<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.15423.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Osteogenic potential of gingival stromal progenitor cells cultured in platelet rich fibrin is predicted by core-binding factor subunit-&#x03b1;1/Sox9 expression ratio (
                    <italic>in vitro</italic>)</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved, 2 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Nugraha</surname>
                        <given-names>Alexander Patera</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-7427-7561</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Narmada</surname>
                        <given-names>Ida Bagus</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-2453-9601</uri>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Ernawati</surname>
                        <given-names>Diah Savitri</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Dinaryanti</surname>
                        <given-names>Aristika</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Hendrianto</surname>
                        <given-names>Eryk</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Ihsan</surname>
                        <given-names>Igo Syaiful</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Riawan</surname>
                        <given-names>Wibi</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a5">5</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Rantam</surname>
                        <given-names>Fedik Abdul</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0001-8182-1465</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a3">3</xref>
                    <xref ref-type="aff" rid="a6">6</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Graduate School of Immunology, Postgraduate School, Universitas Airlangga, Surabaya, 60132, Indonesia</aff>
                <aff id="a2">
                    <label>2</label>Orthodontic Department, Faculty of Dental Medicine, Universitas Airlangga, Surabaya, 60132, Indonesia</aff>
                <aff id="a3">
                    <label>3</label>Stem Cell Research and Development Center, Universitas Airlangga,, Surabaya, 60132, Indonesia</aff>
                <aff id="a4">
                    <label>4</label>Oral Medicine Department, Faculty of Dental Medicine, Universitas Airlangga, Surabaya, 60132, Indonesia</aff>
                <aff id="a5">
                    <label>5</label>Biochemistry Biomolecular Laboratory, Faculty of Medicine, Universitas Brawijaya, Malang, 65145, Indonesia</aff>
                <aff id="a6">
                    <label>6</label>Virology and Immunology Laboratory, Microbiology Department, Faculty of Veterinary Medicine, Faculty of Veterinary Medicine, Universitas Airlangga., Surabaya, 60132, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:fedik-a-r@fkh.unair.ac.id">fedik-a-r@fkh.unair.ac.id</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>25</day>
                <month>7</month>
                <year>2018</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2018</year>
            </pub-date>
            <volume>7</volume>
            <elocation-id>1134</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>10</day>
                    <month>7</month>
                    <year>2018</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Nugraha AP et al.</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/7-1134/pdf"/>
            <abstract>
                <p>

                    <bold>Background</bold>: Alveolar bone defect regeneration has long been problematic in the field of dentistry. Gingival stromal progenitor cells (GSPCs) offer a promising solution for alveolar bone regeneration. In order to optimally differentiate and proliferate progenitor cells, growth factors (GFs) are required. Platelet rich fibrin (PRF) has many GFs and can be easily manufactured. Core-binding factor subunit-&#x03b1;1 (CBF-&#x03b1;1) constitutes a well-known osteogenic differentiation transcription factor in SPCs. Sox9, as a chondrogenic transcription factor, interacts and inhibits CBF-&#x03b1;1, but its precise role in direct 
                    <italic toggle="yes">in vitro</italic> osteogenesis remains unknown. GSPCs cultured 
                    <italic toggle="yes">in vitro</italic> in PRF to optimally stimulate osteogenic differentiation has been largely overlooked. The aim of this study was to analyze GSPCs cultured in PRF osteogenic differentiation predicted by CBF-&#x03b1;1/Sox9.</p>
                <p>
                    <bold>Methods</bold>: This study used a true experimental with post-test only control group design and random sampling. GPSCs isolated from the lower gingiva of four healthy, 250-gram, 1-month old, male Wistar rats (
                    <italic toggle="yes">Rattus Novergicus</italic>) were cultured for two weeks, passaged every 4&#x2013;5 days. GSPCs in passage 3&#x2013;5 were cultured in five M24 plates (N=108; n=6/group) for Day 7, Day 14, and Day 21 in three different mediums (control negative group: &#x03b1;Modified Eagle Medium; control positive group: High Glucose-Dulbecco&#x2019;s Modified Eagle Medium (DMEM-HG) + osteogenic medium; Treatment group: DMEM-HG + osteogenic medium + PRF). CBF-&#x03b1;1 and Sox9 were examined with ICC monoclonal antibody. A one-way ANOVA continued with Tukey HSD test (p&lt;0.05) based on Kolmogorov&#x2013;Smirnov and Levene's tests (p&gt;0.05) was performed.</p>
                <p>
                    <bold>Results</bold>: The treatment group showed the highest CBF-&#x03b1;1/Sox9 ratio (16.00&#x00b1;3.000/14.33&#x00b1;2.517) on Day 7, while the lowest CBF-&#x03b1;1/Sox9 ratio (3.33&#x00b1;1.528/3.67&#x00b1;1.155) occurred in the control negative group on Day 21, with significant difference between the groups (p&lt;0.05).</p>
                <p>
                    <bold>Conclusion</bold>: GSPCs cultured in PRF had potential osteogenic differentiation ability predicted by the CBF-&#x03b1;1/sox9 ratio.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Core-Binding Factor Subunit-&#x03b1;</kwd>
                <kwd>Gingival Stromal Progenitor Cells</kwd>
                <kwd>Osteogenic Differentiation</kwd>
                <kwd>Platelet Rich Fibrin</kwd>
                <kwd>Sox9.</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1" xlink:href="http://dx.doi.org/10.13039/501100009509">
                    <funding-source>Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia</funding-source>
                    <award-id>2146/D3/PG/2017</award-id>
                </award-group>
                <funding-statement>The research was funded by the Progam Menuju Doktor Sarjana Unggul (PMDSU) Batch III of the Ministry of Research, Technology and Higher Education of the Republic of Indonesia (Kemenristekdikti RI) (letter of appointment agreement number, 1035/D3/PG/2017; grant number 2146/D3/PG/2017).</funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>Dental caries represents a major global dental public health problem because of their high prevalence. The World Health Organization reported that almost 90% of people worldwide suffered from caries
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>
                </sup>. Basic Health Research of National Health (RISKESDAS) in 2013 reported that 93,998,727 Indonesians, 53.2% of the population, suffered from active caries
                <sup>
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. Dental caries must be treated appropriately because, if neglected, they become so severe that the affected teeth must be extracted. Indeed, the most common cause of tooth loss is dental caries
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. Populations experiencing low socioeconomic conditions demonstrate higher prevalence and extent of tooth loss because of extremely limited access to dental treatment
                <sup>
                    <xref ref-type="bibr" rid="ref-4">4</xref>
                </sup>.</p>
            <p>Tooth extraction has been the most common form of dental treatment performed in Indonesia that can lead to bone defects. RISKESDAS statistics dating from 2014 indicated that treatment involving tooth extraction reached as high as 79.6% of cases
                <sup>
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. A previous study of tooth extraction-related complications revealed the prevalence of fractures (31.82%), bleeding (4.54%) and swelling (2.27%)
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>
                </sup>. Tooth extraction can lead to alveolar bone resorption and the destruction of alveolar bone components. Moreover, it may lead to resorption of the jawbone
                <sup>
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. Tooth extraction followed by buccolingual and apicocoronal dimension reduction of the alveolar ridge at the edentulous site might be performed due to bone defects
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>
                </sup>.</p>
            <p>Alveolar bone defect regeneration has long represented a challenge in the field of dentistry. Various efforts have been made to accelerate bone regeneration, such as using bone grafts. The most current treatment performed in relation to the alveolar bone involves the use of platelet rich fibrin (PRF). PRF materials encouraging bone regeneration therapy have significantly improved the clinical outcomes stemming from the treatment of infrabony defects. PRF has achieved this through the maintaining of space for tissue regeneration by inducing an osteoinductive and osteoconductive effect in the alveolar bone defect area
                <sup>
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>.</p>
            <p>Nowadays, alveolar bone defect treatment involving PRF using stromal progenitor cells (SPCs) is becoming increasingly widespread. SPCs have the advantage of being able to repair and regenerate various organs and tissue, and have been considerably used in bone tissue engineering, which offers encouraging solutions for bone regeneration
                <sup>
                    <xref ref-type="bibr" rid="ref-10">10</xref>,
                    <xref ref-type="bibr" rid="ref-11">11</xref>
                </sup>. SPCs are non-hematopoietic stromal cells. They have multipotent capabilities, including immunomodulators and immunoregulators, paracrine, autocrine action, and migrate directly to the tissue initiating healing and regeneration making SPCs particularly suitable for regenerative medicine development
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-14">14</xref>
                </sup>.</p>
            <p>The orofacial region is a unique and rich source of SPCs. Those contained in the oral cavity and tooth tissue represent an emerging interesting and topical object for investigation because isolating progenitor cells from the oral tissues can be achieved with minimal invasive procedures compared to bone marrow mesenchymal stem cell (BMSC) obtainment. The utilization of progenitor cells from the oral cavity is still rarely studied and applied. However, it is potentially advantageous for tissue regeneration and, therefore, merits further investigation
                <sup>
                    <xref ref-type="bibr" rid="ref-15">15</xref>
                </sup>.</p>
            <p>The SPCs that are potentially useful as part of regenerative alveolar bone therapy are gingival stromal progenitor cells (GSPCs) derived from hyperplastic gingival tissue (gum overgrowth) by means of a gingivectomy. GSPCs have phenotypic characteristics and abilities similar to those of BMSCs. GSPCs possess self-renewal capabilities and also demonstrate the specific ability to regenerate into alveolar bone when transplanted into immunocompromised mice. GSPCs also specifically induce bone matrix formation in lamellar structures by recruiting host cells
                <sup>
                    <xref ref-type="bibr" rid="ref-11">11</xref>,
                    <xref ref-type="bibr" rid="ref-15">15</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup>. The osteogenic ability of GSPCs needs to be explored for further application and therapy.</p>
            <p>During skeletal formation, master transcription genes such core-binding factor subunit-&#x03b1; (CBF-&#x03b1;1) and Osterix have been identified
                <sup>
                    <xref ref-type="bibr" rid="ref-18">18</xref>
                </sup>. However, their specific and distinct roles in various tissue types are still unclear. Sox9 is well known as a master gene regulator during chondrogenic differentiation, while CBF-&#x03b1;1 plays an important role during osteogenic differentiation. GSPCs, as osteoprogenitors and chondroprogenitors, express Sox9 and Runx2 during skeletal formation condensation. There is also a direct interaction between Sox9 and CBF-&#x03b1;1, which inhibits Sox9 activity
                <sup>
                    <xref ref-type="bibr" rid="ref-18">18</xref>
                </sup>. Sox9 inhibitory effect on osteoblast maturation through CBF-&#x03b1;1 is an essential mechanism for osteo-chondroprogenitor fate determination
                <sup>
                    <xref ref-type="bibr" rid="ref-19">19</xref>
                </sup>.</p>
            <p>In order for GSPCs to differentiate and proliferate optimally they require growth factors (GFs), various varieties of which are shown to promote osteogenic differentiation of SPCs 
                <italic toggle="yes">in vitro</italic>. PRF is predicted to be combined to promote SPCs osteogenic differentiation and ensure mineralization 
                <italic toggle="yes">in vitro</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref-19">19</xref>
                </sup>. PRF can be easily produced by centrifuging without anticoagulants. PRF is rich in GFs consisting of platelet derived growth factor-&#x03b2; (PDGF-&#x03b2;), transforming growth factor-&#x03b2;1 (TGF&#x03b2;-1), vascular endothelial growth factor (VEGF) and insulin growth factor (IGF-I). PRF provides an effective scaffold to facilitate osteogenic differentiation of GSPCs
                <sup>
                    <xref ref-type="bibr" rid="ref-20">20</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-23">23</xref>
                </sup>.</p>
            <p>The osteogenic differentiation of GSPCs can be detected by various osteogenic marker expressions, such as CBF-&#x03b1;1 expression. The observed osteogenic markers of GSPCs are CBF subunit-&#x03b1;1 (CBF-&#x03b1;1) and Sox9
                <sup>
                    <xref ref-type="bibr" rid="ref-24">24</xref>,
                    <xref ref-type="bibr" rid="ref-25">25</xref>
                </sup>. Nonetheless, there is insufficient information regarding Sox9&#x2019;s role in osteogenesis of GPSCs 
                <italic toggle="yes">in vitro</italic>. A study conducted by Stockl 
                <italic toggle="yes">et al.</italic> mentioned that Sox9 plays a positive proliferative role in inhibiting and delaying osteogenic differentiation in rat SPCs
                <sup>
                    <xref ref-type="bibr" rid="ref-26">26</xref>
                </sup>.</p>
            <p>The hypothesis of the current study is that GSPCs cultured in PRF can increase the CBF-&#x03b1;1/Sox9 expression ratio during osteogenic differentiation. Furthermore, a second objective was to analyze GSPCs cultured in PRF osteogenic differentiation predicted by CBF-&#x03b1;1/Sox9 expression ratio.</p>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <sec>
                <title>Ethical clearance</title>
                <p>This study received ethical clearance relating to animal subjects from the Ethics Research Committee, Faculty of Dental Medicine, Universitas Airlangga, Surabaya, East Java, Indonesia (number 289/HRECC.FODM/XII/2017). The research was conducted at an experimental laboratory within the Stem Cell and Tissue Engineering Development Centre, Universitas Airlangga.</p>
            </sec>
            <sec>
                <title>Research design and experimental animals</title>
                <p>The research was fully experimental with a post-test only control group design. Sample groups were selected by means of simple random number sampling. Each animal was assigned a unique number, which were picked out of a hat by a blindfolded researcher.</p>
                <p>The subjects consisted of male Wistar rats (
                    <italic toggle="yes">Rattus norvegicus</italic>; n=4), who were adapted to the environment for 7 days. Wistar rats were obtained and cared for at the Stem Cell Animal Laboratory, Universitas Airlangga. All animals were housed in polycarbonate cages, subjected to a 12-hour light-dark cycle at the constant temperature of 23&#x00b0;C, and fed a standard pellet diet (expanded pellets; Stepfield, UK) with tap water 
                    <italic toggle="yes">ad libitum</italic> at a temperature of 22&#x00b0;C&#x00b1;2&#x00b0;C.</p>
                <p>GPSCs were isolated from the lower gingival tissue of four 1-month old, healthy, mean weight = 250g, male rats through a gingivectomy, before the rats were euthanized with doses 60mg/body weight of ketamine and xylazine. Animal suffering was reduced when removing the GPSCs using rodent&#x2019;s anesthesia (intramuscular injection at 0.05&#x2013;0.1ml/10g body weight rodent anesthesia: ketamine, xylazine, acepromazine, and sterile isotonic saline; Sigma Aldrich, USA) following Duan 
                    <italic toggle="yes">et al&#x2019;s</italic> method
                    <sup>
                        <xref ref-type="bibr" rid="ref-23">23</xref>
                    </sup>.</p>
                <p>GPSCs was passaged every 4&#x2013;5 days following Rantam 
                    <italic toggle="yes">et al</italic>&#x2019;s SPCs culture method
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>
                    </sup>. GSPCs in passage 3&#x2013;5 were cultured in five M24 plates (Sigma-Aldrich) (N=108; n=6/group) until Day 7, Day 14 and Day 21 in three different culture mediums (control negative group, control positive group and treatment group; see below for details).</p>
                <p>Sample size (n=4 for GPSCs isolation; n=36 for PRF isolation) was based on Lemeshow's formula to determine minimum sample size</p>
            </sec>
            <sec>
                <title>Platelet rich fibrin isolation</title>
                <p>A different population of rats were used for PRF isolation (n=36; 36 month old; mean weight = 250g). These male Wistar rats were maintained as above. Blood was aspirated through the left ventricle of each animals&#x2019; heart, after anesthesia had been administered by injection using a 60mg/body weight dose of ketamine and a 3mg/body weight dose of xylazine (Sigma Aldrich). 1.5ml of blood was aspirated using a 3ml disposable syringe and then inserted in a vacutainer tube without an anticoagulant before being centrifuged at 3000 rpm/min for 10min (Kubota, Tokyo, Japan). The centrifuging was performed by inserting two balance tubes containing water with the same weight as the tube of blood. When the tube is removed from the centrifuge, three layers will appear that are divided into three sections; the lower section consists of red blood cells, the middle section contains PRF and the upper section is formed of acellular plasma. The PRF was then isolated after which the PRF was cut into small pieces using sterile scissors and inserted into each culture plate of the treatment group
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>,
                        <xref ref-type="bibr" rid="ref-28">28</xref>,
                        <xref ref-type="bibr" rid="ref-29">29</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Osteogenic differentiation in a combination of platelet rich fibrin and gingival stromal progenitor cells</title>
                <p>The analysis was conducted on three groups, consisting of two control groups and one experimental group.</p>
                <p>

                    <italic toggle="yes">GSPC treatment group:</italic> GSPCs were cultured with PRF and containing ITS plus, 2mM L-glutamine, 100&#x03bc;g/ml sodium pyruvate, 0.2mM ascorbic acid-2 phosphate, dexamethasone 10-7 M (GeneTex, Taiwan), 10ng/ml TGF-&#x03b2;3 and high-dose glucose-Dulbecco's Modified Eagle Medium (DMEM-HG) (Sigma Aldrich).</p>
                <p>

                    <italic toggle="yes">Positive control group:</italic> GSPCs were placed on an osteogenic medium culture plate of ITS plus, 2 mM L-glutamine, 100&#x03bc;g/ml sodium pyruvate 0.2mM ascorbic acid-2 phosphate, dexamethasone 10-7 M (GeneTex).</p>
                <p>

                    <italic toggle="yes">Negative control group:</italic> GSPCs were cultured with &#x03b1;Modified Eagle Medium (&#x03b1;MEM) (Sigma Aldrich).</p>
                <p>Every three days, every group cell medium was replaced. Osteogenic differentiation was evaluated on Day 7, 14, 21 culture cells groups
                    <sup>
                        <xref ref-type="bibr" rid="ref-16">16</xref>
                    </sup>.</p>
                <p>GSPCs cultured cells were coated with coverslips and, after incubation at 37&#x00b0;C for 1 - 2 hours, were fixed using 10% formaldehyde for 15 min. The coverslips were then rinsed four times with PBS and dried for several minutes. The cells were blocked with PBS and FBS 1% for 15&#x2013;30 minutes and washed with PBS four times. The samples were then examined following immunocytochemical staining by indirect technique using a 3.3'-diaminobenzidine stain kit (Pierce DAB Substrate Paint Kit 34002, Thermofisher
                    <sup>TM</sup>, Waltham, MA, USA) and monoclonal antibodies (Santa Cruz Biotechnology, Dallas, TX, USA): anti-CBF-&#x03b1;1 (mouse monoclonal; sc-101145) and anti-Sox9 (mouse monoclonal; sc-166505). CBF-&#x03b1;1 and Sox9 expression was read using a light microscope (CX22 Binocular, Olympus) at 200x magnification. Every cell expressing CBF1-&#x03b1; or Sox9 in one field was examined three times by three experts (WR, EH and FAR) and the mean was then calculated
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>,
                        <xref ref-type="bibr" rid="ref-30">30</xref>,
                        <xref ref-type="bibr" rid="ref-31">31</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Data analysis</title>
                <p>The data obtained was analyzed using ANOVA continued with Tukey HSD test (p&lt;0.05) based on a Saphiro-Wilk normality test and a Levene's variance of homogeneity test (p&gt;0.05). Data were analyzed using SPSS version 20.0 (IBM SPSS, Chicago, USA).</p>
                <p>The experiments were replicated 3 times (n=54). The data was then duplicated (n=108) using an estimation formula and SPSS (see 
                    <xref ref-type="other" rid="SF1">Supplementary File 1</xref> and 
                    <xref ref-type="other" rid="SF2">Supplementary File 2</xref>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-32">32</xref>
                    </sup>.</p>
            </sec>
        </sec>
        <sec sec-type="results">
            <title>Results</title>
            <p>The highest average CBF-&#x03b1;1 expression was in the treatment group on Day 7, whereas the lowest was in the control (-) group on Day 21 (
                <xref ref-type="fig" rid="f1">Figure 1</xref> and 
                <xref ref-type="fig" rid="f2">Figure 2</xref>). Sox9 expression had the highest mean value in the treatment group on Day 7, while its lowest value was in the negative control group on Day 21 (
                <xref ref-type="fig" rid="f3">Figure 3</xref> and 
                <xref ref-type="fig" rid="f4">Figure 4</xref>).</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Core-binding factor subunit-&#x03b1;1 (CBF-&#x03b1;1) expression in gingival stromal progenitor cells (GSPCs) of Wistar rats (
                        <italic toggle="yes">Rattus Novergicus</italic>).</title>
                    <p>(A-C) CBF-&#x03b1;1 expression in the negative control group; (D-F) CBF-&#x03b1;1 expression in the positive control group; (G-I) CBF-&#x03b1;1 expression in the treatment group. CBF-&#x03b1;1 expression in GSPCs was observed on Days 7, 14 and 21. Positive CBF-&#x03b1;1 expression is highlighted in brown (red arrow) following an examination at 200x magnification (n=1).</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16808/d0384b77-7988-4e1b-8326-0ed8d0694c43_figure1.gif"/>
            </fig>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Mean core-binding factor subunit-&#x03b1;1 (CBF-&#x03b1;1) expression on Days 7, 14, 21 in each treatment group (n=6).</title>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16808/d0384b77-7988-4e1b-8326-0ed8d0694c43_figure2.gif"/>
            </fig>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <title>Sox9 expression in gingival stromal progenitor cells (GSPCs) of Wistar rats (
                        <italic toggle="yes">Rattus Novergicus</italic>).</title>
                    <p>(A-C) Sox9 expression in the negative control group; (D-F) Sox9 expression in the positive control group; (G-I) Sox9 expression in the treatment group. Sox9 expression in GSPCs was observed on Days 7, 14 and 21. Positive Sox9 expression is highlighted in brown (red arrow) following examination at 200x magnification (n=1).</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16808/d0384b77-7988-4e1b-8326-0ed8d0694c43_figure3.gif"/>
            </fig>
            <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                <label>Figure 4. </label>
                <caption>
                    <title>Mean Sox9 expression on Days 7, 14, 21 in each treatment group (n=6).</title>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16808/d0384b77-7988-4e1b-8326-0ed8d0694c43_figure4.gif"/>
            </fig>
            <p>The treatment group recorded the highest CBF-&#x03b1;1/Sox9 ratio (16.00&#x00b1;3.000/14.33&#x00b1;2.517/) on Day 7 while the lowest CBF-&#x03b1;1/Sox9 ratio (3.33&#x00b1;1.528/3.67&#x00b1;1.155) was registered by the control negative group on Day 21 (
                <xref ref-type="table" rid="T1">Table 1</xref>). The data obtained was normal with homogeneous distribution (p&gt;0.05). There was significant difference between CBF-&#x03b1;1 and Sox9 expression in each group (p&lt;0.05) (
                <xref ref-type="other" rid="ST1">Supplementary Table 1</xref> and 
                <xref ref-type="other" rid="ST2">Supplementary Table 2</xref>).</p>
            <table-wrap id="T1" orientation="portrait" position="anchor">
                <label>Table 1. </label>
                <caption>
                    <title>CBF-&#x03b1;1/Sox9 expression ratio between groups.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="center" colspan="1" rowspan="1">Day</th>
                            <th align="center" colspan="3" rowspan="1">CBF-&#x03b1;1 expression</th>
                            <th align="center" colspan="3" rowspan="1">Sox9 expression</th>
                            <th align="center" colspan="1" rowspan="1">P-value
                                <xref ref-type="other" rid="fn1">*</xref>
                            </th>
                        </tr>
                        <tr>
                            <th colspan="1" rowspan="1"/>
                            <th align="center" colspan="1" rowspan="1">Negative
                                <break/>control group</th>
                            <th align="center" colspan="1" rowspan="1">Positive
                                <break/>control group</th>
                            <th align="center" colspan="1" rowspan="1">Treatment
                                <break/>group</th>
                            <th align="center" colspan="1" rowspan="1">Negative
                                <break/>control group</th>
                            <th align="center" colspan="1" rowspan="1">Positive
                                <break/>control group</th>
                            <th align="center" colspan="1" rowspan="1">Treatment
                                <break/>group</th>
                            <th colspan="1" rowspan="1"/>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="center" colspan="1" rowspan="1">7</td>
                            <td align="center" colspan="1" rowspan="1">9.00&#x00b1;2.000</td>
                            <td align="center" colspan="1" rowspan="1">11.33&#x00b1;1.528</td>
                            <td align="center" colspan="1" rowspan="1">16.00&#x00b1;3.000</td>
                            <td align="center" colspan="1" rowspan="1">5.67&#x00b1;1.155</td>
                            <td align="center" colspan="1" rowspan="1">11.00&#x00b1;1.00</td>
                            <td align="center" colspan="1" rowspan="1">14.33&#x00b1;2.517</td>
                            <td align="center" colspan="1" rowspan="1">0.00</td>
                        </tr>
                        <tr>
                            <td align="center" colspan="1" rowspan="1">14</td>
                            <td align="center" colspan="1" rowspan="1">7.33&#x00b1;1.528</td>
                            <td align="center" colspan="1" rowspan="1">9.33&#x00b1;0.577</td>
                            <td align="center" colspan="1" rowspan="1">11.67&#x00b1;2.082</td>
                            <td align="center" colspan="1" rowspan="1">2.67&#x00b1;0.577</td>
                            <td align="center" colspan="1" rowspan="1">7.33&#x00b1;1.528</td>
                            <td align="center" colspan="1" rowspan="1">11.33&#x00b1;1.528</td>
                            <td align="center" colspan="1" rowspan="1">0.00</td>
                        </tr>
                        <tr>
                            <td align="center" colspan="1" rowspan="1">21</td>
                            <td align="center" colspan="1" rowspan="1">3.33&#x00b1;1.528</td>
                            <td align="center" colspan="1" rowspan="1">8.33&#x00b1;1.155</td>
                            <td align="center" colspan="1" rowspan="1">10.67&#x00b1;1.528</td>
                            <td align="center" colspan="1" rowspan="1">2.33&#x00b1;1.155</td>
                            <td align="center" colspan="1" rowspan="1">6.00&#x00b1;1.000</td>
                            <td align="center" colspan="1" rowspan="1">9.00&#x00b1;2.000</td>
                            <td align="center" colspan="1" rowspan="1">0.00</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p id="fn1">Results are presented as the mean &#x00b1; standard deviation. *One-way ANOVA, significant at p&lt;0.05.</p>
                        <p>CBF-&#x03b1;1: core-binding factor subunit-&#x03b1;1.</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
            <supplementary-material id="DS0" orientation="portrait" position="float" xlink:href="https://f1000researchdata.s3.amazonaws.com/datasets/15423/57af91d1-1d55-4d34-a853-ae36356820a8_raw_data.xlsx">
                <label>Raw results for CBF-&#x03b1;1 and Sox9 expression for all time points for all treatment groups (N=108; n=6/group)</label>
            </supplementary-material>
            <supplementary-material id="DS1" orientation="portrait" position="float" xlink:href="https://f1000researchdata.s3.amazonaws.com/datasets/15423/a8182365-f066-4f57-953e-e920edc14b7c_Image_data.zip">
                <label>Raw image data</label>
            </supplementary-material>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>GSPCs cultured in PRF expressed CBF-&#x03b1;1 strongly. In this study, the highest CBF-&#x03b1;1 expression was recorded by the treatment group on Day 7, with significant difference between groups. The CBF-&#x03b1;1 expression declined between Day 14 and Day 21. The results of this study were in line with the research by Zou 
                <italic toggle="yes">et al</italic>., which suggested that CBF-&#x03b1;1 expression is used to detect the osteogenic ability of SPCs using yellow fluorescent protein
                <sup>
                    <xref ref-type="bibr" rid="ref-33">33</xref>
                </sup>.</p>
            <p>CBF-&#x03b1;1 is a master key gene transcription factor associated with osteoblast differentiation, which initiates temporally and spatially controlled osteogenesis. Disturbances to CBF-&#x03b1;1 result in obstacles to bone formation because osteoblast differentiation cannot occur. Loss of CBF-&#x03b1;1 expression gene function in the early stages will interfere with osteogenic differentiation and homeostasis in bone development. CBF-&#x03b1;1 is often expressed strongly between Day 7 and Day 14
                <sup>
                    <xref ref-type="bibr" rid="ref-23">23</xref>,
                    <xref ref-type="bibr" rid="ref-25">25</xref>
                </sup>. Osterix and CBF-&#x03b1;1 periodically regulate osteoblast differentiation processes
                <sup>
                    <xref ref-type="bibr" rid="ref-34">34</xref>,
                    <xref ref-type="bibr" rid="ref-35">35</xref>
                </sup>. A study conducted by Loebel 
                <italic toggle="yes">et al</italic>. showed that CBF-&#x03b1;1 expression increased on Day 7, while Duan 
                <italic toggle="yes">et al</italic>.&#x2019;s study demonstrated that CBF-&#x03b1;1 expression increased on Day 12 as detected by RT-PCR
                <sup>
                    <xref ref-type="bibr" rid="ref-19">19</xref>,
                    <xref ref-type="bibr" rid="ref-23">23</xref>
                </sup>. Such findings differed from the results of this study due to the contrasting methods and samples employed, but there were similarities in that CBF-&#x03b1;1 was an early marker of osteogenic differentiation.</p>
            <p>CBF-&#x03b1;1 plays an important role in the early stages of BMSCs differentiation into preosteoblasts. CBF-&#x03b1;1 is generally a preliminary regulator and Osterix is a regulator activator during osteoblast differentiation. Both of these osteoblastogenic coding genes are stimulated and regulated by various signaling pathways, such as the canonical Wnt signaling pathway and bone morphogenetic protein (BMP). Wnt/Cytosolic &#x03b2;-catenin stimulates osteoblastogenesis through the activation of osteogenic transcription factors CBF-&#x03b1;1 and Osterix
                <sup>
                    <xref ref-type="bibr" rid="ref-36">36</xref>
                </sup>. CBF-&#x03b1;1 is known as an important regulatory gene during osteogenic development by enhancing specific osteoblastic differentiation by inducing osteogenic extracellular matrix gene expression during osteoblast maturation, such as collagen-I&#x03b1;, alkaline phosphatase, and osteocalcin
                <sup>
                    <xref ref-type="bibr" rid="ref-33">33</xref>
                </sup>.</p>
            <p>In the present study, the GSPCs cultured in PRF stimulates CBF-&#x03b1;1 expression because PRF is rich in various GFs, such as TGF&#x03b2;-1, PDGF, IGF, VEGF, FGF, EGF, and HGF. PRF promotes migration, proliferation and differentiation of mesenchmymal stem cells as well as neovascularization and collagen synthesis. PRF also promotes, accelerates and improves the quality of soft and bone tissue regeneration
                <sup>
                    <xref ref-type="bibr" rid="ref-23">23</xref>
                </sup>. According to Li 
                <italic toggle="yes">et al</italic>., PRF significantly promotes the induction of mineralization of progenitor cells in alveolar bone, and endogenous stem cells present in the dental tissue that increases exclusively in CBF-&#x03b1;1 expression
                <sup>
                    <xref ref-type="bibr" rid="ref-37">37</xref>,
                    <xref ref-type="bibr" rid="ref-38">38</xref>
                </sup>.</p>
            <p>Interestingly, GSPCs cultured PRF in this study increased Sox9 even in an osteogenic culture medium with significant difference with the control groups. In this study, the highest Sox9 expression occurred in the treatment group on Day 7. The results of this study were supported by those of a study by Sumarta 
                <italic toggle="yes">et al.,</italic> which stated that SPCs cultured in PRF stimulate Sox9 expression
                <sup>
                    <xref ref-type="bibr" rid="ref-22">22</xref>
                </sup>. Sox9 expression showed a positive expression, thereby establishing the role of Sox9 during bone formation. In a knockout Sox9 animal model, osteogenic differentiation was also delayed
                <sup>
                    <xref ref-type="bibr" rid="ref-39">39</xref>
                </sup>. Significantly, recent genetics studies stated that Sox9 in SPCs could eventually differentiate into osteoblasts
                <sup>
                    <xref ref-type="bibr" rid="ref-40">40</xref>
                </sup>. Therefore, the inhibitory effect of Sox9 on osteoblastic and chondrocyte maturation via repression of CBF-alpha1 function is an essential mechanism for osteo-chondroprogenitor cell fate determination
                <sup>
                    <xref ref-type="bibr" rid="ref-41">41</xref>
                </sup>.</p>
            <p>In this study, GSPCs-cultured PRF regulated and stimulated both CBF-&#x03b1;1/Sox9 expression ratio on Day 7 with significant difference between groups. The interaction and cooperation between CBF-&#x03b1;1/Sox9 is a mandatory master transcription gene for cartilage and bone development
                <sup>
                    <xref ref-type="bibr" rid="ref-18">18</xref>
                </sup>. As Sox9 inhibited and downregulated CBF-&#x03b1;1 on Day 7, it may be even more sensitive to predict osteogenic differentiation ability of SPCs. Furthermore, while Sox9 expression was downregulated, osteogenic differentiation ability was stimulated during early osteogenic differentiation 
                <italic toggle="yes">in vitro</italic>. Nevertheless, CBF-&#x03b1;1/Sox9 expression ratio on Day 7 could be used to predict the osteogenic differentiation ability of GMSCs, suggesting a balance between CBF-&#x03b1;1/Sox9 in the earlier regulatory bone formation and regeneration
                <sup>
                    <xref ref-type="bibr" rid="ref-19">19</xref>,
                    <xref ref-type="bibr" rid="ref-41">41</xref>
                </sup>.</p>
        </sec>
        <sec sec-type="conclusions">
            <title>Conclusion</title>
            <p>GSPCs cultured in PRF increased CBF-&#x03b1;1/Sox9 expression on Day 7. GSPCs cultured in PRF possessed potential osteogenic differentiation ability as predicted by the CBF-&#x03b1;1/sox9 expression ratio. CBF-&#x03b1;1/Sox9 expression constitutes a promising future 
                <italic toggle="yes">in vitro</italic> screening method employed to detect the earliest osteogenic differentiation of SPCs. Further study is required to analyze any association with CBF-&#x03b1;1/Sox9 expression ratio 
                <italic toggle="yes">in vivo.</italic>
</p>
        </sec>
        <sec>
            <title>Data availability</title>
            <p>The data referenced by this article are under copyright with the following copyright statement: Copyright: &#x00ef;&#x00bf;&#x00bd; 2018 Nugraha AP et al.</p>
            <p>Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
                <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/"/>
            </p>
            <p>Dataset 1: Raw results for CBF-&#x03b1;1 and Sox9 expression for all time points for all treatment groups (N=108; n=6/group). DOI, 
                <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.5256/f1000research.15423.d210638">10.5256/f1000research.15423.d210638</ext-link>
                <sup>
                    <xref ref-type="bibr" rid="ref-42">42</xref>
                </sup>
            </p>
            <p>Dataset 2: Raw image data. DOI, 
                <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.5256/f1000research.15423.d210639">10.5256/f1000research.15423.d210639</ext-link>
                <sup>
                    <xref ref-type="bibr" rid="ref-43">43</xref>
                </sup>
            </p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments</title>
            <p>The authors would like to thank the Postgraduate School, Department of Dental Medicine, Faculty of Medicine, Stem Cell Research and Development Centre, Universitas Airlangga for its support of the research reported here.</p>
        </ack>
        <sec id="SM1" sec-type="supplementary-material">
            <title>Supplementary material</title>
            <p id="ST1">Supplementary Table 1. Tukey HSD multiple comparison between groups of CBF-&#x03b1;1.</p>
            <p>
                <ext-link ext-link-type="uri" xlink:href="https://f1000researchdata.s3.amazonaws.com/supplementary/15423/62700dc4-244b-4201-ad46-db4f3c3836f8.docx">Click here to access the data</ext-link>.</p>
            <p id="ST2">Supplementary Table 2. Tukey HSD multiple comparison between groups of Sox9 expression.</p>
            <p>
                <ext-link ext-link-type="uri" xlink:href="https://f1000researchdata.s3.amazonaws.com/supplementary/15423/2501cf1f-74ef-44f1-91c8-120a7abd6cd0.docx">Click here to access the data</ext-link>.</p>
            <p id="SF1">Supplementary File 1: Estimation resume of CBF-&#x03b1;1 expression.</p>
            <p>
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            <title-group>
                <article-title>Reviewer response for version 1</article-title>
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                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
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                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport36777" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15423.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>First of all, please allow me to congratulate the authors for attempting to undertake this project which I found very interesting and of valuable additional knowledge. The manuscript itself is well-written and well-structured and I have to also commend the authors for this matter. However, I may require some clarifications on the following issues: 
                <list list-type="order">
                    <list-item>
                        <p>&#x00a0;What would be the arguments of dividing into the 3 groups as well as&#x00a0;using such media treatment for each group (GSPC, + and - groups). This would be beneficial for readers to replicate in future use.</p>
                    </list-item>
                    <list-item>
                        <p>What would be the reason for determining &#x00a0;the evaluation of osteogenic differentiation on Day 7, 14 and 21 cell groups? At the end of that sentence, there was a quote of another work. However, I think it would make this manuscript even clearer if this could be briefly mentioned.</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report36776">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.16808.r36776</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Alhasyimi</surname>
                        <given-names>Ananto Ali</given-names>
                    </name>
                    <xref ref-type="aff" rid="r36776a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-1402-4543</uri>
                </contrib>
                <aff id="r36776a1">
                    <label>1</label>Department of Orthodontics,&#x00a0;Faculty of Dentistry, Gadjah Mada University (UGM), Yogyakarta, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>15</day>
                <month>8</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Alhasyimi AA</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport36776" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15423.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The authors of this study have investigated the role of &#x00a0;GSPCs cultured in PRF in increasing the CBF-&#x03b1;1/Sox9 expression ratio during osteogenic differentiation. Based on the study results, the authors have concluded that the GSPCs cultured in PRF increased CBF-&#x03b1;1/Sox9 expression on Day 7. The results are certainly interesting and the authors are commended for executing this study.&#x00a0;</p>
            <p> However, the authors need to address the following minor concerns:&#x00a0;</p>
            <p> 
                <bold>
                    <underline>General</underline>
                </bold>: 
                <list list-type="order">
                    <list-item>
                        <p>Paper is well organized and easy to follow.</p>
                    </list-item>
                    <list-item>
                        <p>Novelty is sufficient and high impact.</p>
                    </list-item>
                    <list-item>
                        <p>To improve the readability, It is recommended that the text is checked by a native English speaking person as many of the sentences might be misunderstood.&#x00a0;I suggest a revision of the English grammar structures by an expert editor in revising manuscripts.</p>
                    </list-item>
                </list> 
                <bold>
                    <underline>Introduction</underline>
                </bold>: 
                <list list-type="order">
                    <list-item>
                        <p>The authors have mentioned &#x201c;Furthermore, a second objective was &#x2026;&#x201d;, however, I didn&#x2019;t find the first objective. Please change this section</p>
                    </list-item>
                    <list-item>
                        <p>The Introduction section is too long, you can try to simplify this section (please move some of the key mechanism of the materials in enhancing CBF-&#x03b1;1/Sox9 expression in the discussion part</p>
                    </list-item>
                </list> &#x00a0;</p>
            <p> 
                <bold>
                    <underline>Results:</underline>
                </bold> 
                <list list-type="order">
                    <list-item>
                        <p>Please provide and add some information about standard deviation of the data in the diagrams.</p>
                    </list-item>
                    <list-item>
                        <p>Please indicate whether the difference is significant or not in your graph/ diagrams as well, using some symbols (asteric).</p>
                    </list-item>
                </list> </p>
            <p> 
                <bold>
                    <underline>Discussion</underline>
                </bold>: 
                <list list-type="order">
                    <list-item>
                        <p>Discussion of the results is quite comprehensive. In analyzing the results, the authors also show citations from the previous study to support the explanation of these results.</p>
                    </list-item>
                    <list-item>
                        <p>The answer to the hypothesis of this study should be included at the beginning of the discussion section.</p>
                    </list-item>
                    <list-item>
                        <p>Please mention the limitation of this study in the discussion section for</p>
                    </list-item>
                </list> &#x00a0;</p>
            <p> 
                <bold>
                    <underline>References</underline>
                </bold>:</p>
            <p> The supporting references are too long for the medium article</p>
            <p> </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Biological tooth movement</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report36488">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.16808.r36488</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Hong</surname>
                        <given-names>Guang</given-names>
                    </name>
                    <xref ref-type="aff" rid="r36488a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r36488a1">
                    <label>1</label>Liaison Center for Innovative Dentistry, Graduate School of Dentistry, Tohoku University, Sendai, Japan</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>13</day>
                <month>8</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Hong G</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport36488" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15423.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This paper needs major revision. I would make the following comments.</p>
            <p> 
                <bold>Introduction</bold>
                <bold>:</bold>
            </p>
            <p> 1. In final part, you said &#x201c;Furthermore, a second objective was &#x2026;&#x201d;, however I cannot find your first objective. What is the first objective of your study?</p>
            <p> &#x00a0;I think you should change this part to &#x201c;The objective of this study was to analyze GSPCs cultured in PRF osteogenic differentiation predicted by CBF-&#x03b1;1/Sox9 expression ratio. The hypothesis of the current study is that GSPCs cultured in PRF can increase the CBF-&#x03b1;1/Sox9 expression ratio during osteogenic differentiation.&#x201d;&#x00a0;</p>
            <p> </p>
            <p> 2. The reason that why you do this research in necessary in Introduction section. And also please add the that is the problem of current and past research regarding relationship of osteogenic and CBF-&#x03b1;1/Sox9 ratio?&#x00a0;</p>
            <p> </p>
            <p> </p>
            <p> 
                <bold>Methods:</bold>
            </p>
            <p> </p>
            <p> 3. The materials section is too long, you can try to simplify this section.&#x00a0;</p>
            <p> </p>
            <p> </p>
            <p> 
                <bold>Discussion</bold>
                <bold>:</bold>
            </p>
            <p> </p>
            <p> 4. The answer of hypothesis of this study should be included in the discussion section.&#x00a0;</p>
            <p> </p>
            <p> 5. The discussion about the experiment method and selection of material is necessary.&#x00a0;There was no discussion why expression differences existed. The authors need to discuss based upon the mechanism otherwise the paper is going to be a laboratory report.&#x00a0;&#x00a0;</p>
            <p> </p>
            <p> 6. Please add the clinical implications of your study and clinical significance of the findings in discussion section.&#x00a0;</p>
            <p> </p>
            <p> 7. What is the limitation of this study? You should indicate at this section.&#x00a0;</p>
            <p> 
                <bold>Figure</bold>
                <bold>:</bold>
            </p>
            <p> </p>
            <p> 8. Fig. 1 and Fig. 3: Please indicate which pic is A, B, C&#x2026;&#x2026;. and H, I.&#x00a0;</p>
            <p> 9. Fig. 2 and Fig. 4: Please add the SD (standard deviation) to your bar graph. And if possible also add the results of statistical analysis to your graph.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
</article>
