<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.14584.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Individual typological differences in a neurally distributed semantic processing system: Revisiting the 
                    <italic>Science</italic> article by Mitchell 
                    <italic>et al</italic>. on computational neurolinguistics</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 1 approved with reservations]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Akama</surname>
                        <given-names>Hiroyuki</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1777-497X</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Tokyo Institute of Technology, Tokyo, 152-8552, Japan</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:akama.h.aa@m.titech.ac.jp">akama.h.aa@m.titech.ac.jp</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>24</day>
                <month>4</month>
                <year>2018</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2018</year>
            </pub-date>
            <volume>7</volume>
            <elocation-id>487</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>19</day>
                    <month>4</month>
                    <year>2018</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Akama H</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/7-487/pdf"/>
            <abstract>
                <p>
                    <bold>Background:</bold> Revisiting the 2008 
                    <italic toggle="yes">Science</italic> article by Mitchell 
                    <italic toggle="yes">et al</italic>. on computational neurolinguistics, individual typological differences were found as striking characteristics in the patterns of informative voxels crucial for the distributed semantic processing system.</p>
                <p>
                    <bold>Methods:</bold> The results of different feature selection methods (ANOVA and Stability) were compared based on the open datasets of each subject for evaluating how these features were decisive in predicting human brain activity associated with language meaning.</p>
                <p>
                    <bold>Results:</bold> In general, the two selection results were similar and the voxel-wise ranks were correlated but they became extremely dispersive for a subgroup of subjects exhibiting mediocre precision when examined without regularization. Quite interestingly, looking at the anatomical location of these voxels, it appears that the modality-specific areas were likely to be monitored by the Stability score (indexing &#x201c;identity&#x201d;), and that the ANOVA (emphasizing &#x201c;difference&#x201d;) tended to detect supramodal semantic areas.</p>
                <p>
                    <bold>Conclusions:</bold> This minor finding indicates that in some cases, seemingly poor data may deeply and systematically conceal information that is significant and worthwhile. It may have potential for shedding new light on in the controversy pertaining to cognitive semantics, which is divided into modality-biased (embodied) and amodal symbol theories.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>fMRI</kwd>
                <kwd>MVPA</kwd>
                <kwd>feature selection</kwd>
                <kwd>individual variability</kwd>
                <kwd>semantics</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>It is widely acknowledged that despite some challenges in multi-voxel pattern analysis (MVPA), the issue of individual variability, raised as a penalty to classification accuracy in cross-subject modelling, is challenging to overcome, particularly when targeting concepts and meanings conveyed by language
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>
                </sup>. Admittedly, the precision rates in MVPA could be mostly uniform for experiments successfully performed at the individual first level, as in the case of the classically recognized 
                <italic toggle="yes">Science</italic> article authored by T. Mitchell and his group (
                <italic toggle="yes">Predicting Human Brain Activity Associated with the Meanings of Nouns</italic>)
                <sup>
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. In their study, distributed brain activation patterns were observed in nine subjects conceptualizing 60 concrete nouns in an fMRI scanner, and these neural patterns were regressed on a co-occurrence probability in a text corpus between each of these fMRI nouns and semantic features (25 basic verbs). The highly significant prediction accuracy that they obtained at the subject level was associated with a pattern separability built on a set of informative voxels as features, which are distributed across numerous brain areas and differ across subjects. The 
                <italic toggle="yes">Science</italic> study and other computational neurolinguistic reports
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup> could generate classifiers with high precision (owing to the L2-regularization technique that obliterates individual variability) and draw plausible semantic maps in the individual brain.</p>
            <p>However, functionality at work in the individual brain remains to be specified further beyond unanimously acceptable modelling results. In this study, an alternative view is put forward to uncover systematicity and provide typology in individual variability through a reanalysis of the open data used in the Mitchell 
                <italic toggle="yes">et al</italic>.&#x2019;s 
                <italic toggle="yes">Science</italic> study. Several previous studies have reported that despite the almost invariably accurate performance of the subjects in conceptualization tasks, a fundamental difference is seen in the magnitude of how the information on the feature voxels is dispersive based on their anatomical locations
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>,
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. Unquestionably, the experimental paradigm developed by Mitchell 
                <italic toggle="yes">et al</italic>. hinged on modality specific factors, which promoted distributiveness of semantic processing systems. Their stimulus set, which used captioned drawings with considerable visual effects and concrete nouns with implications of some motion/perception, rendered the experiment sensitive to embodied cognition
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>
                </sup>. The attribute generation task, which consisted of thinking about the properties of the object, could allow free association and perceptual simulation
                <sup>
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. Yet, even without accounting for the modality specific factors, there remains some debate pertaining to the supramodal semantic centers in general as to whether the left temporal pole and anterior temporal gyrus (hub and spoke model)
                <sup>
                    <xref ref-type="bibr" rid="ref-10">10</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-11">11</xref>
                </sup> or the left middle temporal gyrus and the left angular gyrus (high level convergence model)
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-13">13</xref>
                </sup> are nodal for the loci of a genuinely semantic process. The primary goal of the present study was to determine whether such topology of semantic processing can be elucidated through a typology of fMRI subjects and to examine how that typology is determined by the subjects&#x2019; hidden neural responses characteristic to the selection of the most informative voxels.</p>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <p>The datasets were nine .mat files corresponding to the nine subjects (P1&#x2013;P9), downloaded from the website of Carnegie Mellon University. A &#x2018;.mat&#x2019; file was created (by using 
                <ext-link ext-link-type="uri" xlink:href="https://www.mathworks.com/products/matlab.html">MATLAB</ext-link> R2015a) from each subject&#x2019;s data, called 'runByVoxByNouns-P&lt;number&gt;.mat,' as a three-dimensional array corresponding to x: runs (six repeated presentations) by y: voxels by z: words (60 fMRI nouns). This procedure facilitated the computation of informative voxel locations identified by different feature-selection methods, which were the F values of ANOVA to measure and evaluate the mean value across the items repeatedly presented in a learning set and the Stability scores to distinguish voxels that exhibited consistently similar activation patterns to the items for machine learning
                <sup>
                    <xref ref-type="bibr" rid="ref-14">14</xref>
                </sup>. Mitchell 
                <italic toggle="yes">et al.</italic> adopted the latter method to select the top 500 voxels, which involves computing the Pearson's correlation coefficient of the activation vectors for the stimulus nouns over 15 (=
                <sub>6</sub>P
                <sub>2</sub>) pairs of fMRI presentation runs repeated 6 times. They computed the average pairwise correlation for each voxel over all pairs of rows in the matrix composed of six presentation runs by 58 nouns (reserving two nouns for testing). In this study, cross-validation was not performed except for computing the modeling accuracy for each subject using the ordinary least square method (OLS) without L2-regularization. The top 500 voxels were selected from the overall runs by the ANOVA and the Stability scores, and the number of the voxels not shared by the two selection results (subtraction operation for the two sets, i.e., type 1: ANOVA set &#x2013; Stability set and type 2: Stability set &#x2013; ANOVA set) was counted as &#x201c;divergence&#x201d; for each subject, as shown in 
                <xref ref-type="table" rid="T1">Table 1</xref>. The voxel-wise ranks in the two selection results were compared with each other with Spearman&#x2019;s rank correlation coefficient and the subject-wise 
                <italic toggle="yes">rho</italic> and the corresponding 
                <italic toggle="yes">p</italic> values were computed. The ANOVA and Stability feature-ranking data were all mapped to anatomical regions according to the automated anatomical labeling (AAL) atlas
                <sup>
                    <xref ref-type="bibr" rid="ref-15">15</xref>
                </sup>.</p>
            <table-wrap id="T1" orientation="portrait" position="anchor">
                <label>Table 1. </label>
                <caption>
                    <title>Details of the data on the per-subject top 500 feature voxels.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="left" colspan="1" rowspan="1">Subjects</th>
                            <th align="left" colspan="1" rowspan="1">RHO</th>
                            <th align="left" colspan="1" rowspan="1">P value</th>
                            <th align="left" colspan="1" rowspan="1">divergence</th>
                            <th align="left" colspan="1" rowspan="1">Mean ANOVA</th>
                            <th align="left" colspan="1" rowspan="1">Mean Stability</th>
                            <th align="left" colspan="1" rowspan="1">OLS</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P1</td>
                            <td align="right" colspan="1" rowspan="1">0.396</td>
                            <td align="right" colspan="1" rowspan="1">0</td>
                            <td align="right" colspan="1" rowspan="1">13</td>
                            <td align="right" colspan="1" rowspan="1">3.83</td>
                            <td align="right" colspan="1" rowspan="1">4.72</td>
                            <td align="right" colspan="1" rowspan="1">0.82</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P2</td>
                            <td align="right" colspan="1" rowspan="1">0.460</td>
                            <td align="right" colspan="1" rowspan="1">0</td>
                            <td align="right" colspan="1" rowspan="1">36</td>
                            <td align="right" colspan="1" rowspan="1">2.54</td>
                            <td align="right" colspan="1" rowspan="1">2.98</td>
                            <td align="right" colspan="1" rowspan="1">0.78</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P3</td>
                            <td align="right" colspan="1" rowspan="1">0.243</td>
                            <td align="right" colspan="1" rowspan="1">4.1E-08</td>
                            <td align="right" colspan="1" rowspan="1">21</td>
                            <td align="right" colspan="1" rowspan="1">2.32</td>
                            <td align="right" colspan="1" rowspan="1">2.67</td>
                            <td align="right" colspan="1" rowspan="1">0.78</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P4</td>
                            <td align="right" colspan="1" rowspan="1">0.242</td>
                            <td align="right" colspan="1" rowspan="1">4.5E-08</td>
                            <td align="right" colspan="1" rowspan="1">27</td>
                            <td align="right" colspan="1" rowspan="1">2.45</td>
                            <td align="right" colspan="1" rowspan="1">2.90</td>
                            <td align="right" colspan="1" rowspan="1">0.78</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P5</td>
                            <td align="right" colspan="1" rowspan="1">0.141</td>
                            <td align="right" colspan="1" rowspan="1">0.002</td>
                            <td align="right" colspan="1" rowspan="1">82</td>
                            <td align="right" colspan="1" rowspan="1">1.79</td>
                            <td align="right" colspan="1" rowspan="1">1.81</td>
                            <td align="right" colspan="1" rowspan="1">0.75</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P6</td>
                            <td align="right" colspan="1" rowspan="1">-0.022</td>
                            <td align="right" colspan="1" rowspan="1">0.628</td>
                            <td align="right" colspan="1" rowspan="1">183</td>
                            <td align="right" colspan="1" rowspan="1">1.75</td>
                            <td align="right" colspan="1" rowspan="1">1.69</td>
                            <td align="right" colspan="1" rowspan="1">0.64</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P7</td>
                            <td align="right" colspan="1" rowspan="1">0.392</td>
                            <td align="right" colspan="1" rowspan="1">0</td>
                            <td align="right" colspan="1" rowspan="1">59</td>
                            <td align="right" colspan="1" rowspan="1">1.79</td>
                            <td align="right" colspan="1" rowspan="1">1.76</td>
                            <td align="right" colspan="1" rowspan="1">0.71</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P8</td>
                            <td align="right" colspan="1" rowspan="1">0.023</td>
                            <td align="right" colspan="1" rowspan="1">0.607</td>
                            <td align="right" colspan="1" rowspan="1">146</td>
                            <td align="right" colspan="1" rowspan="1">1.62</td>
                            <td align="right" colspan="1" rowspan="1">1.50</td>
                            <td align="right" colspan="1" rowspan="1">0.6</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1">P9</td>
                            <td align="right" colspan="1" rowspan="1">-0.028</td>
                            <td align="right" colspan="1" rowspan="1">0.533</td>
                            <td align="right" colspan="1" rowspan="1">124</td>
                            <td align="right" colspan="1" rowspan="1">1.66</td>
                            <td align="right" colspan="1" rowspan="1">1.59</td>
                            <td align="right" colspan="1" rowspan="1">0.65</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p>The top 500 voxels were selected by the ANOVA and the Stability and the modelling accuracy based on the ordinary least square method (OLS) without adjustment of L2-regularization. The subject-wise &#x2018;
                            <italic toggle="yes">rho&#x2019;</italic> and the corresponding 
                            <italic toggle="yes">p</italic> values represent Spearman&#x2019;s rank correlation coefficient between the voxel-wise ranks in the two feature selection results. &#x2018;Divergence&#x2019; implies the number of the selected voxels extracted by the subtraction operation of ANOVA set &#x2013; Stability set or Stability set &#x2013; ANOVA set.</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
        </sec>
        <sec sec-type="results">
            <title>Results</title>
            <p>The raw modelling accuracy, based on the ordinary least square methods (OLS) without L2-regularization, decayed with the magnitude of "divergence" between the ANOVA and the Stability score and with the decrease in rank similarity between the voxels selected by each method (Table 1). Admittedly, good modelling accuracy is associated with high F values and Stability scores for the selected voxels, as is seen in P1 eliciting the best precision by a wide margin and the next best group of P2&#x2013;P4. However, there was no mean difference in feature scores among the subjects of the middle group, P5, P6, and P7, although P5 and P7 exhibited significant Spearman&#x2019;s rank correlation coefficients, divergence less than 100, and OLS precision higher than 70%, while none of these conditions was true for P6. When visualizing the score distributions of the top 500 voxels with a notched box plot, it is apparent that the poor-performance group (P6, P8, and P9) was characterized by narrowness of the boxes and the low upper whiskers (
                <xref ref-type="fig" rid="f1">Figure 1</xref>) and dispersiveness of the voxel-wise ranks in the two selection results (
                <xref ref-type="fig" rid="f2">Figure 2</xref>).</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Notched box plot for the score distributions of the top 500 voxels.</title>
                    <p>The voxels were selected by the ANOVA (above) and the Stability score (below). The horizontal axis corresponds to the numbered participants. This figure was depicted using the MATLAB function of &#x2018;boxplot.&#x2019; Data points exceeding the whiskers are displayed using +. The singularity of Participant 1 is conspicuous with the best scores by far, while the typology of the other participants was easily recognized classifying them into two groups (fair: P2, P3, and P4; poor: P5&#x2013;P9). However, a finer-grained observation allows us to stress the narrowness of the boxes and the low upper whiskers for P6, P7, and P9 and bundle them as a small subgroup of interest.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/15871/84fc73ac-55d1-4e87-bf80-d1cfe2c09323_figure1.gif"/>
            </fig>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Per-subject scatter plots of the ranks of the top 500 voxels.</title>
                    <p>The residuals to the regression line of y=x represent how closer or farther the two kinds of ranks of the selected voxels. The dots right to the red vertical line (y = 500) represent the voxels (type 1) selected by the ANOVA but not by the Stability score as the top 500. The dots over the red horizontal line (x = 500) correspond to the voxels (type 2) selected by the Stability score but not by the ANOVA under the same criteria. Irregularity in distribution is found in P6, P8, and P9.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/15871/84fc73ac-55d1-4e87-bf80-d1cfe2c09323_figure2.gif"/>
            </fig>
            <supplementary-material id="DS0" orientation="portrait" position="float" xlink:href="https://f1000researchdata.s3.amazonaws.com/datasets/14584/2ec1963a-7d35-4c7a-91dc-6c63ec4d46dc_Dataset_1.zip">
                <label>Reanalysis of Mitchell 
                    <italic toggle="yes">et al.</italic> data</label>
            </supplementary-material>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>Our results support the notion that particular types of individuals differ markedly in their way of recruiting voxels with respect to different feature selection methods, i.e., Stability scores and F values of ANOVA. The Stability scores examine the extent to which each voxel reacted to the same stimulus across runs in a constant manner; therefore, it is the &#x201c;identity&#x201d; of an object that is emphasized by this index as invariable through repetition. Conversely, the F values of ANOVA pertain to the magnitude of between-group variance across the responses to the 60 nouns with respect to the within-group variance across the 6 presentations of each individual noun; therefore, the &#x201c;difference&#x201d; is likely to be captured by that index although it should be inextricably linked with the &#x201c;identity&#x201d; side. In consequence, regardless of the feature selection method, mostly the same voxels with a similar top 500 ranking order could be selected from the brains of P1&#x2013;P5 and P7, but the remaining subjects (P6, P8, and P9) showed important divergence from the list of the 500 important voxels selected by the two methods. The mean index values for the top voxels were significantly larger in the former subjects than the latter ones for each method; the difference in raw classification accuracy without the regularization effect was conspicuous between these subject groups. However, an in-depth analysis revealed some questions to be delineated, since P5 and P7 may be treated equally as members of an interesting subgroup in that, despite the highly significant rank correlation for the selected voxels, the mean values were relatively low and not significantly different from those of P6 in the poor-performance group.</p>
            <p>When tapping into the anatomical regions from which feature voxels were selected, the most intriguing property was that high precision in modelling was guaranteed rather by extra-linguistic regions. It is noteworthy that in P1 (recording 82% as classification accuracy by the OLS with no regularization), the majority of the top 487 informative voxels shared by the Stability score and the ANOVA were found in the visual areas of the temporal and occipital lobes and several in the frontal and parietal lobes. Differently from all the other subjects, the left inferior frontal gyrus, pars triangularis ("Frontal_Inf_Tri_L"), and the left precuneus ("Precuneus_L"), frequently considered as involved in executive functions of language activity, were not recorded in the overlapping selected voxel areas of P1. When focusing on the poor-performance subject group (P6, P8, and P9), which exhibited a large divergence (larger than 1 standard deviation from the mean) between the voxel selections by the two methods, it appeared that the modality-specific areas were likely to be monitored by the Stability score (indexing &#x201c;identity&#x201d;), and that the ANOVA (emphasizing &#x201c;difference&#x201d;) tended to detect supramodal semantic areas. The voxels type 1 (selected by the ANOVA but not by the Stability score as the top 500) and type 2 (selected by the Stability score but not by the ANOVA under the same criteria) voxels were mostly extracted from different anatomical regions. The frequency distribution tables (
                <xref ref-type="fig" rid="f3">Figure 3</xref>) represent the number of type 1 and type 2 voxels selected from P6, P8, and P9 and attributed to each anatomical area in the AAL brain atlas. The ANOVA highlighted as locations of type 1 voxels, some areas for amodal or supramodal semantic processing, especially the left middle temporal gyrus (&#x201c;Temporal_Mid_L&#x201d;) which was the most populous by far in this category. In contrast, the Stability score tended to introduce bias to the vision-related areas, notably the left middle occipital gyrus (&#x201c;Occipital_Mid_L&#x201d;), which may reflect stimulus modality or perceptual symbols in embodied cognition.</p>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <title>Frequency tables of the informative voxels extracted from the poor-performance subjects.</title>
                    <p>The voxels were classified into type 1 (above, ANOVA subtracted from the Stability score) and type 2 (below, Stability score subtracted from the ANOVA) and attributed to each anatomical area in the AAL brain atlas (the voxels labelled 'Not_Found' were removed from the lists). The type 1 voxels tend to belong to the supramodal semantic regions (such as &#x201c;Temporal_Mid_L&#x201d;), whereas the type 2 ones are characterized by the dominance of the visual area (such as &#x201c;Occipital_Mid_L&#x201d;).</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/15871/84fc73ac-55d1-4e87-bf80-d1cfe2c09323_figure3.gif"/>
            </fig>
            <p>This divergence allows us to shed a new light on a traditionally controversial subject in neural semantics; where is the border that separates the brain regions selective to purely conceptual functions and sensory-driven, modality-dominant, so extrinsic to meaning processing? The compatibility of the Stability score with the perceptual modalities may suggest with the embodiment view (to which Mitchell 
                <italic toggle="yes">et al</italic>. also referred for the neural signature of the verb &#x201c;eat&#x201d;) that the &#x201c;identification&#x201d; of a concept is materially founded upon a sensory-perceptual system and real-life experience with its instances of referent (or stimuli) to shape its cognitively grounded symbols. However, the voxel information brought by the ANOVA enables us to propose an alternative view for the discrimination power in language, having an affinity for the amodal (not to say disembodied) symbol theory. Descended from the school of Saussure, this theory (often relying on lexical co-occurrence information from language corpora as in the case of the 
                <italic toggle="yes">Science</italic> study) postulates that the value of a symbol (or a linguistic sign) is not derived from its intrinsic sense but from language itself as a computability system of &#x201c;difference.&#x201d; It is quite intriguing that the reanalysis of the 
                <italic toggle="yes">Science</italic> data assessed, through the variability of subjects performing a language task, a salient discrepancy between the brain regions informative of manifold essence in semantic processing. Indeed, we are not yet in a position to argue these philosophically opposite views only through a succinct review such as this report. However, at least we may conclude here that such a fundamental issue was, quite interestingly, readdressed by reanalyzing the data from a subject group that elicited inconsistency to the feature selection methods and relatively low precision rates to fMRI machine learning classifiers.</p>
        </sec>
        <sec>
            <title>Data availability</title>
            <p>The data referenced by this article are under copyright with the following copyright statement: Copyright: &#x00ef;&#x00bf;&#x00bd; 2018 Akama H</p>
            <p>Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
                <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/"/>
            </p>
            <p>The dataset of Mitchell 
                <italic toggle="yes">et al</italic>. was downloaded from</p>
            <p>
                <ext-link ext-link-type="uri" xlink:href="http://www.cs.cmu.edu/afs/cs/project/theo-73/www/science2008/data.html">http://www.cs.cmu.edu/afs/cs/project/theo-73/www/science2008/data.html</ext-link>
            </p>
            <p>Dataset 1: Reanalysis of Mitchell 
                <italic toggle="yes">et al</italic>. data. 
                <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.5256/f1000research.14584.d201767">10.5256/f1000research.14584.d201767</ext-link>
                <sup>
                    <xref ref-type="bibr" rid="ref-16">16</xref>
                </sup>
            </p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgement</title>
            <p>The author would like to thank Editage (
                <ext-link ext-link-type="uri" xlink:href="http://www.editage.jp">www.editage.jp</ext-link>) for English language editing.</p>
        </ack>
        <ref-list>
            <ref id="ref-1">
                <label>1</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Akama</surname>
                            <given-names>H</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Murphy</surname>
                            <given-names>B</given-names>
                        </name>
</person-group>:
                    <article-title>Emerging Methods for Conceptual Modelling in Neuroimaging.</article-title>
                    <source>

                        <italic toggle="yes">Behaviormetrika.</italic>
</source>Springer.<year>2016</year>;<volume>44</volume>(<issue>1</issue>):<fpage>117</fpage>&#x2013;<lpage>133</lpage>.
                    <pub-id pub-id-type="doi">10.1007/s41237-016-0009-1</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-2">
                <label>2</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Mitchell</surname>
                            <given-names>TM</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Shinkareva</surname>
                            <given-names>SV</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Carlson</surname>
                            <given-names>A</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Predicting human brain activity associated with the meanings of nouns.</article-title>
                    <source>

                        <italic toggle="yes">Science.</italic>
</source>
                    <year>2008</year>;<volume>320</volume>(<issue>5880</issue>):<fpage>1191</fpage>&#x2013;<lpage>5</lpage>.
                    <pub-id pub-id-type="pmid">18511683</pub-id>
                    <pub-id pub-id-type="doi">10.1126/science.1152876</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-3">
                <label>3</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Bullinaria</surname>
                            <given-names>JA</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Levy</surname>
                            <given-names>JP</given-names>
                        </name>
</person-group>:
                    <article-title>Limiting factors for mapping corpus-based semantic representations to brain activity.</article-title>
                    <source>

                        <italic toggle="yes">PLoS One.</italic>
</source>
                    <year>2013</year>;<volume>8</volume>(<issue>3</issue>):<fpage>e57191</fpage>.
                    <pub-id pub-id-type="pmid">23526937</pub-id>
                    <pub-id pub-id-type="doi">10.1371/journal.pone.0057191</pub-id>
                    <pub-id pub-id-type="pmcid">3602437</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-4">
                <label>4</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Anderson</surname>
                            <given-names>AJ</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Binder</surname>
                            <given-names>JR</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Fernandino</surname>
                            <given-names>L</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Predicting Neural Activity Patterns Associated with Sentences Using a Neurobiologically Motivated Model of Semantic Representation.</article-title>
                    <source>

                        <italic toggle="yes">Cereb Cortex.</italic>
</source>
                    <year>2017</year>;<volume>27</volume>(<issue>9</issue>):<fpage>4379</fpage>&#x2013;<lpage>4395</lpage>.
                    <pub-id pub-id-type="pmid">27522069</pub-id>
                    <pub-id pub-id-type="doi">10.1093/cercor/bhw240</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-5">
                <label>5</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Pereira</surname>
                            <given-names>F</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Detre</surname>
                            <given-names>G</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Botvinick</surname>
                            <given-names>M</given-names>
                        </name>
</person-group>:
                    <article-title>Generating text from functional brain images.</article-title>
                    <source>

                        <italic toggle="yes">Front Hum Neurosci.</italic>
</source>
                    <year>2011</year>;<volume>5</volume>:<fpage>72</fpage>.
                    <pub-id pub-id-type="pmid">21927602</pub-id>
                    <pub-id pub-id-type="doi">10.3389/fnhum.2011.00072</pub-id>
                    <pub-id pub-id-type="pmcid">3159951</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-6">
                <label>6</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Akama</surname>
                            <given-names>H</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Miyake</surname>
                            <given-names>M</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Jung</surname>
                            <given-names>J</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Using Graph Components Derived from an Associative Concept Dictionary to Predict fMRI Neural Activation Patterns that Represent the Meaning of Nouns.</article-title>
                    <source>

                        <italic toggle="yes">PLoS One.</italic>
</source>
                    <year>2015</year>;<volume>10</volume>(<issue>4</issue>):<fpage>e0125725</fpage>.
                    <pub-id pub-id-type="pmid">25928363</pub-id>
                    <pub-id pub-id-type="doi">10.1371/journal.pone.0125725</pub-id>
                    <pub-id pub-id-type="pmcid">4482269</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-7">
                <label>7</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Huth</surname>
                            <given-names>AG</given-names>
                        </name>

                        <name name-style="western">
                            <surname>de Heer</surname>
                            <given-names>WA</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Griffiths</surname>
                            <given-names>TL</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Natural speech reveals the semantic maps that tile human cerebral cortex.</article-title>
                    <source>

                        <italic toggle="yes">Nature.</italic>
</source>
                    <year>2017</year>;<volume>532</volume>(<issue>7600</issue>):<fpage>453</fpage>&#x2013;<lpage>8</lpage>.
                    <pub-id pub-id-type="pmid">27121839</pub-id>
                    <pub-id pub-id-type="doi">10.1038/nature17637</pub-id>
                    <pub-id pub-id-type="pmcid">4852309</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-8">
                <label>8</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Willems</surname>
                            <given-names>RM</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Casasanto</surname>
                            <given-names>D</given-names>
                        </name>
</person-group>:
                    <article-title>Flexibility in embodied language understanding.</article-title>
                    <source>

                        <italic toggle="yes">Front Psychol.</italic>
</source>
                    <year>2011</year>;<volume>2</volume>:<fpage>116</fpage>.
                    <pub-id pub-id-type="pmid">21779264</pub-id>
                    <pub-id pub-id-type="doi">10.3389/fpsyg.2011.00116</pub-id>
                    <pub-id pub-id-type="pmcid">3132681</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-9">
                <label>9</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Engelen</surname>
                            <given-names>JA</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Bouwmeester</surname>
                            <given-names>S</given-names>
                        </name>

                        <name name-style="western">
                            <surname>de Bruin</surname>
                            <given-names>AB</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Perceptual simulation in developing language comprehension.</article-title>
                    <source>

                        <italic toggle="yes">J Exp Child Psychol.</italic>
</source>
                    <year>2011</year>;<volume>110</volume>(<issue>4</issue>):<fpage>659</fpage>&#x2013;<lpage>75</lpage>.
                    <pub-id pub-id-type="pmid">21803371</pub-id>
                    <pub-id pub-id-type="doi">10.1016/j.jecp.2011.06.009</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-10">
                <label>10</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Patterson</surname>
                            <given-names>K</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Nestor</surname>
                            <given-names>PJ</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Rogers</surname>
                            <given-names>TT</given-names>
                        </name>
</person-group>:
                    <article-title>Where do you know what you know? The representation of semantic knowledge in the human brain.</article-title>
                    <source>

                        <italic toggle="yes">Nat Rev Neurosci.</italic>
</source>
                    <year>2007</year>;<volume>8</volume>(<issue>12</issue>):<fpage>976</fpage>&#x2013;<lpage>87</lpage>.
                    <pub-id pub-id-type="pmid">18026167</pub-id>
                    <pub-id pub-id-type="doi">10.1038/nrn2277</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-11">
                <label>11</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Rice</surname>
                            <given-names>GE</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Lambon Ralph</surname>
                            <given-names>MA</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Hoffman</surname>
                            <given-names>P</given-names>
                        </name>
</person-group>:
                    <article-title>The Roles of Left Versus Right Anterior Temporal Lobes in Conceptual Knowledge: An ALE Meta-analysis of 97 Functional Neuroimaging Studies.</article-title>
                    <source>

                        <italic toggle="yes">Cereb Cortex.</italic>
</source>
                    <year>2015</year>;<volume>25</volume>(<issue>11</issue>):<fpage>4374</fpage>&#x2013;<lpage>91</lpage>.
                    <pub-id pub-id-type="pmid">25771223</pub-id>
                    <pub-id pub-id-type="doi">10.1093/cercor/bhv024</pub-id>
                    <pub-id pub-id-type="pmcid">4816787</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-12">
                <label>12</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Binder</surname>
                            <given-names>JR</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Desai</surname>
                            <given-names>RH</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Graves</surname>
                            <given-names>WW</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Where is the semantic system? A critical review and meta-analysis of 120 functional neuroimaging studies.</article-title>
                    <source>

                        <italic toggle="yes">Cereb Cortex.</italic>
</source>
                    <year>2009</year>;<volume>19</volume>(<issue>12</issue>):<fpage>2767</fpage>&#x2013;<lpage>96</lpage>.
                    <pub-id pub-id-type="pmid">19329570</pub-id>
                    <pub-id pub-id-type="doi">10.1093/cercor/bhp055</pub-id>
                    <pub-id pub-id-type="pmcid">2774390</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-13">
                <label>13</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Binder</surname>
                            <given-names>JR</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Desai</surname>
                            <given-names>RH</given-names>
                        </name>
</person-group>:
                    <article-title>The neurobiology of semantic memory.</article-title>
                    <source>

                        <italic toggle="yes">Trends Cogn Sci.</italic>
</source>
                    <year>2011</year>;<volume>15</volume>(<issue>11</issue>):<fpage>527</fpage>&#x2013;<lpage>36</lpage>.
                    <pub-id pub-id-type="pmid">22001867</pub-id>
                    <pub-id pub-id-type="doi">10.1016/j.tics.2011.10.001</pub-id>
                    <pub-id pub-id-type="pmcid">3350748</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-14">
                <label>14</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Pereira</surname>
                            <given-names>F</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Mitchell</surname>
                            <given-names>T</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Botvinick</surname>
                            <given-names>M</given-names>
                        </name>
</person-group>:
                    <article-title>Machine learning classifiers and fMRI: a tutorial overview.</article-title>
                    <source>

                        <italic toggle="yes">NeuroImage.</italic>
</source>
                    <year>2009</year>;<volume>45</volume>(<issue>1 Suppl</issue>):<fpage>S199</fpage>&#x2013;<lpage>209</lpage>.
                    <pub-id pub-id-type="pmid">19070668</pub-id>
                    <pub-id pub-id-type="doi">10.1016/j.neuroimage.2008.11.007</pub-id>
                    <pub-id pub-id-type="pmcid">2892746</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-15">
                <label>15</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Tzourio-Mazoyer</surname>
                            <given-names>N</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Landeau</surname>
                            <given-names>B</given-names>
                        </name>

                        <name name-style="western">
                            <surname>Papathanassiou</surname>
                            <given-names>D</given-names>
                        </name>

                        <etal/>
</person-group>:
                    <article-title>Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.</article-title>
                    <source>

                        <italic toggle="yes">NeuroImage.</italic>
</source>
                    <year>2002</year>;<volume>15</volume>(<issue>1</issue>):<fpage>273</fpage>&#x2013;<lpage>89</lpage>.
                    <pub-id pub-id-type="pmid">11771995</pub-id>
                    <pub-id pub-id-type="doi">10.1006/nimg.2001.0978</pub-id>
                </mixed-citation>
            </ref>
            <ref id="ref-16">
                <label>16</label>
                <mixed-citation publication-type="journal">
                    <person-group person-group-type="author">

                        <name name-style="western">
                            <surname>Akama</surname>
                            <given-names>H</given-names>
                        </name>
</person-group>:
                    <article-title>Dataset 1 in: Individual typological differences in a neurally distributed semantic processing system: Revisiting the Science article by Mitchell 
                        <italic toggle="yes">et al.</italic> on computational neurolinguistics.</article-title>
                    <source>

                        <italic toggle="yes">F1000Research.</italic>
</source>
                    <year>2018</year>.
                    <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.5256/f1000research.14584.d201767">Data Source</ext-link>
                </mixed-citation>
            </ref>
        </ref-list>
    </back>
    <sub-article article-type="reviewer-report" id="report33424">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.15871.r33424</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Hsu</surname>
                        <given-names>Chiu-Hsieh</given-names>
                    </name>
                    <xref ref-type="aff" rid="r33424a1">1</xref>
                    <role>Referee</role>
                </contrib>
                <aff id="r33424a1">
                    <label>1</label>Institute of Linguistics, Academia Sinica, Taipei, Taiwan</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>18</day>
                <month>7</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Hsu CH</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport33424" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.14584.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The manuscript is a reanalysis of the study of Mitchell et al. (2008). The author claims that using different&#x00a0;feature selection methods can help to identify areas that are&#x00a0;functional distinctive in individual level.&#x00a0;The finding of the presented study provides substantial implication to studies that focus on how&#x00a0;neural activation encoding the semantic content. I only have few minor comments. 
                <list list-type="order">
                    <list-item>
                        <p>(on page 3) please provide details of the cross-validation method of the OLS analysis.</p>
                    </list-item>
                    <list-item>
                        <p>In Discussion, the author describe about the distribution of "type 1 voxels" and "type 2 voxels" in some participants. I wonder if the results in&#x00a0;the rest of the participants show a similar pattern?</p>
                    </list-item>
                    <list-item>
                        <p>I would like to suggest that the author can provide figures or tables that show the distribution of three types of voxels (type 1, type 2, and convergent voxels) of each participant. This&#x00a0;information would help the reader to see the consistency/divergence&#x00a0;of encoding models in each participant.</p>
                    </list-item>
                </list>
            </p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
    </sub-article>
</article>
