<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="other" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.15569.2</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Note</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Association between intensity of STI screening and development of antimicrobial resistance in 
                    <italic>N. gonorrhoeae</italic> in 12 cities in the USA: An ecological study</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 2; peer review: 1 approved, 1 not approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Kenyon</surname>
                        <given-names>Chris R.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-2557-8998</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Antwerp, 2000, Belgium</aff>
                <aff id="a2">
                    <label>2</label>Department of Medicine, University of Cape Town, Cape Town, South Africa</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:chriskenyon0@gmail.com">chriskenyon0@gmail.com</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>27</day>
                <month>9</month>
                <year>2018</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2018</year>
            </pub-date>
            <volume>7</volume>
            <elocation-id>1237</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>25</day>
                    <month>9</month>
                    <year>2018</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Kenyon CR</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/7-1237/pdf"/>
            <abstract>
                <p>In this study, we assessed if there was a city-level association between sexually transmitted infection (STI) screening intensity in men who have sex with men and antimicrobial sensitivity in 
                    <italic toggle="yes">Neisseria gonorrhoeae</italic> in the United States, 2007 to 2013.  We found positive associations between STI screening intensity and increases in minimum inhibitory concentrations for cefixime and azithromycin, but not ceftriaxone.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>N. gonorrhoeae; STI screening; antimicrobial resistance; MSM</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
        <notes>
            <sec sec-type="version-changes">
                <label>Revised</label>
                <title>Amendments from Version 1</title>
                <p>A number of changes have been made including the following: The geometric mean MIC hasA number of changes have been made including the following: 
                    <list list-type="bullet">
                        <list-item>
                            <p>The geometric mean MIC has now been defined in the methods section.</p>
                        </list-item>
                        <list-item>
                            <p>We have included the following limitations of the study into the discussion: 
                                <list list-type="bullet">
                                    <list-item>
                                        <p>The decline in the absolute number of participants in the NHBS over time and the variation in participation rates by city could introduce biases.</p>
                                    </list-item>
                                    <list-item>
                                        <p>The possibility of reverse causation has been added to the discussion.</p>
                                    </list-item>
                                </list> </p>
                        </list-item>
                    </list> now been defined in the methods section. We have included the following limitations of the study into the discussion: 1. The decline in the absolute number of&#x00a0; participants in the NHBS over time and the variation in participation rates by city could introduce biases. 2. The possibility of reverse causation has been added to the discussion.</p>
            </sec>
        </notes>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>In the United States (USA) the prevalence of antimicrobial resistance in 
                <italic toggle="yes">Neisseria gonorrhoeae</italic> has typically been higher in men who have sex with men (MSM) than men who have sex with women (MSW) and women
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>,
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. It has also frequently been noted to be highest in the West and lowest in the South
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. Resistance has characteristically emerged in the West Coast and Hawaii and then spread eastward
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. This patterning of spread has led to the view that a primary driver of resistance is the import of resistant gonococci from eastern Asia and other world regions
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. In support of this theory, a number of studies have documented travel as a means of import of resistance in the USA
                <sup>
                    <xref ref-type="bibr" rid="ref-4">4</xref>,
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. A systematic review of risk factors associated with resistance in 
                <italic toggle="yes">N. gonorrhoeae,</italic> however, found that a history of sex with partners abroad was associated with resistance in 6 studies and was not associated with resistance in 7 studies
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>
                </sup>. Furthermore, the evidence that travel plays a seminal role in the emergence of resistance in MSM is not that compelling. An analysis of data from the Gonococcal Isolate Surveillance Project (GISP) 2002 to 2007, for example, found a pronounced increase in ciprofloxacin-resistance in MSM and a smaller and later increase in MSW; the association with recent travel was negative in MSM and borderline positive in MSW
                <sup>
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>.</p>
            <p>Antimicrobial resistance results largely from exposure to antimicrobials
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>,
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. This has been extensively documented 
                <italic toggle="yes">in vitro</italic> and 
                <italic toggle="yes">in vivo</italic> but for various reasons antimicrobial pressure at a population level may be more important than at an individual level in determining risk of development of antimicrobial resistance
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>,
                    <xref ref-type="bibr" rid="ref-10">10</xref>,
                    <xref ref-type="bibr" rid="ref-11">11</xref>
                </sup>. In the case of 
                <italic toggle="yes">N. gonorrhoeae,</italic> extensive antimicrobial exposure in a population would be predicted to result in a high prevalence of resistance genes in the pharyngeal microbiomes that could then be taken up (via transformation) by 
                <italic toggle="yes">N. gonorrhoeae</italic> and thereby provide it with a fitness conferring resistant phenotype in the setting of ongoing high antimicrobial consumption
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>. These insights have provided the rationale for ecological level studies that have generally found strong associations between the intensity of antimicrobial use and the prevalence of resistance to that antimicrobial
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>,
                    <xref ref-type="bibr" rid="ref-13">13</xref>
                </sup>. A recent study from the USA however found no association between an increase in 
                <italic toggle="yes">N. gonorrhoeae</italic> minimum inhibitory concentration (MIC) for azithromycin, ceftriaxone, cefixime and ciprofloxacin in the 23 GISP sites and the consumption of antimicrobials in the surrounding county
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>.  A weakness of this study design was the use of total-consumption-of-antimicrobials by the entire county population as the explanatory variable. Since resistance has repeatedly emerged in certain MSM populations, it would be prudent to assess if this emergence is correlated with antimicrobial consumption in this group rather than the entire population. One major driver of antimicrobial consumptions in MSM is sexually transmitted infection (STI) screening. Because most 
                <italic toggle="yes">N. gonorrhoeae</italic> and 
                <italic toggle="yes">Chlamydia trachomatis</italic> in MSM are carried asymptomatically in the anorectum and oropharynx, screening for these STIs may result in a large increase in antimicrobial exposure. A modeling study for example found that increasing annual gonorrhea/chlamydia screening in an MSM population from 3 to 50% would result in a 11-fold increase in antimicrobial exposure
                <sup>
                    <xref ref-type="bibr" rid="ref-14">14</xref>
                </sup>. In this exploratory paper we hypothesized that the intensity of STI testing plays a role in the genesis of resistance in MSM via the associated increase in antibiotic exposure.</p>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <p>We assessed if there was an ecological-city-level-association between the intensity of STI testing in MSM in the USA and the development of antimicrobial resistance in 
                <italic toggle="yes">N. gonorrhoeae</italic>.</p>
            <p>Data for STI screening was taken from the 2005, 2008 and 2011 
                <ext-link ext-link-type="uri" xlink:href="https://www.cdc.gov/hiv/statistics/systems/nhbs/reports.html">National HIV Behavioral Surveillance MSM (NHBS-MSM) studies</ext-link>. These cross-sectional surveys done in 21 cities asked respondents about STI testing in the preceding 12 months. The 2005 survey (n=10,030) asked if respondents had been tested for syphilis/gonorrhea/another-STI during the preceding 12 months (single question), the 2008 survey (n=8,175) if they had been tested for syphilis in the preceding 12 months, and the 2011 survey (n=8,012) if they had been tested for gonorrhea, chlamydia or syphilis in the previous 12 months (3 questions).</p>
            <p>Data for the change in city geometric mean 
                <italic toggle="yes">N. gonorrhoeae</italic> MIC between 2005 and 2013 was taken from GISP data
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. The geometric mean MIC was calculated as the 
                <italic toggle="yes">n</italic>th root of the product of 
                <italic toggle="yes">n</italic> MIC values. Spearman's correlation was used to assess if there was an association between the prevalence of STI testing in each survey and the increase in geometric mean MIC of cefixime, ceftriaxone and azithromycin in 
                <italic toggle="yes">N. gonorrhoeae</italic> between 2005 and 2013. These three antibiotics were chosen since these were the recommended antibiotics for 
                <italic toggle="yes">N. gonorrhoeae</italic> therapy since 2007
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>
                </sup>. All analyses were conducted in STATA 13.</p>
        </sec>
        <sec sec-type="results">
            <title>Results</title>
            <p>Twelve cities participated in both the NHBS-MSM and GISP surveys (n=9 for 2005, n=12 for 2008, n=12 for 2011). The intensity of self-reported STI testing in 2005 varied between 27% and 56% (median 43%, IQR 39&#x2013;49). There was little change in the relative positions of the cities in terms of testing intensity between 2005 and 2008 (rho=0.87, p=0.002) and 2005 to 2011 (rho=0.81, p=0.008). Cities in the West tended to have higher STI testing rates than cities in the South (
                <xref ref-type="fig" rid="f1">Figure 1</xref>). In 2011, the percent reporting testing for gonorrhea was strongly correlated with the percent reporting testing for chlamydia (rho=0.99, p&lt;0.001) and syphilis (rho=0.98, p&lt;0.001). In general, the 
                <italic toggle="yes">N. gonorrhoeae</italic> geometric mean MIC for cefixime and azithromycin increased more rapidly than ceftriaxone in all cities (data not shown).</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <p>Scatter plots of change in the minimum inhibitory concentrations (MICs) between 2007 and 2013 and the percent of respondents reporting in 2005 that they had a bacterial STI test in the prior 12 months for (
                        <bold>a</bold>) cefixime, (
                        <bold>b</bold>) ceftriaxone and (
                        <bold>c</bold>) azithromycin by USA city (data sources detailed in 
                        <italic toggle="yes">Methods</italic>).</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/17953/f0a6a0c3-5987-42b9-a1d8-bbc39226c075_figure1.gif"/>
            </fig>
            <p>In 2005, significant positive associations were found between STI screening and the increase in MIC of cefixime (rho=0.88, p=0.002), azithromycin (rho=0.93, p&lt;0.001) but not ceftriaxone (rho=0.27, p=0.491; 
                <xref ref-type="fig" rid="f1">Figure 1</xref>). Likewise in 2008, there was a positive correlation between the percent reporting testing for syphilis in the prior 12 months and increase in MIC of cefixime (rho=0.71, p=0.010), azithromycin (rho=0.791, p=0.002) but not ceftriaxone (rho=0.36, p=0.247). A positive association was also found for the percent reporting testing for gonorrhea in 2011 and an increase in MIC for cefixime (rho=0.63, p=0.026) and azithromycin (rho=0.64, p=0.024) but not ceftriaxone (rho=0.56, p=0.062). The results for chlamydia and syphilis testing were similar (data not shown).</p>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>There was a roughly two-fold variation in the proportion of MSM in different cities reporting testing for bacterial STIs. The proportion testing for bacterial STIs was associated with an increase of MIC for cefixime and azithromycin but not ceftriaxone. A plausible reason for the lack of association between ceftriaxone and MIC change is that ceftriaxone has been used almost exclusively in combination with azithromycin
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>,
                    <xref ref-type="bibr" rid="ref-15">15</xref>
                </sup> and even on its own may be less susceptible to the develop of resistance than cefixime and azithromycin
                <sup>
                    <xref ref-type="bibr" rid="ref-16">16</xref>
                </sup>. These findings are compatible with the theory that screening intensity plays a role in the selection of antimicrobial resistance in 
                <italic toggle="yes">N. gonorrhoeae</italic> in MSM. Alternatively they could reflect more intense screening in sites where there is more concern about antimicrobial resistance.</p>
            <p>The findings should however be regarded as tentative due to a number of methodological weaknesses: the sample size was small the outcome variable (increase in geometric MIC) referred to all men sampled in GISP and not just MSM, the explanatory variable was only evaluated at three time points, the explanatory variable measured &#x2018;STI testing&#x2019; and not &#x2018;STI screening&#x2019; and possible confounders were not controlled for. Increased testing could, for example, be associated with other factors that may be associated with antimicrobial resistance such as greater risk behavior, more frequent travel, HIV-infection and access to medical care. Likewise we did not control for changes over time in the percent of GISP samples derived from MSM which may have influenced the geometric mean MICs. Finally, the decline in the absolute number of participants in the NHBS surveys over time and variations in participation rates by city could introduce biases.</p>
            <p>Future studies that wish to evaluate the screening-resistance hypothesis could assess if there is an association between bacterial STI screening intensity and resistance in 
                <italic toggle="yes">N. gonorrhoeae</italic> in bigger samples in the USA or elsewhere. Testing this hypothesis in Europe would be instructive since the proportion of MSM reporting anal screening for bacterial STIs in the prior 12 months in 38 different European countries ranges from 9.1% in Romania to 79.6% in Malta (median 18.5%, IQR 13.5&#x2013;28.4)
                <sup>
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup>. Furthermore whilst two of these countries that report high STI screening rates in MSM (the United Kingdom
                <sup>
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup> and the Netherlands
                <sup>
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup>) have found an association between resistance in 
                <italic toggle="yes">N. gonorrhoeae</italic> and MSM
                <sup>
                    <xref ref-type="bibr" rid="ref-18">18</xref>,
                    <xref ref-type="bibr" rid="ref-19">19</xref>
                </sup>, other countries in Europe have not found this association
                <sup>
                    <xref ref-type="bibr" rid="ref-15">15</xref>
                </sup>.</p>
            <p>The recent emergence of combined azithromycin/ceftriaxone resistant 
                <italic toggle="yes">N. gonorrhoeae</italic> provides additional motivation to better characterize the underlying determinants of the differential emergence of resistance in MSM and other populations
                <sup>
                    <xref ref-type="bibr" rid="ref-20">20</xref>
                </sup>. If screening intensity is found to play a role then this could be taken into account in development of an optimal STI screening strategy. </p>
        </sec>
        <sec>
            <title>Data availability</title>
            <p>Data for STI screening: 
                <ext-link ext-link-type="uri" xlink:href="https://www.cdc.gov/hiv/statistics/systems/nhbs/reports.html">National HIV Behavioral Surveillance MSM (NHBS-MSM) studies</ext-link>
            </p>
            <p>GISP data: Technical appendix of 
                <xref ref-type="bibr" rid="ref-3">3</xref>
</p>
        </sec>
    </body>
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    <sub-article article-type="reviewer-report" id="report38823">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.17953.r38823</article-id>
            <title-group>
                <article-title>Reviewer response for version 2</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Goldstein</surname>
                        <given-names>Edward</given-names>
                    </name>
                    <xref ref-type="aff" rid="r38823a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r38823a1">
                    <label>1</label>Center&#x00a0;for&#x00a0;Communicable Disease Dynamics&#x00a0;(CCDD), Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>12</day>
                <month>10</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Goldstein E</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport38823" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15569.2"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>reject</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The reviewer wishes to thank the author for the revisions and the additional analyses performed. It appears to the reviewer that the results stated in the the Abstract and the results of the additional analyses in the response to the earlier reviewer comments are not fully compatible.</p>
            <p> The main finding of the paper, stated in the Abstract is: We found positive associations between STI screening intensity and increases in minimum inhibitory concentrations [between 2007-2013] for cefixime and azithromycin, but not ceftriaxone.&#x201d;</p>
            <p> At the same time, according to the author&#x2019;s response:</p>
            <p> 1. &#x201c;we have assessed Spearman's correlation between percent reporting screening for any STI in the previous 12 months and MIC for the three antimicrobials in the following year (2012):</p>
            <p> Azithromycin: Rho 0.45; P=0.141</p>
            <p> Cefixime: Rho 0.31; P=0.325</p>
            <p> Ceftriaxone: Rho=0.64; P=0.026&#x201d;</p>
            <p> Thus the only significant relation between screening levels during the previous year and MIC is for ceftriaxone, unlike the relation between screening and increases in MIC reported in the Abstract.</p>
            <p> 2.&#x00a0; We also assessed Spearman's correlation between percent reporting screening for any STI in the previous 12 months (2011 survey) and the fold change in geometric mean MIC for the three antimicrobials between</p>
            <p> a) 2005 and 2013:</p>
            <p> Azithromycin: Rho 0.77; P=0.003</p>
            <p> Cefixime: Rho 0.82; P=0.001</p>
            <p> Ceftriaxone: Rho=0.61; P=0.034</p>
            <p> Thus the relation between screening and increases in MIC between 2005-2013 is significant for all the three antibiotic classes, unlike the case of the increases in MIC between 2007-2013 reported in the Abstract.</p>
            <p> </p>
            <p> b) 2009 and 2013:</p>
            <p> Azithromycin: Rho 0.33; P=0.299</p>
            <p> Cefixime: Rho -0.50; P=0.100</p>
            <p> Ceftriaxone: Rho=0.58; P=0.047</p>
            <p> Thus the relation between screening and increases in MIC between 2009-2013 is significant only for ceftriaxone, which is exactly the opposite of the case of the increases in MIC between 2007-2013 reported in the Abstract.</p>
            <p> Overall, the findings stated in the Abstract reflect the results of some of the analyses, while other analyses yield different results. The author needs to think of a way for framing the results to accommodate all the findings.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Infectious Disease Epidemiology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to state that I do not consider it to be of an acceptable scientific standard, for reasons outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment4064-38823">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Kenyon</surname>
                            <given-names>Chris</given-names>
                        </name>
                        <aff>Institute of Tropical Medicine, Antwerp, Belgium</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>No competing interests to declare</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>12</day>
                    <month>10</month>
                    <year>2018</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Reply:</p>
                <p> Thank you for pointing this inconsistency out. To optimally deal with this I have added the results comparing the 2011 STI screening prevalence with the 2012 MICs to the methods, results and discussion sections.</p>
                <p> 
                    <bold>The sentence referring to the results in the abstract has been reworded to the following:</bold>
                </p>
                <p> We found positive associations between STI screening intensity and increases in minimum inhibitory concentrations for cefixime and azithromycin, but not ceftriaxone when using change in city geometric mean 
                    <italic>N. gonorrhoeae</italic> MIC between 2005 and 2013.</p>
                <p> 
                    <bold>The following text has been added to the methods section:</bold>
                </p>
                <p> The geometric mean MIC was calculated as the 
                    <italic>n</italic>th root of the product of 
                    <italic>n</italic> MIC values. Spearman's correlation was used to assess if there was an association between (1) the prevalence of STI testing in each survey and the increase in geometric mean MIC of cefixime, ceftriaxone and azithromycin in 
                    <italic>N. gonorrhoeae</italic> between 2005 and 2013 and (2) the percent reporting screening for any STI in the 2011 survey and geometric mean MIC for the three antimicrobials in the following year.</p>
                <p> 
                    <bold>The following text has been added to the results section:</bold>
                </p>
                <p> Spearman's correlation between percent reporting screening for any STI in 2011 and geometric mean MIC for the three antimicrobials in the following year revealed a positive association for ceftriaxone (rho=0.64, p=0.026) but not for azithromycin (rho=0.45, p=0.141) or cefixime (rho=0.31, p=0.325).</p>
                <p> 
                    <bold>The new results are then discussed in the discussion as follows:</bold>
                </p>
                <p> The proportion testing for bacterial STIs was associated with an increase of MIC for cefixime and azithromycin but not ceftriaxone over the time period 2005 to 2013. The correlations between percent screening in 2011 and MIC in the following year were different in that the only significant association was for ceftriaxone. Of note all six correlations between percent screening and MIC were positive. The difference between the two types of analyses related to the strengths of the associations.</p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report38824">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.17953.r38824</article-id>
            <title-group>
                <article-title>Reviewer response for version 2</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Stobberingh</surname>
                        <given-names>Ellen</given-names>
                    </name>
                    <xref ref-type="aff" rid="r38824a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r38824a1">
                    <label>1</label>Care And Public Health Research Institute (CAPHRI), Maastricht University Medical Centre (MUMC)&#x00a0;, Maastricht, The Netherlands</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>1</day>
                <month>10</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Stobberingh E</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport38824" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15569.2"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>No further comments</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>I cannot comment. A qualified statistician is required.</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>My&#x00a0;expertise includes microbiology, bacteriology, and antimicrobial&#x00a0;susceptibility</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report38243">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.16982.r38243</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Stobberingh</surname>
                        <given-names>Ellen</given-names>
                    </name>
                    <xref ref-type="aff" rid="r38243a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r38243a1">
                    <label>1</label>Care And Public Health Research Institute (CAPHRI), Maastricht University Medical Centre (MUMC)&#x00a0;, Maastricht, The Netherlands</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>24</day>
                <month>9</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Stobberingh E</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport38243" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15569.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The manuscript describes the association between STI screening and antimicrobial resistance development of N. gonorrhoeae. Although of interest there are several questions which need to be answered:</p>
            <p> </p>
            <p> 
                <bold>Material and Methods:</bold> 
                <list list-type="bullet">
                    <list-item>
                        <p>The number of participants&#x00a0;reduced over time: 10,030 in 2005 and 8,012 in 2011.&#x00a0;Also&#x00a0;there was a difference&#x00a0;in participation rate in the different&#x00a0;cities. &#x00a0;</p>
                        <p> What is the influence of the decreased participation rate over time and the&#x00a0;variation in&#x00a0;the participation in the different cities on the&#x00a0;interpretation of the data?&#x00a0;</p>
                    </list-item>
                    <list-item>
                        <p>In 2008 (only syphilis)&#x00a0;and in the two other years in addition N. gonorrhoeae, other&#x00a0;STI or&#x00a0;Chlamydia&#x00a0;were&#x00a0;tested.&#x00a0;What was the reason for this difference?</p>
                    </list-item>
                    <list-item>
                        <p>How many&#x00a0;N. gonorrhoeae&#x00a0;isolates were included in the different years?</p>
                    </list-item>
                    <list-item>
                        <p>Was the microbiological&#x00a0;method to&#x00a0;isolate, identify&#x00a0;and antibiotic susceptibility&#x00a0;testing over testing similar over time? Which method was&#x00a0;used for susceptibility testing?</p>
                    </list-item>
                    <list-item>
                        <p>Please provide range and GM MIC values of the three antibiotica&#x00a0;testing in the&#x00a0;different years,</p>
                    </list-item>
                </list> </p>
            <p> 
                <bold>Figure 1:</bold> 
                <list list-type="bullet">
                    <list-item>
                        <p>The horizontal axis mentioned an&#x00a0;increase in MIC.&#x00a0;What was the reference&#x00a0;MIC?</p>
                    </list-item>
                </list> </p>
            <p> 
                <bold>Dicussion:</bold> 
                <list list-type="bullet">
                    <list-item>
                        <p>Was there a change in therapy&#x00a0;over time among the participants. All&#x00a0;three&#x00a0;antibiotica&#x00a0;are mentioned in the guidelines, but is there information concerning the therapy&#x00a0;prescribed over time in the different cities / participants?</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>I cannot comment. A qualified statistician is required.</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Partly</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>My&#x00a0;expertise includes microbiology, bacteriology, and antimicrobial&#x00a0;susceptibility</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment4008-38243">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Kenyon</surname>
                            <given-names>Chris</given-names>
                        </name>
                        <aff>Institute of Tropical Medicine, Antwerp, Belgium</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>I have no competing interests</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>25</day>
                    <month>9</month>
                    <year>2018</year>
                </pub-date>
            </front-stub>
            <body>
                <p>The manuscript describes the association between STI screening and antimicrobial resistance development of N. gonorrhoeae. Although of interest there are several questions which need to be answered:</p>
                <p>
                    <bold>Material and Methods:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>The number of participants&#x00a0;reduced over time: 10,030 in 2005 and 8,012 in 2011.&#x00a0;Also&#x00a0;there was a difference&#x00a0;in participation rate in the different&#x00a0;cities. &#x00a0;What is the influence of the decreased participation rate over time and the&#x00a0;variation in&#x00a0;the participation in the different cities on the&#x00a0;interpretation of the data?&#x00a0;</p>
                        </list-item>
                    </list> 
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>Indeed both the decline in the absolute number of participants and the variation by city could introduce biases. This additional limitation has been added to the discussion.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>In 2008 (only syphilis)&#x00a0;and in the two other years in addition N. gonorrhoeae, other&#x00a0;STI or&#x00a0;Chlamydia&#x00a0;were&#x00a0;tested.&#x00a0;What was the reason for this difference?</p>
                        </list-item>
                    </list> 
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>These differences reflect differences in the questions asked in the various surveys. In 2008, for example, </bold>
                    <bold>respondents were asked if they had been tested for syphilis in the preceding 12 months, whereas in the 2011 survey they were asked if they had been tested for gonorrhea, chlamydia or syphilis in the previous 12 months. This is made clear in the methods section.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>How many&#x00a0;N. gonorrhoeae&#x00a0;isolates were included in the different years?</p>
                        </list-item>
                    </list> 
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>Between 2005 and 2013, 44,144 isolates were tested. The report does not detail the breakdown of number tested by year.</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>Was the microbiological&#x00a0;method to&#x00a0;isolate, identify&#x00a0;and antibiotic susceptibility&#x00a0;testing over testing similar over time? Which method was&#x00a0;used for susceptibility testing?</p>
                        </list-item>
                    </list> 
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>There were small changes in the laboratory protocol used. The protocol used and these changes are detailed in the Kirkcaldy et al report as follows </bold>
                    <bold>[1]</bold>
                    <bold>:</bold>
                </p>
                <p>
                    <bold>"Gonococcal isolates collected at each sentinel</bold>
                </p>
                <p>
                    <bold>clinic are subcultured at the clinic&#x2019;s local public health laboratory on supplemented chocolate medium and frozen in Trypticase soy broth containing 20% glycerol. </bold>
                </p>
                <p>
                    <bold>Isolates are shipped monthly to one of the regional</bold>
                </p>
                <p>
                    <bold>reference laboratories, where they are tested for Beta-lactamase production and susceptibility to azithromycin, penicillin, tetracycline, ciprofloxacin, spectinomycin, cefixime, and ceftriaxone using the agar dilution method.</bold>
                </p>
                <p>
                    <bold>Isolates were inoculated on Difco GC medium base supplemented with</bold>
                </p>
                <p>
                    <bold>1% IsoVitaleX enrichment (Becton-Dickinson Diagnostic Systems,</bold>
                </p>
                <p>
                    <bold>Sparks, MD). During 2005 to 2007, the lowest azithromycin concentration</bold>
                </p>
                <p>
                    <bold>tested was 0.008 ug/ml; this increased to 0.03 ug/ml in 2008. </bold>
                </p>
                <p>
                    <bold>The routine testing range for azithromycin extended to 16.0 ug/ml during</bold>
                </p>
                <p>
                    <bold>2005 to 2013. Laboratories were asked to conduct agar dilution testing to identify an endpoint for isolates with an MIC of 16.0ug/ml on the initial</bold>
                </p>
                <p>
                    <bold>testing run. Testing to an endpoint was not conducted on three isolates</bold>
                </p>
                <p>
                    <bold>collected during 2005 to 2013. In the absence of Clinical and Laboratory</bold>
                </p>
                <p>
                    <bold>Standards Institute (CLSI) breakpoints for gonococcal azithromycin susceptibility or resistance, we defined reduced azithromycin susceptibility for this analysis as an MIC of&#x00a0; 2.0 ug/ml. Quality assurance processes are described in detail in the GISP protocol.</bold>
                </p>
                <p>
                    <bold>To ensure accuracy and reproducibility of antimicrobial susceptibility</bold>
                </p>
                <p>
                    <bold>results from the regional reference laboratories, a set of seven control N. gonorrhoeae strains with known MICs of various antimicrobials are included with each susceptibility run. In addition, reference laboratories test a CDC-provided panel of 15 unidentified strains twice yearly to compare results and ensure consistency among laboratories. The results obtained from the testing of control strains and CDC-provided panels are used for internal quality assurance."</bold>
                </p>
                <p>&#x00a0; 
                    <list list-type="bullet">
                        <list-item>
                            <p>Please provide range and GM MIC values of the three antibiotica&#x00a0;testing in the&#x00a0;different years,</p>
                        </list-item>
                    </list> 
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>This data is not provided in the paper that reports the GISP results </bold>
                    <bold>[1]</bold>
                    <bold>. In the online Technical Appendix file of this paper the following data is however reported: </bold>
                </p>
                <p>
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3201/eid2310.170488">https://doi.org/10.3201/eid2310.170488</ext-link>
                </p>
                <p>
                    <bold>The geometric MIC of cefixime (Table 1), ceftriaxone (Table 2) and azithromycin (Table 3) by site and year. Table 8 presents the median and interdecile range of the 3 antimicrobials by site.</bold>
                </p>
                <p>
                    <bold>Figure 1:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>The horizontal axis mentioned an&#x00a0;increase in MIC.&#x00a0;What was the reference&#x00a0;MIC?</p>
                        </list-item>
                    </list> 
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>The horizontal axis is the change in MIC between 2007 and 2013.</bold>
                </p>
                <p>
                    <bold>Discussion:</bold> 
                    <list list-type="bullet">
                        <list-item>
                            <p>Was there a change in therapy&#x00a0;over time among the participants. All&#x00a0;three&#x00a0;antibiotica&#x00a0;are mentioned in the guidelines, but is there information concerning the therapy&#x00a0;prescribed over time in the different cities / participants?</p>
                        </list-item>
                    </list> 
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>This information is not provided in the report.</bold>
                </p>
                <p>
                    <bold>References:</bold>
                </p>
                <p>1.&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0; Kirkcaldy RD, Bartoces MG, Soge OO, Riedel S, Kubin G, Del Rio C, et al. Antimicrobial Drug Prescription and Neisseria gonorrhoeae Susceptibility, United States, 2005-2013. Emerg Infect Dis. 2017;23(10):1657-63. Epub 2017/09/21. doi: 10.3201/eid2310.170488. PubMed PMID: 28930001; PubMed Central PMCID: PMCPMC5621530</p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report37099">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.16982.r37099</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Goldstein</surname>
                        <given-names>Edward</given-names>
                    </name>
                    <xref ref-type="aff" rid="r37099a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r37099a1">
                    <label>1</label>Center&#x00a0;for&#x00a0;Communicable Disease Dynamics&#x00a0;(CCDD), Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>20</day>
                <month>8</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Goldstein E</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport37099" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.15569.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The paper under review studies the association between the frequency of STI screening in MSM and changes in geometric mean MICs for certain antibiotics in 
                <italic>N. gonorrhoeae</italic> samples in select US cities. An important potential source of bias in such analysis could be reverse causality, namely places with higher prevalence of drug resistance for gonorrhea, as well as syphilis in MSM may initiate more STI screening efforts. Below are some questions/suggestions to the author.</p>
            <p> 1. Please define geometric mean MIC. Also, since one refers to geometric mean, it might be more reasonable to examine fold changes (increase or decreases) in geometric mean MIC (or logarithm of thereof) in the correlation analysis.</p>
            <p> 2. Nine cities reported STI screening information in 2005 (Figure 1), and 12 cities reported STI screening information in 2013. The reviewer would suggest to correlate the frequency of STI screening in 2013 with</p>
            <p> &#x00a0; 
                <list list-type="bullet">
                    <list-item>
                        <p>Geometric mean MICs in 2013</p>
                    </list-item>
                    <list-item>
                        <p>(Fold) change in geometric mean MICs between 2009 and 2013</p>
                    </list-item>
                    <list-item>
                        <p>(Fold) change in geometric mean MICs between 2005 and 2013</p>
                    </list-item>
                </list> &#x00a0;</p>
            <p> For the 2005 screening frequencies, it would be interesting to correlate them with geometric mean MICs (in 2013, and possibly 2005), and not only changes in thereof.</p>
            <p> 3. In ref. 3, no association was found between rates of antibiotic prescribing and geometric mean MICs. Perhaps the results of the paper under review are affected by reverse causality, namely places with higher prevalence of drug resistance for gonorrhea, as well as syphilis in MSM may initiate more STI screening efforts. For example, the California sites had both high geometric mean MIC for ciprofloxacin in 2005 (ref. 3), and high frequency of screening (see also
                <sup>
                    <xref ref-type="bibr" rid="rep-ref-37099-1">1</xref>
                </sup>). Currently, this possibility is not mentioned in the Discussion. The reviewer was also wondering if there is a correlation between the fold change in screening frequency and the fold change in geometric mean MICs between 2005 and 2013.</p>
            <p> 4. Are other variables in NHBS-MSM surveys (possibly rate of change of sexual partners, or a number of recent sexual partners) correlated with geometric mean MICs/changes in thereof?</p>
            <p> 5. In the Discussion, it is mentioned that &#x201c;the sample size was small (9 or 12)&#x201d;. Currently, only 9 cities are used in the correlation analysis, as far as the reviewer could see.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Partly</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Partly</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Infectious Disease Epidemiology</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <back>
            <ref-list>
                <title>References</title>
                <ref id="rep-ref-37099-1">
                    <label>1</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Increases in fluoroquinolone-resistant Neisseria gonorrhoeae among men who have sex with men--United States, 2003, and revised recommendations for gonorrhea treatment, 2004.</article-title>
                        <source>
                            <italic>MMWR Morb Mortal Wkly Rep</italic>
                        </source>.<year>2004</year>;<volume>53</volume>(<issue>16</issue>) :<fpage>335</fpage>-<lpage>8</lpage>
                        <pub-id pub-id-type="pmid">15123985</pub-id>
                    </mixed-citation>
                </ref>
            </ref-list>
        </back>
        <sub-article article-type="response" id="comment4009-37099">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Kenyon</surname>
                            <given-names>Chris</given-names>
                        </name>
                        <aff>Institute of Tropical Medicine, Antwerp, Belgium</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>I have no competing interests</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>25</day>
                    <month>9</month>
                    <year>2018</year>
                </pub-date>
            </front-stub>
            <body>
                <p>The paper under review studies the association between the frequency of STI screening in MSM and changes in geometric mean MICs for certain antibiotics in&#x00a0;
                    <italic>N. gonorrhoeae</italic>&#x00a0;samples in select US cities. An important potential source of bias in such analysis could be reverse causality, namely places with higher prevalence of drug resistance for gonorrhea, as well as syphilis in MSM may initiate more STI screening efforts. Below are some questions/suggestions to the author.</p>
                <p>1. Please define geometric mean MIC. Also, since one refers to geometric mean, it might be more reasonable to examine fold changes (increase or decreases) in geometric mean MIC (or logarithm of thereof) in the correlation analysis.</p>
                <p>
                    <bold>Reply: </bold>
                </p>
                <p>
                    <bold>The geometric mean MIC has now been defined in the methods section.</bold>
                </p>
                <p>2. Nine cities reported STI screening information in 2005 (Figure 1), and 12 cities reported STI screening information in 2013. The reviewer would suggest to correlate the frequency of STI screening in 2013 with</p>
                <p>&#x00a0; 
                    <list list-type="bullet">
                        <list-item>
                            <p>Geometric mean MICs in 2013</p>
                        </list-item>
                        <list-item>
                            <p>(Fold) change in geometric mean MICs between 2009 and 2013</p>
                        </list-item>
                        <list-item>
                            <p>(Fold) change in geometric mean MICs between 2005 and 2013</p>
                        </list-item>
                    </list> &#x00a0;</p>
                <p>For the 2005 screening frequencies, it would be interesting to correlate them with geometric mean MICs (in 2013, and possibly 2005), and not only changes in thereof.</p>
                <p>
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>The third NHBS survey was in 2011 (not 2013) and thus we have assessed Spearman's correlation between percent reporting screening for any STI in the previous 12 months and MIC for the three antimicrobials in the following year (2012):</bold>
                </p>
                <p>
                    <bold>Azithromycin: Rho 0.45; P=0.141</bold>
                </p>
                <p>
                    <bold>Cefixime: Rho 0.31; P=0.325</bold>
                </p>
                <p>
                    <bold>Ceftriaxone: Rho=0.64; P=0.026</bold>
                </p>
                <p>
                    <bold>We also assessed Spearman's correlation between percent reporting screening for any STI in the previous 12 months (2011 survey) and the fold change in geometric mean MIC for the three antimicrobials between</bold>
                </p>
                <p>
                    <bold>a) 2005 and 2013:</bold>
                </p>
                <p>
                    <bold>Azithromycin: Rho 0.77; P=0.003</bold>
                </p>
                <p>
                    <bold>Cefixime: Rho 0.82; P=0.001</bold>
                </p>
                <p>
                    <bold>Ceftriaxone: Rho=0.61; P=0.034</bold>
                </p>
                <p>
                    <bold>b) 2009 and 2013:</bold>
                </p>
                <p>
                    <bold>Azithromycin: Rho 0.33; P=0.299</bold>
                </p>
                <p>
                    <bold>Cefixime: Rho -0.50; P=0.100</bold>
                </p>
                <p>
                    <bold>Ceftriaxone: Rho=0.58; P=0.047</bold>
                </p>
                <p>3. In ref. 3, no association was found between rates of antibiotic prescribing and geometric mean MICs. Perhaps the results of the paper under review are affected by reverse causality, namely places with higher prevalence of drug resistance for gonorrhea, as well as syphilis in MSM may initiate more STI screening efforts. For example, the California sites had both high geometric mean MIC for ciprofloxacin in 2005 (ref. 3), and high frequency of screening (see also
                    <ext-link ext-link-type="uri" xlink:href="https://f1000research.com/articles/7-1237/v1#rep-ref-37099-1">
                        <sup>1</sup>
                    </ext-link>). Currently, this possibility is not mentioned in the Discussion. The reviewer was also wondering if there is a correlation between the fold change in screening frequency and the fold change in geometric mean MICs between 2005 and 2013.</p>
                <p>
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>Thank you for this interesting suggestion which has been added to the discussion.</bold>
                </p>
                <p>4. Are other variables in NHBS-MSM surveys (possibly rate of change of sexual partners, or a number of recent sexual partners) correlated with geometric mean MICs/changes in thereof?</p>
                <p>
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>Whilst we agree this would be interesting to investigate, we did not assess these correlations in this small study.&#x00a0; </bold>
                </p>
                <p>5. In the Discussion, it is mentioned that &#x201c;the sample size was small (9 or 12)&#x201d;. Currently, only 9 cities are used in the correlation analysis, as far as the reviewer could see.</p>
                <p>
                    <bold>Reply:</bold>
                </p>
                <p>
                    <bold>The sample size for 2005 was 9 and therefore in Figure 1, where one of the variables is from 2005, only 9 data points can be used. There were however 12 data points for the other 2 surveys and these were used in the analyses&#x00a0;using these surveys. </bold>
                </p>
                <p>
                    <bold>References:</bold>
                </p>
                <p>1.&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0;&#x00a0; Kirkcaldy RD, Bartoces MG, Soge OO, Riedel S, Kubin G, Del Rio C, et al. Antimicrobial Drug Prescription and Neisseria gonorrhoeae Susceptibility, United States, 2005-2013. Emerg Infect Dis. 2017;23(10):1657-63. Epub 2017/09/21. doi: 10.3201/eid2310.170488. PubMed PMID: 28930001; PubMed Central PMCID: PMCPMC5621530.</p>
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        </sub-article>
    </sub-article>
</article>
