<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.15088.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Prevalence of aerobic pathogenic bacteria isolated from patients with burn infection and their antimicrobial susceptibility patterns in Al-Najaf City, Iraq- a three-year cross-sectional study.</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Aljanaby</surname>
                        <given-names>Ahmed Abduljabbar Jaloob</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9817-3318</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Aljanaby</surname>
                        <given-names>Israa Abduljabbar Jaloob</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Biology, Faculty of Science, University of Kufa, Najaf, Iraq</aff>
                <aff id="a2">
                    <label>2</label>Faculty of Pharmacy, University of Kufa, Najaf, Iraq</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:ahmedaj.aljanabi@uokufa.edu.iq">ahmedaj.aljanabi@uokufa.edu.iq</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>30</day>
                <month>7</month>
                <year>2018</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2018</year>
            </pub-date>
            <volume>7</volume>
            <elocation-id>1157</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>18</day>
                    <month>7</month>
                    <year>2018</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Aljanaby AAJ and Aljanaby IAJ</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
                <license>
                    <license-p>The author(s) is/are employees of the US Government and therefore domestic copyright protection in USA does not apply to this work. The work may be protected under the copyright laws of other jurisdictions when used in those jurisdictions.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/7-1157/pdf"/>
            <abstract>
                <p>
					
                    <bold>Background:</bold> Burn infections are one of the most common serious illnesses caused by pathogens, mainly by both gram-negative and gram-positive bacteria. The aim of this study was to detect of the prevalence of multi-drug resistant and extended-spectrum &#x03b2;-lactamase-producing (ESBL) bacteria isolated from inpatients with burn infection and the antimicrobials sensitivity patterns of all bacterial isolates during three years.</p>
                <p>
					
                    <bold>Methods:</bold> This cross-sectional study was performed in Al-Najaf Central Hospital in Al-Najaf City, Iraq from January 2015 to December 2017. A total of 295 burns swabs were collected from hospitalized patients with burn infection. All grown bacterial isolates were identified by standardized microbiological tests. Antimicrobials susceptibility testing was done using the disc diffusion method.</p>
                <p>
					
                    <bold>Results:</bold> Of the 295 burn swabs, 513 different bacteria strains were isolated. 
                    <italic toggle="yes">Pseudomonas aeruginosa</italic> was the most common bacteria with 142 isolates (27.6%), while 
                    <italic toggle="yes">Staphylococcus typhi</italic> was the least common bacteria with only 17 isolates (3.3%). Most bacterial isolates were resistant to most antimicrobials with high percentages.</p>
                <p>
					
                    <bold>Conclusions:</bold> There was a high prevalence of multi-drug resistant bacteria in burn infection in Al-Najaf hospital. 
                    <italic toggle="yes">Pseudomonas aeruginosa</italic> was the most common multi-drug resistant bacteria, and the most common of ESBL bacteria causing burn infection over the three years.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Burn infection</kwd>
                <kwd>Pathogenic bacteria</kwd>
                <kwd>Antimicrobials susceptibility patterns</kwd>
                <kwd>ESBL.</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>Burn infection caused by pathogenic bacteria is one of the most common hospital problems worldwide, particularly in developing countries
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>
                </sup>. Fire leads to skin destruction and simultaneous suppression of both humoral and cellular immune system subsequently resulting burn infection
                <sup>
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. Complications of burn infection are responsible for more than 70% of death cases among inpatients with burns
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. These infections mainly caused by multi-drug resistant gram-negative and gram-positive bacteria such as 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> (
                <italic toggle="yes">P. aeruginosa</italic>), 
                <italic toggle="yes">Klebsiella pneumoniae</italic> (
                <italic toggle="yes">K.pneumoniae</italic>) and 
                <italic toggle="yes">Staphylococcus aureus</italic> (
                <italic toggle="yes">S.aureus</italic>)
                <sup>
                    <xref ref-type="bibr" rid="ref-4">4</xref>,
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. Non-sterile burns halls and duration of patients stay in hospital in addition to the surface area of burned skin, are the most important factors related to the increase of persistent and multiplication of pathogenic bacteria in the burned areas
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>,
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. Multi-drug resistant (MDR) bacteria is one of the most common pathogens causing burn infection in hospitalized patients worldwide
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>,
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. These pathogens are resisting to at least three different classes of antimicrobials such as, penicillin&#x2019;s, beta-lactams, cephems, 3rd and 4th generation cephalosporins, aminoglycosides, tetracyclines and quinolones, and is becoming one of the most dangerous health issues in hospitals
                <sup>
                    <xref ref-type="bibr" rid="ref-10">10</xref>
                </sup>. In addition, extended-spectrum &#x03b2;-lactamase (ESBL)-producing bacteria are considered as a potent pathogens due to it their resistance to a wide range of antimicrobials like, cefotaxime, ceftriaxone and ceftazidime, that lead to difficulty in the treatment of most infections such as burn infection and urinary tract infection
                <sup>
                    <xref ref-type="bibr" rid="ref-11">11</xref>,
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>. Burn infection is characterized by difficult healing due to administration of unsuitable treatment, long stays in hospital and the contaminates of hospital environments lead to the emergence of new multi-drug resistant bacterial isolates causing dangerous complications such as, bacteremia, septicemia and death
                <sup>
                    <xref ref-type="bibr" rid="ref-13">13</xref>,
                    <xref ref-type="bibr" rid="ref-14">14</xref>
                </sup>. Therefore, we must pay attention to all safety standards in hospitals, especially in burns wards through sterilization, performing antimicrobial susceptibility test on all pathogenic bacteria isolated from burn infections, and keeping the burned skin in sterile conditions to prevent the emergence of these pathogens. According to the above, the aim of this work was to investigate of the prevalence of multi-drug resistant bacteria and extended-spectrum &#x03b2;-lactamase-producing bacteria isolated from inpatients with burn infection in Al-Najaf central hospital in Al-Najaf City, Iraq over three years, from January 2015 to December 2017 to increase our understanding of the most prominent bacteria and their resistance to different antimicrobials to prevent the emergence of these isolates in the future.</p>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <sec>
                <title>Ethical considerations</title>
                <p>We confirm that we received approval for this study including: patient&#x2019;s swabs and consent from the participants. All swabs were taken by physician and consent by the hospital treatment and care team responsible and then handed the samples over to us. All swabs were provided from the participants physician in Al-Najaf central hospital in Al-Najaf City, (Burns Department). All swabs were immediately transported to the Laboratory of Microbiology in Faculty of Science, University of Kufa to process. Note: Each swab was labeled with the following items: age, sex, duration of stay in the hospital after burning. Al Najaf Central Hospital is part of the University of Kufa and therefore written approval was not sought as there is a pre-existing agreement between the university and hospital regarding clinical sample collection sample collection. Oral consent to take swabs was taken from each patient.</p>
            </sec>
            <sec>
                <title>Eligibility criteria for patients</title>
                <p>Patients will be considered eligible for registration into this study if they fulfill all the inclusion criteria and none of the exclusion criteria as defined below.</p>
                <p>1- Patients (Male or female) at least more than 18 years old.</p>
                <p>2- Patients should have sufficient capacity for informed consent.</p>
                <p>3- Patients should don&#x2019;t have any other infections.</p>
            </sec>
            <sec>
                <title>Study design, burns swabs collection and bacterial identification</title>
                <p>This is a cross-sectional descriptive study performed in Al-Najaf central hospital in Al-Najaf City, Iraq, from January 2015 to December 2017. A total of 295 swabs (emulsion with normal saline) were collected from the burned area of hospitalized patient with burn infections (2nd degree, shown the signs of infection during the change of dressings), ages ranges 18-45 years old (males and females), 3 swabs were taken from each patient at 5, 10 and 15 days of stay. Immediately, all collected swabs were incubated with brain heart infusion broth (Oxoid&#x2122;, USA, CM1135R) for 24h at 37&#x00b0;C to encourage bacterial growth and then streaked onto blood agar (Oxoid&#x2122;, USA, CM0055B) using a swab (Himedia, India, PW1210G) and chocolate agar (Oxoid&#x2122;, USA, R01293) surface and incubated aerobically at 37&#x00b0;C for 24-48 h. All emerged bacterial isolates were identified according to colony morphology and standard microbiological tests such as; colony morphology, blood hemolysis onto blood agar surface (Oxoid&#x2122;, USA, CM0055B), gram stain, oxidase test, catalase test, imvic test, motility test, coagulase test, growth on MacConkey agar (Oxoid&#x2122;, USA, R061322) and Mannitol salt agar (Oxoid&#x2122;, USA, CM0085B)
                    <sup>
                        <xref ref-type="bibr" rid="ref-15">15</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Antimicrobials susceptibility test</title>
                <p>Antimicrobials susceptibility testing was performed by disc diffusion method according to Kirby-Bauer method onto Mueller Hinton agar (Oxoid&#x2122;, USA, PO5007A) surface
                    <sup>
                        <xref ref-type="bibr" rid="ref-16">16</xref>
                    </sup>. Fourteen different antimicrobial discs were used in this study provide from OxoidTM, USA as follow: penicillin 10IU (P) (CT0043B), amoxicillin 25&#x00b5;g (AX) (CT0161B), Amoxiclav 30&#x00b5;g (AMC) (CT0538B), ceftriaxone 30&#x00b5;g (CRO) (CT0417B), cefotaxime 30&#x00b5;g (CTX) (CT0166B), ceftazidime 30&#x00b5;g (CAZ) (CT0412B), gentamicin 10&#x00b5;g (GM) (CT0024B), tobramycin 10&#x00b5;g (TM) (CT0056B), amikacin 30&#x00b5;g (NA) (CT0107B), ciprofloxacin 5&#x00b5;g (CIP) (CT0425B), imipenem 10&#x00b5;g (IMP) (CT0455B), Streptomycin 10&#x00b5;g (S) (CT0047B), erythromycin 30&#x00b5;g (E) (CT0021B), tetracycline 30 &#x00b5;g (TE) (CT0054B). The diameters of inhibition zones (mm) were measured using a caliper measure each zone with the unaided eye, and compared with clinical and laboratory standards institute (CLSI) guideline 2017
                    <sup>
                        <xref ref-type="bibr" rid="ref-17">17</xref>
                    </sup>. Any bacterial isolate was resistance to at least three different antimicrobials classes considered as MDR, if any bacterial isolate was resistance to all antimicrobial classes except two or three antimicrobial classes considered as extensive-drug resistant (XDR) and when any bacterial isolate was resistance to all antimicrobials class considered as pan-drug resistant (PDR)
                    <sup>
                        <xref ref-type="bibr" rid="ref-17">17</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Identification of methicillin resistance 
                    <italic toggle="yes">S.aureus</italic>
				</title>
                <p>All 
                    <italic toggle="yes">S.aureus</italic> isolates growth was adjusted according to turbidity of standard McFarland tube 0.5 (measured by Vis-Nir spectrophotometer, Biobase, UK, bk-S410). All isolates were streaked onto Mueller Hinton agar (Oxoid&#x2122;, USA, PO5007A) surface supplemented with 4% NaCl. Five &#x00b5;g of methicillin disc (Oxoid&#x2122;, USA, CT0159B) was placed at the surface of Mueller Hinton agar and incubated aerobically at 37&#x00b0;C for 24h. All 
                    <italic toggle="yes">S. aureus</italic> isolates that were resistant to methicillin with diameter of inhibition zone &lt; 17 mm were considered as methicillin resistant 
                    <italic toggle="yes">S.aureus</italic> (MRSA), while those isolates with diameters of inhibition zone &#x2265; 17 mm considered methicillin sensitive 
                    <italic toggle="yes">S.aureus</italic> (MSSA)
                    <sup>
                        <xref ref-type="bibr" rid="ref-18">18</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Phenotypic detection of extended spectrum beta-lactamase-producing bacteria</title>
                <p>This test was performed according to modified double disc synergy test (MDDST)
                    <sup>
                        <xref ref-type="bibr" rid="ref-19">19</xref>
                    </sup> as follows: all bacterial isolates (turbidity was adjusted according to McFarland tube 0.5) were streaked by sterile swab (Himedia, India) onto Mueller Hinton agar (OxoidTM, USA) surface, AMC disc 30&#x00b5;g was placed in the center of agar plate, CRO 30&#x00b5;g, CTX 30&#x00b5;g and CAZ 30&#x00b5;g were placed around AMC disc 30&#x00b5;g (15 mm from center to center). All plates were incubated aerobically at 37 &#x00b0;C for 24h. Any increase in the inhibition zone towards AMC disc 30&#x00b5;g was considered as positive for the extended spectrum beta-lactamase.</p>
            </sec>
            <sec>
                <title>Statistical analysis</title>
                <p>Percentages were used in this study to compare between the prevalence of pathogenic bacteria and their resistant to antimicrobials using 
                    <ext-link ext-link-type="uri" xlink:href="https://www.graphpad.com/">Graphpad-prism</ext-link> V.10 computer software.</p>
            </sec>
        </sec>
        <sec sec-type="results">
            <title>Results</title>
            <p>Of the 295 burn swabs, 513 different bacterial strains were isolated, 335 isolates (65.3%) were gram negative bacteria and 178 isolates (34.7%) were gram positive bacteria (
                <xref ref-type="fig" rid="f1">Figure 1</xref>). 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> was one of the most common bacteria causing burn infection, 142 isolates (27.6%), followed by methicillin resistant 
                <italic toggle="yes">S.aureus</italic> 106 isolates (20.6%), 
                <italic toggle="yes">K. pneumoniae</italic> 93 isolates (18.2%), methicillin sensitive 
                <italic toggle="yes">S.aureus</italic> 72 isolates (14.1%), 
                <italic toggle="yes">E.coli</italic> 51 isolates (10%), 
                <italic toggle="yes">A.baumannii</italic> 32 isolates (6.2%) and 
                <italic toggle="yes">S.typhi</italic> 17 isolates (3.3%). 323 different bacterial strains (63%) were isolated from patients with burn infection who stayed in hospital for 15 days (
                <xref ref-type="table" rid="T1">Table 1</xref>). Out of total 513 bacterial isolates, 122 (23.8%) were isolated as single growth, while 391(76.2%) were isolated as mixed growth (
                <xref ref-type="table" rid="T2">Table 2</xref>). According to the results of antimicrobial susceptibility tests, most bacterial isolates were resistant to most antimicrobials with high percentages. Out of the 513 bacterial isolates, only 33 isolates (6.40%) were resistant to imipenem 10&#x00b5;g. The results of antimicrobials susceptibility test and overall resistant of 513 bacterial strains to 14 antimicrobials are shown in 
                <xref ref-type="table" rid="T3">Table 3</xref> and 
                <xref ref-type="fig" rid="f2">Figure 2</xref>. Of the total 513 bacterial isolates, 464 isolates (90.4%) were MDR, 20 isolates (14%) were XDR and 17 isolates (3.3%) were PDR (
                <xref ref-type="table" rid="T4">Table 4</xref>). 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> was the most common MDR-bacteria, 130 strains (91.5%), while 4 strains (2.8%) were XDR and 8 strains (5.6%) were PDR. All resistant types of all bacterial isolates are shown in 
                <xref ref-type="table" rid="T4">Table 4</xref>. According to MDDST, 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> was the most common ESBL-producing bacteria 51 isolates (35.9%) (
                <xref ref-type="fig" rid="f3">Figure 3</xref>) followed by 
                <italic toggle="yes">K.pneumoniae</italic> 21 isolates (2.6%), while, no strain of 
                <italic toggle="yes">S.typhi</italic> was ESBL. All ESBL- producing gram negative bacteria are shown in 
                <xref ref-type="fig" rid="f4">Figure 4</xref>. </p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Numbers and percentages of total bacterial isolates from hospitalized patients with burn infection during January 2015 to December 2017.</title>
                    <p>N=513.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16432/b880d4af-6aa9-41ad-abb9-9cd3a65f0f2a_figure1.gif"/>
            </fig>
            <table-wrap id="T1" orientation="portrait" position="anchor">
                <label>Table 1. </label>
                <caption>
                    <title>Numbers and percentages of pathogenic bacteria isolated from hospitalized patients with burn infection during January 2015 to December 2017.</title>
                    <p>N=513.</p>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="center" colspan="1" rowspan="3">Pathogenic
                                <break/>bacteria</th>
                            <th align="center" colspan="3" rowspan="1" valign="top">Duration of stay in hospital</th>
                            <th align="center" colspan="1" rowspan="3" valign="middle">Total No. (%)</th>
                        </tr>
                        <tr>
                            <th align="center" colspan="1" rowspan="1">5 days</th>
                            <th align="center" colspan="1" rowspan="1">10 days</th>
                            <th align="center" colspan="1" rowspan="1">15 days</th>
                        </tr>
                        <tr>
                            <th align="center" colspan="1" rowspan="1">No. (%)</th>
                            <th align="center" colspan="1" rowspan="1">No. (%)</th>
                            <th align="center" colspan="1" rowspan="1">No. (%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
                                <italic toggle="yes">P. aeruginosa</italic>
                            </td>
                            <td align="center" colspan="1" rowspan="1">24</td>
                            <td align="center" colspan="1" rowspan="1">33</td>
                            <td align="center" colspan="1" rowspan="1">85</td>
                            <td align="center" colspan="1" rowspan="1">142(27.6)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">MRSA</td>
                            <td align="center" colspan="1" rowspan="1">10</td>
                            <td align="center" colspan="1" rowspan="1">30</td>
                            <td align="center" colspan="1" rowspan="1">66</td>
                            <td align="center" colspan="1" rowspan="1">106(20.6)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">K. pneumoniae</italic>
								</td>
                            <td align="center" colspan="1" rowspan="1">18</td>
                            <td align="center" colspan="1" rowspan="1">30</td>
                            <td align="center" colspan="1" rowspan="1">45</td>
                            <td align="center" colspan="1" rowspan="1">93(18.2)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">MSSA</td>
                            <td align="center" colspan="1" rowspan="1">10</td>
                            <td align="center" colspan="1" rowspan="1">12</td>
                            <td align="center" colspan="1" rowspan="1">50</td>
                            <td align="center" colspan="1" rowspan="1">72(14.1)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">E. coli</italic>
								</td>
                            <td align="center" colspan="1" rowspan="1">1</td>
                            <td align="center" colspan="1" rowspan="1">10</td>
                            <td align="center" colspan="1" rowspan="1">40</td>
                            <td align="center" colspan="1" rowspan="1">51(10)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">A.baumannii</italic>
								</td>
                            <td align="center" colspan="1" rowspan="1">2</td>
                            <td align="center" colspan="1" rowspan="1">8</td>
                            <td align="center" colspan="1" rowspan="1">22</td>
                            <td align="center" colspan="1" rowspan="1">32(6.2)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">S.typhi</italic>
								</td>
                            <td align="center" colspan="1" rowspan="1">0</td>
                            <td align="center" colspan="1" rowspan="1">2</td>
                            <td align="center" colspan="1" rowspan="1">15</td>
                            <td align="center" colspan="1" rowspan="1">17(3.3)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">Total</td>
                            <td align="center" colspan="1" rowspan="1">65(12.6)</td>
                            <td align="center" colspan="1" rowspan="1">125(24.4)</td>
                            <td align="center" colspan="1" rowspan="1">323(63)</td>
                            <td align="center" colspan="1" rowspan="1">513(100)</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p>Data were presented as numbers (NO.) and percentages (%) of bacterial isolates. MRSA: Methicillin resistance 
                            <italic toggle="yes">S.aureus</italic>, MSSA: Methicillin sensitive 
                            <italic toggle="yes">S.aureus</italic>.</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
            <table-wrap id="T2" orientation="portrait" position="anchor">
                <label>Table 2. </label>
                <caption>
                    <title>Numbers and percentages of pathogenic bacteria isolated from hospitalized patients with burn infection according to type of bacterial isolates and duration of stay in hospital during January 2015 to December 2017.</title>
                    <p>N=513.</p>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="center" colspan="1" rowspan="2">Type of bacterial
                                <break/>isolates</th>
                            <th align="center" colspan="3" rowspan="1">Duration of stay in hospital</th>
                            <th align="center" colspan="1" rowspan="2">Total
                                <break/>No. (%)</th>
                        </tr>
                        <tr>
                            <th align="center" colspan="1" rowspan="1">5 days No. (%)</th>
                            <th align="center" colspan="1" rowspan="1">10 days No. (%)</th>
                            <th align="center" colspan="1" rowspan="1">15 days No. (%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">Single isolate</td>
                            <td align="center" colspan="1" rowspan="1">10(1.9)</td>
                            <td align="center" colspan="1" rowspan="1">27(5.3)</td>
                            <td align="center" colspan="1" rowspan="1">85(16.7)</td>
                            <td align="center" colspan="1" rowspan="1">122(23.8)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">Mixed isolates</td>
                            <td align="center" colspan="1" rowspan="1">55(10.7)</td>
                            <td align="center" colspan="1" rowspan="1">98(19.1)</td>
                            <td align="center" colspan="1" rowspan="1">238(46.3)</td>
                            <td align="center" colspan="1" rowspan="1">391(76.2)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">Total</td>
                            <td align="center" colspan="1" rowspan="1">65(12.6)</td>
                            <td align="center" colspan="1" rowspan="1">125(24.4)</td>
                            <td align="center" colspan="1" rowspan="1">323(63)</td>
                            <td align="center" colspan="1" rowspan="1">513(100)</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p>Data were presented as numbers (No.) and percentages (%) of bacterial isolates.</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
            <table-wrap id="T3" orientation="portrait" position="anchor">
                <label>Table 3. </label>
                <caption>
                    <title>Numbers and percentages of pathogenic bacteria isolated from hospitalized patients with burn infection during January 2015 to December 2017 that were resistant to 14 antimicrobials.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1" valign="top">AB.</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">P. aeruginosa</italic> 142
                                <break/>No. (100%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">MRSA 106
                                <break/>No. (100%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">K. pneumoniae</italic> 93
                                <break/>No. (100%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">MSSA 72
                                <break/>No. (100%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">E. coli</italic> 51
                                <break/>No. (100%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">A.baumannii</italic> 32
                                <break/>No. (100%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">
                                <italic toggle="yes">S.typhi</italic> 17
                                <break/>No. (100%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P</td>
                            <td align="center" colspan="1" rowspan="1">142(100)</td>
                            <td align="center" colspan="1" rowspan="1">106(100)</td>
                            <td align="center" colspan="1" rowspan="1">93(100)</td>
                            <td align="center" colspan="1" rowspan="1">70(97.2)</td>
                            <td align="center" colspan="1" rowspan="1">45(88.2)</td>
                            <td align="center" colspan="1" rowspan="1">30(93.7)</td>
                            <td align="center" colspan="1" rowspan="1">12(70.5)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">AX</td>
                            <td align="center" colspan="1" rowspan="1">142(100)</td>
                            <td align="center" colspan="1" rowspan="1">106(100)</td>
                            <td align="center" colspan="1" rowspan="1">85(91.3)</td>
                            <td align="center" colspan="1" rowspan="1">66(91.6)</td>
                            <td align="center" colspan="1" rowspan="1">40(78.4)</td>
                            <td align="center" colspan="1" rowspan="1">29(90.6)</td>
                            <td align="center" colspan="1" rowspan="1">13(76.4)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">AMC</td>
                            <td align="center" colspan="1" rowspan="1">140(98.5)</td>
                            <td align="center" colspan="1" rowspan="1">99(93.3)</td>
                            <td align="center" colspan="1" rowspan="1">80(86)</td>
                            <td align="center" colspan="1" rowspan="1">65(90.2)</td>
                            <td align="center" colspan="1" rowspan="1">39(76.4)</td>
                            <td align="center" colspan="1" rowspan="1">28(87.5)</td>
                            <td align="center" colspan="1" rowspan="1">10(58.8)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">CRO</td>
                            <td align="center" colspan="1" rowspan="1">130 (91.5)</td>
                            <td align="center" colspan="1" rowspan="1">90(84.9)</td>
                            <td align="center" colspan="1" rowspan="1">80(86)</td>
                            <td align="center" colspan="1" rowspan="1">33(45.8)</td>
                            <td align="center" colspan="1" rowspan="1">35(68.6)</td>
                            <td align="center" colspan="1" rowspan="1">28(87.5)</td>
                            <td align="center" colspan="1" rowspan="1">11(64.7)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">CTX</td>
                            <td align="center" colspan="1" rowspan="1">128(90.1)</td>
                            <td align="center" colspan="1" rowspan="1">96(90.5)</td>
                            <td align="center" colspan="1" rowspan="1">81(87)</td>
                            <td align="center" colspan="1" rowspan="1">36(50)</td>
                            <td align="center" colspan="1" rowspan="1">38(74.5)</td>
                            <td align="center" colspan="1" rowspan="1">27(84.3)</td>
                            <td align="center" colspan="1" rowspan="1">11(64.7)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">CAZ</td>
                            <td align="center" colspan="1" rowspan="1">132(92.5)</td>
                            <td align="center" colspan="1" rowspan="1">100(94.3)</td>
                            <td align="center" colspan="1" rowspan="1">86(92.4)</td>
                            <td align="center" colspan="1" rowspan="1">39(54.1)</td>
                            <td align="center" colspan="1" rowspan="1">39(76.4)</td>
                            <td align="center" colspan="1" rowspan="1">30(93.7)</td>
                            <td align="center" colspan="1" rowspan="1">10(58.8)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">GM</td>
                            <td align="center" colspan="1" rowspan="1">102(71.8)</td>
                            <td align="center" colspan="1" rowspan="1">80(75.4)</td>
                            <td align="center" colspan="1" rowspan="1">75(80.6)</td>
                            <td align="center" colspan="1" rowspan="1">35(48.6)</td>
                            <td align="center" colspan="1" rowspan="1">40(78.4)</td>
                            <td align="center" colspan="1" rowspan="1">18(65.2)</td>
                            <td align="center" colspan="1" rowspan="1">8(47)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">TM</td>
                            <td align="center" colspan="1" rowspan="1">112(78.8)</td>
                            <td align="center" colspan="1" rowspan="1">75(70.7)</td>
                            <td align="center" colspan="1" rowspan="1">74(79.5)</td>
                            <td align="center" colspan="1" rowspan="1">40(55.5)</td>
                            <td align="center" colspan="1" rowspan="1">25(49)</td>
                            <td align="center" colspan="1" rowspan="1">19(59.3)</td>
                            <td align="center" colspan="1" rowspan="1">7(41.1)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">NA</td>
                            <td align="center" colspan="1" rowspan="1">110(77.4)</td>
                            <td align="center" colspan="1" rowspan="1">81(76.4)</td>
                            <td align="center" colspan="1" rowspan="1">40(43)</td>
                            <td align="center" colspan="1" rowspan="1">42(58.3)</td>
                            <td align="center" colspan="1" rowspan="1">20(39.2)</td>
                            <td align="center" colspan="1" rowspan="1">15(46.8)</td>
                            <td align="center" colspan="1" rowspan="1">7(41.1)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">CIP</td>
                            <td align="center" colspan="1" rowspan="1">125(88)</td>
                            <td align="center" colspan="1" rowspan="1">88(83)</td>
                            <td align="center" colspan="1" rowspan="1">70(75.2)</td>
                            <td align="center" colspan="1" rowspan="1">60(83.3)</td>
                            <td align="center" colspan="1" rowspan="1">18(35.2)</td>
                            <td align="center" colspan="1" rowspan="1">24(75)</td>
                            <td align="center" colspan="1" rowspan="1">9(52.9)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">IMP</td>
                            <td align="center" colspan="1" rowspan="1">23(16.1)</td>
                            <td align="center" colspan="1" rowspan="1">6(5.6)</td>
                            <td align="center" colspan="1" rowspan="1">3(3.2)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                            <td align="center" colspan="1" rowspan="1">1(3.1)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">S</td>
                            <td align="center" colspan="1" rowspan="1">124(87.3)</td>
                            <td align="center" colspan="1" rowspan="1">63(59.4)</td>
                            <td align="center" colspan="1" rowspan="1">90(96.7)</td>
                            <td align="center" colspan="1" rowspan="1">49(68)</td>
                            <td align="center" colspan="1" rowspan="1">48(94.1)</td>
                            <td align="center" colspan="1" rowspan="1">29(90.6)</td>
                            <td align="center" colspan="1" rowspan="1">10(58.8)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">E</td>
                            <td align="center" colspan="1" rowspan="1">122(85.9)</td>
                            <td align="center" colspan="1" rowspan="1">61(57.5)</td>
                            <td align="center" colspan="1" rowspan="1">88(94.6)</td>
                            <td align="center" colspan="1" rowspan="1">50(69.4)</td>
                            <td align="center" colspan="1" rowspan="1">47(92.1)</td>
                            <td align="center" colspan="1" rowspan="1">28(87.5)</td>
                            <td align="center" colspan="1" rowspan="1">12(70.5)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">TE</td>
                            <td align="center" colspan="1" rowspan="1">129(90.8)</td>
                            <td align="center" colspan="1" rowspan="1">60(56.6)</td>
                            <td align="center" colspan="1" rowspan="1">84(90.3)</td>
                            <td align="center" colspan="1" rowspan="1">52(72.2)</td>
                            <td align="center" colspan="1" rowspan="1">44(86.2)</td>
                            <td align="center" colspan="1" rowspan="1">28(87.5)</td>
                            <td align="center" colspan="1" rowspan="1">14(82.3)</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p>Data were presented as numbers (No.) and percentages (100%) of pathogenic bacteria that were resistant to antimicrobials. AB: Antimicrobials, P: Penicillin 10IU, AX: amoxicillin 25&#x00b5;g, AMC: Amoxiclav 30&#x00b5;g, CRO: Ceftriaxone 30&#x00b5;g, CTX: Cefotaxime 30&#x00b5;g, CAZ: Ceftazidime 30&#x00b5;g, GM: Gentamicin 10&#x00b5;g, TM: Tobramycin 10&#x00b5;g, NA: Amikacin 30&#x00b5;g, CIP: Ciprofloxacin 5&#x00b5;g, IMP: Imipenem 10&#x00b5;g, S: Streptomycin 10&#x00b5;g, E: Erythromycin 30&#x00b5;g, TE: Tetracycline 30&#x00b5;g, MRSA: Methicillin resistance 
                            <italic toggle="yes">S.aureus</italic>, MSSA: Methicillin sensitive 
                            <italic toggle="yes">S.aureus</italic>.</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Numbers and percentages of overall resistance to 14 antimicrobials of pathogenic bacteria isolated from hospitalized patients with burn infection during January 2015 to December 2017.</title>
                    <p>N=513.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16432/b880d4af-6aa9-41ad-abb9-9cd3a65f0f2a_figure2.gif"/>
            </fig>
            <table-wrap id="T4" orientation="portrait" position="anchor">
                <label>Table 4. </label>
                <caption>
                    <title>Numbers and percentages of multi-drug resistant, extended-drug resistant and pan-drug resistant pathogenic bacteria isolated from hospitalized patients with burn infection during January 2015 to December 2017.</title>
                    <p>N=513.</p>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="center" colspan="1" rowspan="1" valign="top">Pathogenic bacteria</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">MDR
                                <break/>No. (%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">XDR
                                <break/>No. (%)</th>
                            <th align="center" colspan="1" rowspan="1" valign="top">PDR
                                <break/>No. (%)</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
                                <italic toggle="yes">P. aeruginosa</italic> 142</td>
                            <td align="center" colspan="1" rowspan="1">130(91.5)</td>
                            <td align="center" colspan="1" rowspan="1">4(2.8)</td>
                            <td align="center" colspan="1" rowspan="1">8(5.6)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">MRSA 106</td>
                            <td align="center" colspan="1" rowspan="1">95(89.6)</td>
                            <td align="center" colspan="1" rowspan="1">6(5.6)</td>
                            <td align="center" colspan="1" rowspan="1">5(4.7)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">K. pneumoniae</italic> 93</td>
                            <td align="center" colspan="1" rowspan="1">84(90.3)</td>
                            <td align="center" colspan="1" rowspan="1">6(6.4)</td>
                            <td align="center" colspan="1" rowspan="1">3(3.2)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">MSSA 72</td>
                            <td align="center" colspan="1" rowspan="1">70(97.2)</td>
                            <td align="center" colspan="1" rowspan="1">2(2.7)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">E. coli</italic> 51</td>
                            <td align="center" colspan="1" rowspan="1">42(82.3)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">A.baumannii</italic> 32</td>
                            <td align="center" colspan="1" rowspan="1">29(90.6)</td>
                            <td align="center" colspan="1" rowspan="1">2(6.2)</td>
                            <td align="center" colspan="1" rowspan="1">1(3.1)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">
									
                                <italic toggle="yes">S.typhi</italic> 17</td>
                            <td align="center" colspan="1" rowspan="1">14(82.3)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                            <td align="center" colspan="1" rowspan="1">0(0.0)</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">Total 513</td>
                            <td align="center" colspan="1" rowspan="1">464(90.4)</td>
                            <td align="center" colspan="1" rowspan="1">20(14)</td>
                            <td align="center" colspan="1" rowspan="1">17(3.3)</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p>Data were presented as numbers (No.) and percentages (%) of pathogenic bacteria. MDR: multi-drug resistant, XDR: extensive-drug resistant, PDR: pan-drug resistant, MRSA: Methicillin resistance 
                            <italic toggle="yes">S.aureus</italic>, MSSA: Methicillin sensitive 
                            <italic toggle="yes">S.aureus</italic>.</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <title>Modified double disc synergy test show positive result of extended spectrum beta-lactamase-producing 
                        <italic toggle="yes">Pseudomonas aeruginosa</italic> on Muller-Hinton agar.</title>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16432/b880d4af-6aa9-41ad-abb9-9cd3a65f0f2a_figure3.gif"/>
            </fig>
            <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                <label>Figure 4. </label>
                <caption>
                    <title>Numbers and percentages of extended spectrum beta-lactamase-producing bacteria isolated from hospitalized patients with burn infection during January 2015 to December 2017.</title>
                    <p>ESBL: extended spectrum beta-lactamase-producing bacteria.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/16432/b880d4af-6aa9-41ad-abb9-9cd3a65f0f2a_figure4.gif"/>
            </fig>
            <supplementary-material id="DS0" orientation="portrait" position="float" xlink:href="https://f1000researchdata.s3.amazonaws.com/datasets/15088/8fea1907-eaba-41dd-8542-07fe909a7798_Data.docx">
                <label>Test results for patient swabs</label>
            </supplementary-material>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>Burn infection is one of the most serious problems in hospitals caused by different pathogens that infect most patients who stay in hospitals for prolonged periods. In this study, 513 different bacterial strains were isolated from 295 swabs of hospitalized patients with burn infections over the three years. Gram negative bacteria were responsible for more than half of infections while gram positive bacteria accounted for 34.7% of overall bacterial isolates. 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> was the most common bacteria, accounting for 27.6% of total isolates. These results are in agreement with previous studies
                <sup>
                    <xref ref-type="bibr" rid="ref-20">20</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-23">23</xref>
                </sup>. 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> is one of the most important pathogens causing different infections such as bacteremia and burn infections
                <sup>
                    <xref ref-type="bibr" rid="ref-24">24</xref>
                </sup>. This pathogen is well adapted to the hospital environments due to biofilm formation that provides long survival advantages for the pathogen, and effectively prevent eradication by the host immune system or antimicrobial drug treatment
                <sup>
                    <xref ref-type="bibr" rid="ref-25">25</xref>
                </sup>. 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> has become responsible for more than 70% of mortality in burn patients
                <sup>
                    <xref ref-type="bibr" rid="ref-26">26</xref>,
                    <xref ref-type="bibr" rid="ref-27">27</xref>
                </sup> . The results of this study showed that MRSA was the second most common bacteria isolated from patients with burn infection, 106 isolates (20.6%) of total bacterial isolates, while, MSSA was the most 4
                <sup>th</sup> common pathogen with 72 isolates (14.1%). These results are similar with many previous studies
                <sup>
                    <xref ref-type="bibr" rid="ref-28">28</xref>,
                    <xref ref-type="bibr" rid="ref-29">29</xref>
                </sup>. 
                <italic toggle="yes">Staphylococcus aureus</italic> is the most common bacteria causing both hospital and community associated infections, including bacteremia, pneumonia and burn infection
                <sup>
                    <xref ref-type="bibr" rid="ref-30">30</xref>
                </sup>. Hospital-associated MRSA accounts for a high proportion of hospitalized infected with 
                <italic toggle="yes">S.aureus</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref-31">31</xref>
                </sup>. As compare with different bacteria that cause burn infection in hospitalized patients, MRSA-infections is associated with higher morbidity and mortality
                <sup>
                    <xref ref-type="bibr" rid="ref-32">32</xref>
                </sup>. 
                <italic toggle="yes">Klebsiella pneumoniae</italic> was the most 3
                <sup>rd</sup> common bacteria isolated from burn infection in this study with, 93 isolates (18.2%). This result is similar to past studies
                <sup>
                    <xref ref-type="bibr" rid="ref-33">33</xref>,
                    <xref ref-type="bibr" rid="ref-34">34</xref>
                </sup>. 
                <italic toggle="yes">Klebsiella pneumoniae</italic> is an opportunistic pathogen which causes serious infections like, urinary tract infection, pneumonia, burn infection, and soft tissue infections in compromised and hospitalized patients. It has number of virulence factors such as a capsule that enable this pathogen to colonize and provides phagocytosis resistance
                <sup>
                    <xref ref-type="bibr" rid="ref-35">35</xref>,
                    <xref ref-type="bibr" rid="ref-36">36</xref>
                </sup>. The results of this study showed that 
                <italic toggle="yes">Escherichia coli</italic>, 
                <italic toggle="yes">A.baumannii</italic> and 
                <italic toggle="yes">S.typhi</italic> were prevalent in different percentages, 10%, 6.2% 3.3%, respectively. Our results are similar with some previous studies
                <sup>
                    <xref ref-type="bibr" rid="ref-37">37</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-39">39</xref>
                </sup>. On the other hand, the results of the current study proved that there was a positive relationship between a longer stay in hospital and the high prevalence of pathogenic bacteria causing burn infections. Contaminated burning wards and duration of patients stay in hospital, in addition to the size of surface area of burned skin are the most important reasons to increase of persistent and multiplication of pathogenic bacteria in the burned areas
                <sup>
                    <xref ref-type="bibr" rid="ref-40">40</xref>
                </sup>. There are a number of factors that influence the emergence of infection in burns patient including; prolonged hospital stays, contamination of burns wards, nature of burn injury itself, as well as intensive diagnostic and therapeutic procedures
                <sup>
                    <xref ref-type="bibr" rid="ref-41">41</xref>,
                    <xref ref-type="bibr" rid="ref-42">42</xref>
                </sup>. Some studies suggested that burn infection is the most common type of infection, while, others studies reports show it to be bacteremia and pneumonia
                <sup>
                    <xref ref-type="bibr" rid="ref-43">43</xref>,
                    <xref ref-type="bibr" rid="ref-44">44</xref>
                </sup>. In this study, most pathogenic bacteria isolated from burn infection were highly resistant to most antimicrobials, especially against beta-lactams and 3rd generation cephalosporins., All pathogenic bacteria were MDR with high percentages and most of them were XDR,. 
                <italic toggle="yes">P. aeruginosa</italic> was the most common PDR- bacteria followed by MRSA and 
                <italic toggle="yes">A.baumannii</italic>. These results are similar with many previous studies
                <sup>
                    <xref ref-type="bibr" rid="ref-5">5</xref>,
                    <xref ref-type="bibr" rid="ref-45">45</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-47">47</xref>
                </sup>. Biofilm formation by microorganisms is one of the most important mechanisms in antimicrobials resistant, consisting of the irreversible assemblage of bacterial cells associated with a surface and enclosed in matrix of polysaccharides material
                <sup>
                    <xref ref-type="bibr" rid="ref-48">48</xref>
                </sup>. Biofilms are regarding as a major factor contribution to many chronic inflammatory diseases such as burn infection due to enabling bacteria to colonize the burned skin, altering growth rate and allowing genes to be transcribed that provide these pathogens to high resistance to antimicrobials and host immune system. The overuse and unsuitability of different antimicrobials to treat burn infections has led to the emergence of new MDR, XDR and PDR-bacterial strains that are able to resistant a wide range of many antimicrobials such as aminoglycosides, beta-lactams, cephalosporins, streptomycin and tetracycline
                <sup>
                    <xref ref-type="bibr" rid="ref-49">49</xref>,
                    <xref ref-type="bibr" rid="ref-50">50</xref>
                </sup>. Burn infection in hospitalized patients caused by MDR, XDR and PDR-gram negative and gram positive bacteria such as; 
                <italic toggle="yes">P. aeruginosa</italic>, 
                <italic toggle="yes">K. pneumoniae</italic>, MRSA, MSSA and 
                <italic toggle="yes">A.baumannii</italic> may lead to delays in burn healing, graft lose, as well as development of sepsis and death; therefore, determination of the risk factors for these pathogens infections is essential for infection control
                <sup>
                    <xref ref-type="bibr" rid="ref-47">47</xref>
                </sup>. The results of this study showed that 
                <italic toggle="yes">P. aeruginosa</italic> and 
                <italic toggle="yes">K. pneumoniae</italic> were the most common ESBL-producing gram negative bacteria followed by 
                <italic toggle="yes">A.baumannii</italic> and 
                <italic toggle="yes">E.coli</italic> while there was no any strain of ESBL- 
                <italic toggle="yes">S.typhi</italic>. These results are similar to previous studies
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>,
                    <xref ref-type="bibr" rid="ref-51">51</xref>,
                    <xref ref-type="bibr" rid="ref-52">52</xref>
                </sup>. Infections caused by ESBL-producing gram negative bacteria are associated with an increase of health care costs, morbidity and mortality
                <sup>
                    <xref ref-type="bibr" rid="ref-53">53</xref>,
                    <xref ref-type="bibr" rid="ref-54">54</xref>
                </sup>. Extended spectrum beta-lactamases (ESBLs) have been reported as one of the most important hospital-acquired infections such as burn infection and bacteremia
                <sup>
                    <xref ref-type="bibr" rid="ref-9">9</xref>,
                    <xref ref-type="bibr" rid="ref-55">55</xref>
                </sup>. Most bacteria harboring ESBLs are usually resistant to beta-lactam antibiotics and other classes of antimicrobials
                <sup>
                    <xref ref-type="bibr" rid="ref-56">56</xref>
                </sup>. These enzymes are carried in and transferred from bacteria to bacteria by plasmids
                <sup>
                    <xref ref-type="bibr" rid="ref-57">57</xref>,
                    <xref ref-type="bibr" rid="ref-58">58</xref>
                </sup>. The most important steps to ensure the safety of patients with burn infections are: to control the spread of ESBL-producing bacteria, isolation of colonized patients in sterile wards, and continuously performing antimicrobial sensitivity tests
                <sup>
                    <xref ref-type="bibr" rid="ref-59">59</xref>
                </sup>.</p>
        </sec>
        <sec sec-type="conclusions">
            <title>Conclusions</title>
            <p>There was a high incidence of MDR-bacteria causing burn infections in Al-Najaf hospital in Al-Najaf City, Iraq. 
                <italic toggle="yes">Pseudomonas aeruginosa</italic> was the most common MDR, XDR and PDR-bacteria, and the most common of ESBL-producing bacteria causing burn infection over three years followed by MRSA. Imipenem 10&#x00b5;g had good antibacterial activity against more than 93% of bacterial isolates. There was positive correlation between a long stay in hospital and high prevalence of pathogenic bacteria causing burn infection.</p>
        </sec>
        <sec>
            <title>Limitation of the study</title>
            <p>In this study, some gram negative and gram positive bacterial isolates are excluded because of the small number of isolates (less than seven isolates over the three years) such as 
                <italic toggle="yes">proteus spp</italic> (5 isolates), 
                <italic toggle="yes">citrobacter spp</italic> (4 isolates), 
                <italic toggle="yes">enterobacter spp</italic> (6 isolates) and 
                <italic toggle="yes">enterococcus spp</italic> (5 isolates). We think this small number of bacterial isolates don&#x2019;t has any significant effect on the results of this study.</p>
        </sec>
        <sec>
            <title>Data availability</title>
            <p>The data referenced by this article are under copyright with the following copyright statement: Copyright: &#x00ef;&#x00bf;&#x00bd; 2018 Aljanaby AAJ and Aljanaby IAJ</p>
            <p>Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
                <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/"/>
            </p>
            <p>Dataset 1: Test results for patient swabs 
                <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.5256/f1000research.15088.d211541">10.5256/f1000research.15088.d211541</ext-link>
                <sup>
                    <xref ref-type="bibr" rid="ref-60">60</xref>
                </sup>
				</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgement</title>
            <p>The authors are very thankful to all staff of laboratory of Al-Najaf central hospital in Al-Najaf City for provided all swabs during three years.</p>
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                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
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            <pub-date pub-type="epub">
                <day>17</day>
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                <copyright-statement>Copyright: &#x00a9; 2020 Walsh DM</copyright-statement>
                <copyright-year>2020</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport59146" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15088.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This paper provides an observational report of the number of drug resistant bacteria isolated from infected burn wounds in patients in a hospital in Iraq. Increasing numbers of drug resistant organisms are identified with increasing length of hospital stay. The most commonly identified organism was&#x00a0;
                <italic>Pseudomonas aeruginosa</italic>, a bacteria that commonly identified in burn wound infections.</p>
            <p> </p>
            <p> Overall, the science in this article is sound. Appropriate MDR testing is used and compared to accepted standards.</p>
            <p> </p>
            <p> Methods section:&#x00a0;It is unclear if an institutional review board approved this study; this needs to be directly mentioned in the methods section. No statistics were performed on this study; however, a simple Student's T test could be performed to determine statistical significance between two groups or analysis of variance (ANOVA) could be performed to show statistically significant differences between the number of isolates depending on length of hospital stay. This could&#x00a0;also be done for number and type of drug resistant organisms to show which antibiotic has the least resistance. Including statistics would strengthen this work.</p>
            <p> </p>
            <p> Discussion section: Why are biofilms mentioned at all? This seems out of place, especially since no testing was done to determine if these microbes are capable of making biofilms. This either needs to be removed or more appropriately addressed in the context of the study.</p>
            <p> </p>
            <p> Conclusions section: This could be strengthened. For example, it seems that a majority of the organisms were not resistant to imipenem. This is an important finding for this hospital and should be mentioned as an antibiotic that could help this facility control MDR infections. It would be helpful if the authors addressed the following questions in this section: What new information does this study provide? Is this important for the hospital&#x2019;s burn ward? Will this increase awareness of the prevalence of MDR organisms and encourage physicians to use imipenem for treatment of infections?</p>
            <p> </p>
            <p> Other comments: Metagenomic sequencing and biofilm testing would both be interesting additions to this study. Metagenomics could be used to determine what other bacteria were present in the infections that were not culturable.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>No</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Toxicology, microbiology, metagenomics, bioinformatics</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report45345">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.16432.r45345</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Chitnis</surname>
                        <given-names>Vikrant</given-names>
                    </name>
                    <xref ref-type="aff" rid="r45345a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r45345a1">
                    <label>1</label>Department of Pathology, Choithram Hospital and Research Center, Manik Bagh, Indore, India</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>2</day>
                <month>7</month>
                <year>2019</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2019 Chitnis V</copyright-statement>
                <copyright-year>2019</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport45345" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15088.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>
                <list list-type="order">
                    <list-item>
                        <p>Abstract needs rewriting&#x00a0;with focus on role of hospital infection control committee (HICC), if existing in hospital. How HICC has helped or not or will help in near future in preventing such infections in burn unit.&#x00a0;</p>
                    </list-item>
                    <list-item>
                        <p>Name of organism in abstract: staphylococcus typhi? No such organism exists either it is 
                            <italic>staphylococcus aureus</italic> or 
                            <italic>salmonella typhi</italic>.</p>
                    </list-item>
                    <list-item>
                        <p>There are many grammatical errors throughout the manuscript and very long sentences needs revision.</p>
                    </list-item>
                    <list-item>
                        <p>Study is not useful if you do not involve hospital infection practices and corrective action.</p>
                    </list-item>
                    <list-item>
                        <p>Is there an antibiotic policy in the hospital? If yes, are they drawing data to take care of antibiotic resistance? Are microbiologist active? Could be mentioned as corrective action in discussion or as it is suitable.</p>
                    </list-item>
                    <list-item>
                        <p>Role of hospital infection control committee?</p>
                    </list-item>
                    <list-item>
                        <p>What disinfectants were used?</p>
                    </list-item>
                    <list-item>
                        <p>Why they did not go for anaerobic culture?</p>
                    </list-item>
                    <list-item>
                        <p>Inclusion criteria of study needs redefining. Why patients above 60 were not chosen - justification needed, is it due to weak immunity or no such patient was admitted during study time?</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>I cannot comment. A qualified statistician is required.</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Biomedical waste disposal, hospital infection control, bacteriology, molecular biology, disinfectants.</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment4716-45345">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>aljanaby</surname>
                            <given-names>ahmed abduljabbar jaloob</given-names>
                        </name>
                        <aff>university of kufa, Iraq</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>There was not found competing interests</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>2</day>
                    <month>7</month>
                    <year>2019</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Greetings 
                    <list list-type="bullet">
                        <list-item>
                            <p>We think the abstract does not need&#x00a0;rewriting&#x00a0;with focus on role of hospital infection control committee (HICC), because the our work focused on types of bacteria and antimicrobials.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>The name of organism in abstract: 
                                <italic>Staphylococcus typhi</italic>. Yes, this is a print mistake, we are so sorry&#x00a0;the right name of organism in abstract must be 
                                <italic>Salmonella typhi.</italic>&#x00a0;We can correct this mistake.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>There was an antibiotic policy in the hospital according to antimicrobial sensitivity test protocol.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>The role of hospital infection control committee is not in our study, because the only goal of our study is the type of aerobic bacteria and antimicrobials.</p>
                        </list-item>
                        <list-item>
                            <p>About your question:&#x00a0;what disinfectants were used in hospitals? We don't know, this is hospital work only and we can not know about these security things.</p>
                        </list-item>
                        <list-item>
                            <p>About your question:&#x00a0;why they did not go for anaerobic culture? This is another different study, our study focused on aerobic bacteria only.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>About your question:&#x00a0;why patients above 60 were not chosen. Because we did not find&#x00a0;patients above 60 in our study.&#x00a0;</p>
                        </list-item>
                    </list>
                </p>
            </body>
        </sub-article>
        <sub-article article-type="response" id="comment4743-45345">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>aljanaby</surname>
                            <given-names>ahmed abduljabbar jaloob</given-names>
                        </name>
                        <aff>university of kufa, Iraq</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>9</day>
                    <month>7</month>
                    <year>2019</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Greetings,&#x00a0; 
                    <list list-type="bullet">
                        <list-item>
                            <p>We think the abstract does not need&#x00a0;rewriting&#x00a0;with focus on role of hospital infection control committee (HICC), because our work focused on types of bacteria and antimicrobials.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>The name of organism in abstract: 
                                <italic>staphylococcus typhi</italic>. Yes, this is print mistake, we are so sorry.</p>
                        </list-item>
                        <list-item>
                            <p>The write name of organism in abstract must be 
                                <italic>salmonella typhi.</italic>&#x00a0;We can correct this mistake.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>There was an antibiotic policy in the hospital according to antimicrobial sensitivity test protocol.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>The role of hospital infection control committee is not in our study, because the only goal of our study is the type of aerobic bacteria and antimicrobials.</p>
                        </list-item>
                        <list-item>
                            <p>About your question, what disinfectants were used in hospitals? We don't know, this is hospital work only and we can not know about these security things.</p>
                        </list-item>
                        <list-item>
                            <p>About your question.&#x00a0;Why they did not go for anaerobic culture? This is another different study, our study focused on aerobic bacteria only.&#x00a0;</p>
                        </list-item>
                        <list-item>
                            <p>About your question, Why patients above 60 were not chosen?&#x00a0;Because we did not find&#x00a0;patients above 60 in our study.&#x00a0;</p>
                        </list-item>
                    </list>
                </p>
            </body>
        </sub-article>
    </sub-article>
</article>
