
                                <break/>studies</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Other
                                <break/>immunological
                                <break/>and endocrine
                                <break/>problems</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Major abnormalities</th>
                            <th align="left" colspan="1" rowspan="1" valign="top">Developmental
                                <break/>problems</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Finley 
                                <italic toggle="yes">et al.</italic>
                                <sup>
                                    <xref ref-type="bibr" rid="ref-6">6</xref>
                                </sup>
                                <break/>(1972)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18p-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">F</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">9 months</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Pain/swelling in wrists,
                                <break/>R knee, R ankle;
                                <break/>contractures in elbows,
                                <break/>knees, hips</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Fever, rash,
                                <break/>hepatospleno-
                                <break/>megaly</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">+ANA</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Short stature, hypertelorism,
                                <break/>epicanthal folds, flat nasal
                                <break/>ridge, short fifth finger,
                                <break/>elevated triradius</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Mild MR, delayed
                                <break/>speech</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Petty 
                                <italic toggle="yes">et al.</italic>
                                <sup>
                                    <xref ref-type="bibr" rid="ref-7">7</xref>
                                </sup>
                                <break/>(1987)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">r(18)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">M</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">11 years</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Pain/swelling in knees,
                                <break/>ankles; contractures
                                <break/>and effusions in knees
                                <break/>X-ray: wnl</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">- ANA
                                <break/>+ RF</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">IgA deficiency</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Tetralogy of Fallot,
                                <break/>microcephaly, short
                                <break/>stature, midface dysplasia,
                                <break/>nystagmus, malabsorption</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Severe MR</td>
                        </tr>
                        <tr>
                            <td colspan="1" rowspan="1"/>
                            <td align="left" colspan="1" rowspan="1" valign="top">Interstitial 18q- **</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">F</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">5.5 years</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Pain/swelling in
                                <break/>knees, R wrist, ankles;
                                <break/>effusions in knees
                                <break/>X-ray: wnl</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Erythematous
                                <break/>macules,
                                <break/>urticaria</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">- ANA
                                <break/>- RF</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Reduced IgG
                                <break/>and IgM</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Short stature, hypertelorism,
                                <break/>flat nasal bridge, broad
                                <break/>palate, bifid uvula, external
                                <break/>auditory canal atresia, large
                                <break/>mouth, unilateral simian
                                <break/>crease, short/broad hands</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Moderate MR</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Hansen 
                                <italic toggle="yes">et al.</italic>
                                <break/>(1994)
                                <sup>
                                    <xref ref-type="bibr" rid="ref-8">8</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Distal 18q-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">M</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4 years</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Pain/swelling in knees,
                                <break/>L ankle; effusions in
                                <break/>knees; contracture
                                <break/>L knee; XR: TMJ
                                <break/>arthritic changes,
                                <break/>L knee &gt;subchondral
                                <break/>erosions, L patella
                                <break/>enlargement</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Uveitis</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">+ANA
                                <break/>- RF</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Elevated IgG
                                <break/>and IgM</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Hypospadias, umbilical
                                <break/>hernia, cleft left palate,
                                <break/>hypertelorism, atretic ear
                                <break/>canals, severe hearing
                                <break/>loss, hypotonia, joint
                                <break/>hypermobility, syndactylia of
                                <break/>second and third toes</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Normal IQ range with
                                <break/>learning difficulty,
                                <break/>delayed speech,
                                <break/>attention, visual-
                                <break/>spatial orienting, fine
                                <break/>and gross motor skill
                                <break/>difficulties</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Czak&#x00f3; 
                                <italic toggle="yes">et al.</italic>
                                <break/>(2002)
                                <sup>
                                    <xref ref-type="bibr" rid="ref-10">10</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Translocation:18p-,
                                <break/>20p trisomy</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">F</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">6 years</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Large joints, small
                                <break/>finger joints</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">+ESR
                                <break/>+CRP
                                <break/>+ Waaler Rose test</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Milk protein
                                <break/>intolerance</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Oval flat face, upslanting
                                <break/>palpebral fissures, periorbital
                                <break/>fullness, hypoplastic
                                <break/>midface, flat nose, down
                                <break/>turned corners of mouth,
                                <break/>muscular hypotonia</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Severe psychomotor
                                <break/>retardation</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Rosen 
                                <italic toggle="yes">et al.</italic>
                                <break/>(2004)
                                <sup>
                                    <xref ref-type="bibr" rid="ref-5">5</xref>
                                </sup>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Distal 18q-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">F</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">8 years</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Pain/swelling, effusions
                                <break/>in knees, R SCJ
                                <break/>X-ray: knee effusions
                                <break/>MRI: R SCJ synovitis</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">+ ANA
                                <break/>- RF
                                <break/>DRB*11 allele</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Elevated IgG</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">ASD, short stature, left
                                <break/>aural atresia, right external
                                <break/>auditory canal atresia,
                                <break/>prominent nasal pyramids,
                                <break/>hypoplastic alae nasi, broad
                                <break/>mouth, thin upper lip, short
                                <break/>philtrum, joint hypermobility</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Normal IQ range with
                                <break/>learning difficulty</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Recacalti 
                                <italic toggle="yes">et al.</italic>
                                <sup>
                                    <xref ref-type="bibr" rid="ref-4">4</xref>
                                </sup>
                                <break/>(2010)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">18p-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">F</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">&lt;5
                                <break/>years?</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">?</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">?</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">?</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Seizures, microcephaly,
                                <break/>midline anomaly (ectopic
                                <break/>neurohypophysis) growth
                                <break/>retardation, blue sclera,
                                <break/>sparse hair, upslanting
                                <break/>palpebral fissures,
                                <break/>epicanthal folds, high
                                <break/>arched palate, low set, ears,
                                <break/>micrognathia, retrognathia,
                                <break/>excessive caries, cupid
                                <break/>bow lips, long philtrum,
                                <break/>short neck, short and broad
                                <break/>hallux, sacral dimple,
                                <break/>hypotonia</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">MR, speech delay,
                                <break/>psychomotor
                                <break/>retardation</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Our case</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">r(18)</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">F</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">19 years</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Pain/swelling in
                                <break/>L shoulder, knees,
                                <break/>wrists, hands
                                <break/>X-ray: knee effusions;
                                <break/>osteopenia in L foot,
                                <break/>ankle, hands, wrists</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">ILD?</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">+ ANA
                                <break/>+ RF
                                <break/>- CCP
                                <break/>+ESR
                                <break/>+CRP</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">IgA deficiency,
                                <break/>hypothyroidism,
                                <break/>vitiligo</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Short stature, microcephaly,
                                <break/>cleft palate, bifid uvula,
                                <break/>midface hypoplasia, carp-
                                <break/>like mouth, excessive dental
                                <break/>caries, hearing loss, club
                                <break/>foot</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">Severe MR</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p>+ = present, - = absent, ? = not reported; F = female, M = male, R = right, L = left; ANA = antinuclear antibodies, RF = rheumatoid factor, CCP = cyclic citrullinate peptide; ASD = atrial septal defect, IQ = intelligence quotient, MR = mental retardation ** Possible drug related etiology, occurred after trimethoprim sulfamethoxazole use with intermittent reoccurrences</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
        </sec>
        <sec>
            <title>Case report</title>
            <sec>
                <title>Patient information</title>
                <p>The patient was a 32-year-old Dominican woman who presented to the emergency room with fever, hypoxia, wheezing, shortness of breath, cough productive of yellow sputum, and coarse breath sounds. She was hospitalized three months prior for community acquired pneumonia. She was subsequently admitted to the general medicine service for management of presumed healthcare associated pneumonia.</p>
                <p>She immigrated with her family to the US from the Dominican Republic 2 years ago. Unfortunately, we have no access to previous medical records and past medical history was obtained from her mother. The patient is the second child of a healthy non-consanguineous couple. At the time of birth, mother and father were 25 and 30 years old, respectively. Prenatal ultrasound was not done. She was born full term with birth weight of 2948 g. At birth, the patient was found to have an abnormal head shape, enlarged heart and heart murmur that resolved by 4 years after taking an unspecified oral medication. Cleft palate and left clubfoot were surgically repaired at age 3 and 4 years, respectively. Dentition was initially normal, however teeth fell early or had extensive caries. At age 9 years skin and hair depigmentation began and she was diagnosed with vitiligo. She is hypothyroid and maintained on levothyroxine. At age 18 years monthly menses began. Over the years hearing has deteriorated, necessitating louder cues to respond. At age 19 years she began to develop morning pain and swelling in her knees. Symptoms progressed to left shoulder, bilateral wrists, proximal interphalangeal and metacarpophalangeal joints. At age 31 years she was diagnosed with rheumatoid arthritis (RA) by the rheumatology service. At presentation she was on prednisone 5mg daily, methotrexate 17.5mg weekly, status post 2 doses of adalimumab 40mg every 2 weeks. Acetaminophen and diclofenac used as needed. She was previously also on sulfasalazine 1000mg twice daily but was discontinued due to aggressiveness. She was diagnosed with mild intermittent asthma in the past year.</p>
                <p>She began to walk at age 4 years. She never attended school, has a vocabulary of 10&#x2013;12 words, follows basic commands, independently feeds, dresses, and bathes herself. She has a 37 year old brother with mild learning disability; he completed school, works and lives independently. There was no family history of similar congenital defects or autoimmune disorders.</p>
                <p>On physical examination, her height was 135 cm and weight was 53 kg. Head was microcephalic with circumference of 51 cm. She was nonverbal and appears to fall under severe-profound intellectual disability. Skin, head and body hair was hypopigmented with a few patches of pigmentation and a large 2x1 cm left neck nevus. Midface is hypoplastic. Eyes were symmetrical with a left limbal dermoid cyst. Mouth was carp like with downturning corners. Residual posterior cleft palate and split uvula were present. Dentition was poor with several teeth broken, missing, or carious. No murmurs were appreciated. On lung exam, bilateral basilar crackles and scattered wheezes were appreciated. There was full range of motion in limbs and normal muscle tone. There was mild tenderness in left shoulder. Surgically corrected left foot noted.</p>
                <p>Laboratory results showed positive antinuclear antibody (ANA) at a titer of &lt;1:40, positive rheumatoid factor (RF) at 81.1 IU/mL, negative anti-citrullinated cyclic protein (anti-CCP) at 16AU, elevated erythrocyte sedimentation rate at 42 mm/hr and C-reactive protein at 1.3 mg/dL. Quantitative immunoarray revealed IgA deficiency at 88.5mg/dL, normal IgM and IgG.</p>
                <p>Radiographic evaluation revealed osteopenia of left foot, ankle, hands and wrists. Images of knees revealed small left and trace right joint effusion. Transthoracic echocardiogram showed moderate tricuspid valve regurgitation and moderate pulmonary hypertension.</p>
                <p>During this admission, high resolution CT chest showed scattered areas of cystic bronchiectasis and bilateral right upper lobe predominant ground glass opacities. She was subsequently treated for bronchiectasis exacerbation with zosyn for a total of 7 days. She improved clinically and was discharged with extensive follow up appointments.</p>
            </sec>
            <sec>
                <title>Cytogenetics</title>
                <p>Her primary care physician referred her to the genetics department in our hospital for suspected chromosomal abnormalities. Comparative genome hybridization (aCGH) was done using the custom designed Agilent 44,000 oligonucleotide probes microarray. Probes were placed approximately every 50&#x2013;100 kb across the entire euchromatic genome with a resolution of 500 kb. The probe density at clinically relevant regions was about 5&#x2013;10 kb, thus increasing the resolution to 50 kb in targeted regions based on hg19. The aCGH revealed a 14 Mb deletion at 18p11.21-p11.32 (148963-14188180)x1, a 47.8Mb duplication at 18q11.21-q22.1 (18542074-66367715)x3, and a 11.6 Mb deletion at 18q22.1-q23 (66377285-78010032)x1 (
                    <xref ref-type="fig" rid="f1">Figure 1a</xref>). Standard chromosomal analysis and fluorescence in situ hybridization (FISH) revealed a mosaic condition. One cell line contained a dicentric ring chromosome. Another cell line showed duplication of the long arm and no short arm, 46XX, r(18)(q11.3q23) (
                    <xref ref-type="fig" rid="f1">Figure 1b&#x2013;c</xref>). A third cell line was detected with terminal long arm deletion, 46XX del(18)(q22). Her mother had a normal analysis performed with her consent, alongside the patients&#x2019; analysis. The paternal sample was not available.</p>
                <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                    <label>Figure 1. </label>
                    <caption>
                        <p>
                            <bold>A</bold>. CGH panel illustrates deletions on distal arms (red) and duplication of proximal long arm (blue). 
                            <bold>B</bold>. Karyotype in metaphase showing a ringed chromosome 18. 
                            <bold>C</bold>. FISH analysis showing a ringed chromosome 18.</p>
                    </caption>
                    <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/12465/1aec0aa9-fe68-42eb-bf09-05df2918dcc7_figure1.gif"/>
                </fig>
            </sec>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>The described chromosomal abnormalities are most likely 
                <italic toggle="yes">de novo,</italic> since maternal analysis was normal and her father was normal in appearance and health
                <italic toggle="yes">.</italic> Furthermore, ring chromosomes usually arise 
                <italic toggle="yes">de novo</italic>, with only 1% inherited
                <sup>
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. Of the inherited cases, 90% are maternal since the presence of a ring blocks spermatogenesis and induces infertility in males.</p>
            <p>Consistent with previously reported cases of r(18) (see 
                <xref ref-type="table" rid="T1">Table 1</xref>), our patient had many of the characteristics associated with both 18p- and distal 18q- syndrome. The features shared between the two conditions include intellectual disability, short stature, microcephaly, IgA deficiency, autoimmune disorders (RA, vitiligo, hypothyroidism), and likely conductive hearing loss. Features specific to 18p- include excessive dental caries, while those specific to distal 18q- include cleft palate, carp shaped mouth, and clubfoot. Duplication did not appear to cause any distinguishing Edwards syndrome manifestations such as clenched fist, rocker bottom feet, severe organ involvement, and failure to thrive.</p>
            <p>The unique feature of our patient was her late onset of RA compared to the early JRA previously reported
                <sup>
                    <xref ref-type="bibr" rid="ref-4">4</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-8">8</xref>,
                    <xref ref-type="bibr" rid="ref-10">10</xref>
                </sup>. Our patient was RF positive, anti-CCP negative and met 9/10 of the 2010 American College of Rhematology (ACR) Clinical Classification Criteria for RA
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>
                </sup>. To the best of our knowledge there have been seven reported, and six published, cases of RA associated with chromosome 18 abnormalities (
                <xref ref-type="table" rid="T1">Table 1</xref>). Daentl first mentioned an unpublished case of JRA in a patient with 18p- and IgA deficiency
                <sup>
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. In the first published case, Finley 
                <italic toggle="yes">et al.</italic> reported a 9-month-old female with 18p-, swelling and contractures in many joints, fever, rash, and hepatosplenomegaly, consistent with JRA
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>
                </sup>. JRA has subsequently been associated with cases of 18q- as well
                <sup>
                    <xref ref-type="bibr" rid="ref-5">5</xref>,
                    <xref ref-type="bibr" rid="ref-7">7</xref>,
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>.</p>
            <p>The exact genes involved with RA and autoimmune disease development in chromosome 18 abnormalities are still not well defined. There is a suggested link between PTPN2 (protein tyrosine phosphatase non-receptor type 2), located at 18p11.2-11.3, and RA and T1DM
                <sup>
                    <xref ref-type="bibr" rid="ref-11">11</xref>,
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>. Genome wide studies have shown evidence for the association of the PTPN2 locus with RA susceptibility in both Japanese and European populations
                <sup>
                    <xref ref-type="bibr" rid="ref-11">11</xref>,
                    <xref ref-type="bibr" rid="ref-13">13</xref>
                </sup>. A case similar to ours was reported by Jain 
                <italic toggle="yes">et al.</italic> with 
                <italic toggle="yes">de novo</italic> r(18), del(18q23-18qter) and del(18p11.3-18pter) associated with hyperthyroidism, T1DM, vitiligo, and IgA deficiency, but not RA
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. Their case had a more distal deletion that likely spared PTPN2. Another autoimmune critical region was proposed on 18p, with molecular breakpoints at 12,316,423-1,231,7830; interestingly, PTPN2 is not in this region
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>. The genetic basis of autoimmune disease is not as well established in 18q- compared to 18p-. On the long arm, Merriman 
                <italic toggle="yes">et al.</italic> proposed a locus at 18q12-21 that influences development of autoimmune diseases
                <sup>
                    <xref ref-type="bibr" rid="ref-14">14</xref>
                </sup>. Another gene of interest is NFATc1 (nuclear factor of activated T cells) at 18q23, implicated in maintaining the programmed death receptor (PD-1) and ligand (PD-L) pathway that is essential for regulatory T cells to terminate immune responses and protect against autoimmunity
                <sup>
                    <xref ref-type="bibr" rid="ref-15">15</xref>,
                    <xref ref-type="bibr" rid="ref-16">16</xref>
                </sup>. It is difficult to establish a definitive genotype-phenotype association, but it appears plausible that this proposed autoimmune critical region and PTPN2 on the short arm, as well as NFATc1 on the long arm may play a part in the autoimmune diseases seen in our patient.</p>
            <p>Overall, adult RA has a poorer outcome compared to JRA
                <sup>
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup>. Mortality rates in RA patients are increased due to medication related infections, gastrointestinal bleeding as well as extra-articular pulmonary, renal disease, and cardiovascular manifestations
                <sup>
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup>. Our patient was also found to have ILD, bronchiectasis, and pulmonary hypertension. To the best of our knowledge, there is no known connection between interstitial lung pathologies and chromosome 18 abnormalities. However, ILD and bronchiectasis are known extra-articular manifestations of RA. In a population study, the lifetime risk of developing ILD was 7.7% for RA patients and 0.9% for non-RA subjects
                <sup>
                    <xref ref-type="bibr" rid="ref-18">18</xref>
                </sup>. The classic presentation is a reticular, reticulonodular or honeycomb pattern in the lung bases.</p>
            <p>The patient was also on several medications known to cause drug-induced interstitial lung disease (DI-ILD) including: methotrexate, adalimumab, sulfasalazine, and diclofenac
                <sup>
                    <xref ref-type="bibr" rid="ref-19">19</xref>
                </sup>. The predominantly bilateral patchy ground-glass opacities with upper lobe predominance in our patient do suggest a hypersensitivity pneumonitis picture. Unfortunately, ground-glass opacities are non-specific and pattern of involvement on HRCT does not always correspond to histological findings. Medications known to cause DI-ILD were discontinued in our patient, with further management focusing on better characterizing the extent and etiology of ILD and continuation of steroid therapy.	</p>
            <p>	 Our report describes the first case of late onset RA associated with mosaic 18p-, 18q- and dicentric r(18). The complex rearrangements were detected by aCGH, karyotype and FISH. Her syndrome has features of both 18q- and 18p-, including multiple autoimmune disorders that support the idea of genetic loci on chromosome 18 playing a role in disease expression. Additionally, the finding of ILD - whether caused by RA, drug exposure, or an unexplored linkage - is an important condition to be aware of in patients with chromosome 18 abnormalities and autoimmune diseases. Ultimately, further studies are required to better define the genotype-phenotype associations that will further the clinical management of these patients.</p>
        </sec>
        <sec>
            <title>Consent</title>
            <p>Written and informed consent was obtained from the mother, who was the designated health care proxy prior to publishing this case report, for publication of any potentially identifiable clinical data that may be associated.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgements</title>
            <p>We would like to thank the patient and her family for their participation.</p>
        </ack>
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    <sub-article article-type="reviewer-report" id="report27903">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.12465.r27903</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Cody</surname>
                        <given-names>Jannine D.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r27903a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-3034-8687</uri>
                </contrib>
                <aff id="r27903a1">
                    <label>1</label>Department of Pediatrics, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>27</day>
                <month>11</month>
                <year>2017</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2017 Cody JD</copyright-statement>
                <copyright-year>2017</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport27903" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.11539.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This manuscript describes a single 32 year old woman with Ring 18 and rheumatoid arthritis. Overall the manuscript is well written, however there are several items that need further work before publicaiton. 
                <list list-type="order">
                    <list-item>
                        <p>Most of the literature on Ring 18 has been omitted. The paper would benefit from a better review of Ring 18 as opposed to mostly 18p- and 18q-. Has the lung disease eve been reported?</p>
                    </list-item>
                    <list-item>
                        <p>The methods and data that determined the actual chromosome content are missing. The percent that each cell type is present in the blood as well as the FISH studies definitively demonstrating each should be included. From the text it is not clear if the &#x201c;duplication of the long arm&#x201d; is present as a ring or an isochromosome. The aCGH showing net copy number suggests that not all of the long arm is duplicated since a larger proportion of cells have an 18q terminal deletion than have an 18p terminal deletion. What percent of the cells actually have a ring chromosome?</p>
                    </list-item>
                    <list-item>
                        <p>The interpretation of the FISH data needs to be described more fully. Why are there two BCL2 probes? I don&#x2019;t see a D18Z1 signal?</p>
                    </list-item>
                    <list-item>
                        <p>The table needs to be made more clear in its title that it only includes RA cases and not all Ring 18 or 18q-, 18p- cases (at least I think that is the intent).</p>
                    </list-item>
                    <list-item>
                        <p>In the first paragraph of the discussion, the last sentence needs a reference.</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Not applicable</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>No source data required</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>No</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report27904">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.12465.r27904</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Kosztol&#x00e1;nyi</surname>
                        <given-names>Gy&#x00f6;rgy</given-names>
                    </name>
                    <xref ref-type="aff" rid="r27904a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r27904a1">
                    <label>1</label>Department of Medical Genetics, Clinical Center, University of P&#x00e9;cs, P&#x00e9;cs, Hungary</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>23</day>
                <month>11</month>
                <year>2017</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2017 Kosztol&#x00e1;nyi G</copyright-statement>
                <copyright-year>2017</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport27904" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.11539.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This is a well documented case report which may contribute to our knowledge on the clinical consequences of chromosome 18 abnormalities. I suggest to accept the MS for publication on condition that the authors consider a major and some minor remarks for modification.</p>
            <p> </p>
            <p> 
                <bold>Major remark</bold>
            </p>
            <p> </p>
            <p> The routine cytogenetics description is too short. Nothing is written about the percentages of the "mosaic cell lines&#x201d; (as the authors write), although one of the unique characteristics of ring chromosomes is their dynamic nature. As a result of mitotic difficulties, a ring chromosome is subject of additional cytogenetic mutations, resulting in continuous generation of secondary aneuploidy cells. Accordingly, this dynamic mutations series may manifest themselves as "mosaic cell lines&#x201d;, however, the survival of such cells as cell line, as well as the explanation of their presence being "cell lines&#x201d; is questionable. I would recommend to refer to this wildely accepted explanation for the presence of differentially shaped chromosomes in patients with ring chromosome, at least as an alternativ possibility. (e.g. Kosztol&#x00e1;nyi G: Does "ring syndrome" exist? Hum.Genet. 1987; 75:174-179) &#x00a0;</p>
            <p> </p>
            <p> 
                <bold>Minor remark</bold>
            </p>
            <p> </p>
            <p> Some peculiarity of the case should be highlighted with more emphasis. E.g., Detecting a chromosome abnormality in a patient at the age of 32 is rare &#x2013; it should be highlighted in the paper. Also the extreme severity of the somatic and mental underdevelopment should be pointed on abstract.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Not applicable</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>No source data required</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
</article>
