<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.14970.2</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Research Article</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>An opportunity for clinical pharmacology trained physicians to improve patient drug safety: A retrospective analysis of adverse drug reactions in teenagers</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 2; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Eugene</surname>
                        <given-names>Andy R.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Software</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-2512-5454</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Eugene</surname>
                        <given-names>Beata</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Pharmacogenomics, Bernard J. Dunn School of Pharmacy, Inova Center for Personalized Health, Shenandoah University, Fairfax, VA, 22031, USA</aff>
                <aff id="a2">
                    <label>2</label>Neurophysiology Unit, Department of Psychiatry, Medical University of Lublin, Aleje Rac&#x0142;awickie 1, 20-059 Lublin, Poland</aff>
                <aff id="a3">
                    <label>3</label>Marie-Curie Sklodowska University, Lublin, Poland</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:aeugene@su.edu">aeugene@su.edu</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>14</day>
                <month>8</month>
                <year>2018</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2018</year>
            </pub-date>
            <volume>7</volume>
            <elocation-id>677</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>8</day>
                    <month>8</month>
                    <year>2018</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Eugene AR and Eugene B</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/7-677/pdf"/>
            <abstract>
                <p>
                    <bold>Background:</bold> Adverse drug reactions (ADRs) are a major cause of hospital admissions, prolonged hospital stays, morbidity, and drug-related mortality. In this study, we sought to identify the most frequently reported medications and associated side effects in adolescent-aged patients in an effort to prioritize clinical pharmacology consultation efforts for hospitals seeking to improve patient safety.</p>
                <p>
                    <bold>Methods:</bold> Quarterly reported data were obtained from the United States Food and Drug Administration Adverse Events Reporting System (FAERS) from the third quarter of 2014 and ending in the third quarter of 2017. We then used the GeneCards database to map the pharmacogenomic biomarkers associated with the most reported FAERS drugs. Data homogenization and statistics analysis were all conducted in R for statistical programming.</p>
                <p>
                    <bold>Results:</bold> We identified risperidone (10.64%) as the compound with the most reported ADRs from all reported cases. Males represented 90.1% of reported risperidone cases with gynecomastia being the most reported ADR. Ibuprofen OR=188 (95% CI, 105.0000 &#x2013; 335.000) and quetiapine fumarate OR=116 (95% CI, 48.4000 &#x2013; 278.000) were associated with the highest odds of completed suicide in teenagers. Ondansetron hydrochloride OR=7.12 (95% CI, 1.59 &#x2013; 31.9) resulted in the highest odds of pneumothorax. Lastly, olanzapine (8.96%) represented the compound with the most reported drug-drug interactions cases, while valproic acid OR=221 (95% CI, 93.9000 &#x2013; 522.000) was associated with the highest odds of drug-drug interactions.</p>
                <p>
                    <bold>Conclusion:</bold> Despite any data limitations, physicians prescribing risperidone in males should be aware of the high rates of adverse drug events and an alternative psychotropic should be considered in male patients. Further, patients with a history of pneumothorax or genetically predisposed to pneumothorax should be considered for an alternative antiemetic to ondansetron hydrochloride, due to increased odds associated with the drug and adverse event.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>adverse drug reactions</kwd>
                <kwd>pharmacogenomics</kwd>
                <kwd>psychiatry</kwd>
                <kwd>precision medicine</kwd>
                <kwd>pharmacogenomics</kwd>
                <kwd>consult</kwd>
                <kwd>mental health</kwd>
                <kwd>teenagers</kwd>
            </kwd-group>
            <funding-group>
                <funding-statement>The author(s) declared that no grants were involved in supporting this work.</funding-statement>
            </funding-group>
        </article-meta>
        <notes>
            <sec sec-type="version-changes">
                <label>Revised</label>
                <title>Amendments from Version 1</title>
                <p>In this version of our research article, we made the following updates: 
                    <list list-type="order">
                        <list-item>
                            <p>In the Methods section, we added a comment to specifically reflect&#x00a0;the numerical age group for adolescents being 12 &#x2013; 17 years-old.</p>
                        </list-item>
                        <list-item>
                            <p>We added 3 references of previously published papers that analyzed adverse drug reactions in pediatric-aged patients.</p>
                        </list-item>
                        <list-item>
                            <p>We added three sentences detailing the methodology using R for calculation of the odds-ratios within the statistics sub-section.</p>
                        </list-item>
                        <list-item>
                            <p>We added general information of&#x00a0;drug-gene interactions, drug-drug-interactions, and extrapolated drug-drug-gene using the&#x00a0;FDA&#x2019;s Table of Pharmacogenomic Biomarkers in Drug Labelling (
                                <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/Drugs/ScienceResearch/ucm572698.htm">https://www.fda.gov/Drugs/ScienceResearch/ucm572698.htm</ext-link>) and the FDA&#x2019;s Table of Substrates, Inhibitors and Inducers (
                                <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/drugs/developmentapprovalprocess/developmentresources/druginteractionslabeling/ucm093664.htm">https://www.fda.gov/drugs/developmentapprovalprocess/developmentresources/druginteractionslabeling/ucm093664.htm</ext-link>).</p>
                        </list-item>
                        <list-item>
                            <p>We commented on the&#x00a0;National Human Genomic Research Institute's initiative that establishes a Pharmacogenomics Work Group within the Inter-Society Coordinating Committee for Practitioner Education in Genomics to increase pharmacogenomic education resources as well as a comment to underscore the unmet clinical need to increase the number of clinical pharmacology trained physicians in the United States to facilitate Genomic Medicine.</p>
                        </list-item>
                        <list-item>
                            <p>We conducted analysis with&#x00a0;OpenVigil 2.1-MedDRA, an online tool developed by the Christian Albrecht University of Kiel, Germany to&#x00a0;confirm our findings showing an increased odds of pneumothorax with ondansetron.</p>
                        </list-item>
                        <list-item>
                            <p>We provided a clear pharmacokinetic-pharmacogenomic clinical example for risperidone using CYP2D6 covariate estimates from parameters published from a population pharmacokinetic study. I also included an examples of drug-drug-gene interactions with several strong CYP2D6 inhibitors referenced from the&#x00a0;FDA&#x2019;s Table of Substrates, Inhibitors and Inducers.</p>
                        </list-item>
                        <list-item>
                            <p>We&#x00a0;added a clearer description of the&#x00a0;GeneCards score that is described in the Results.&#x00a0;</p>
                        </list-item>
                    </list>
                </p>
            </sec>
        </notes>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>When considering the aims of precision medicine, which has the underlying theme of maximizing therapeutic efficacy while minimizing adverse drug reactions, all physician and surgeon specialists serve an integral role in achieving the overall goal of this national endeavor (
                <xref ref-type="bibr" rid="ref-12">Manolio, 2016</xref>; 
                <xref ref-type="bibr" rid="ref-19">Rasmussen-Torvik 
                    <italic toggle="yes">et al.</italic>, 2014</xref>; 
                <xref ref-type="bibr" rid="ref-25">Weinshilboum &amp; Wang, 2017</xref>). Within medical specialties, clinical pharmacologists are vital for providing pharmacogenomics consultations to patients, to other specialists, and in academic medicine to support the widespread implementation of pharmacogenomics and personalized medicine (
                <xref ref-type="bibr" rid="ref-3">Borobia 
                    <italic toggle="yes">et al.</italic>, 2018</xref>; 
                <xref ref-type="bibr" rid="ref-15">Moore, 2001</xref>; 
                <xref ref-type="bibr" rid="ref-27">van der Wouden 
                    <italic toggle="yes">et al.</italic>, 2017</xref>). Further, there is a growing need to provide more genomic medicine training modules to physicians in non-academic medical centers and rural clinics to support patient care decisions that address pharmacogenomics (
                <xref ref-type="bibr" rid="ref-13">McCauley 
                    <italic toggle="yes">et al.</italic>, 2017</xref>). Within the United States, the American Board of Clinical Pharmacology (ABCP) accredits institutions that train clinical pharmacologists who consult on patient cases of drug-gene interactions (i.e. pharmacogenomics), drug-drug interactions (DDIs), drug-drug-gene interactions, toxicology cases, and the use of pharmacometric tools that provide Bayesian dosing support for therapeutic drug monitoring (TDM) (
                <xref ref-type="bibr" rid="ref-1">Aronson, 2012</xref>; 
                <xref ref-type="bibr" rid="ref-11">Lewis &amp; Nierenberg, 2007</xref>). However, when implementing hospital-based clinical pharmacology consultation units, aside from the established drug-gene guidelines, what is a reasonable approach for hospital pharmacologists to prioritize medications that are associated with the most reported adverse drug reactions that will improve hospital safety outcomes?</p>
            <p>It is well-known that thousands of adverse drug reactions resulting in hospitalizations, increased lengths of hospital stay, and complications in patient management occur every year (
                <xref ref-type="bibr" rid="ref-14">Montan&#x00e9; 
                    <italic toggle="yes">et al.</italic>, 2018</xref>; 
                <xref ref-type="bibr" rid="ref-21">Schmiedl 
                    <italic toggle="yes">et al.</italic>, 2014</xref>). However, an approach that systematically addresses the top medications associated with the most reported adverse drug events, leading to a prioritization method for hospital pharmacologists to improve medication safety, is lacking (
                <xref ref-type="bibr" rid="ref-5">Davies 
                    <italic toggle="yes">et al.</italic>, 2009</xref>; 
                <xref ref-type="bibr" rid="ref-22">Shepherd 
                    <italic toggle="yes">et al.</italic>, 2012</xref>). Several healthcare institutions in the United States have well established physician clinical pharmacology training programs, and integrate experiences into daily patient care, medical education, and research (
                <xref ref-type="bibr" rid="ref-11">Lewis &amp; Nierenberg, 2007</xref>). The University of Chicago Hospital, in conjunction with the Indiana Institute for Personalized Medicine at the Indiana University, offers a clinical pharmacology consultation service that conducts pharmacogenomic consults to low-income patients and provide thorough documentation of its process in a 2016 publication (
                <xref ref-type="bibr" rid="ref-6">Eadon 
                    <italic toggle="yes">et al.</italic>, 2016</xref>). Other ABCP-accredited institutions (e.g. Mayo Clinic, Johns Hopkins Hospital, Baylor College of Medicine, Cincinnati Children&#x2019;s Hospital, and more) are training and leading the U.S. with various pharmacogenomics implementation strategies into routine patient care (see 
                <ext-link ext-link-type="uri" xlink:href="http://abcp.net/">ABCP training programs</ext-link>).</p>
            <p>In European nations and other countries with national health systems, the intrinsic goal of keeping all healthcare-related costs to a minimum and hospital re-admissions rates to a low, while still maintaining high-quality patient care, medical doctors specializing in clinical pharmacology who provide personalize medicine services are the norm (
                <xref ref-type="bibr" rid="ref-3">Borobia 
                    <italic toggle="yes">et al.</italic>, 2018</xref>; 
                <xref ref-type="bibr" rid="ref-10">Jankovi&#x0107; 
                    <italic toggle="yes">et al.</italic>, 2016</xref>; 
                <xref ref-type="bibr" rid="ref-28">Zagorodnikova Goryachkina 
                    <italic toggle="yes">et al.</italic>, 2015</xref>). Contrastingly, the multi-payer model currently within U.S. hospitals, often preclude hospitals from absorbing the cost of a clinical pharmacologists who would translate pharmacogenetics guidelines into daily patient care.</p>
            <p>It is important to note that hospitals with clinical pharmacology training programs are often ranked among the top ranked by U.S. news and world reports, even though clinical pharmacology is not one of the specialties being assessed for survival, patient safety, other care-related outcomes, and expert opinion (
                <xref ref-type="bibr" rid="ref-8">Harder 
                    <italic toggle="yes">et al.</italic>, 2017</xref>). The service and commitment to the use of precision dosing in patient care, research, clinical pharmacology education, and pharmacogenomics implementation at these hospitals provide an overall compelling story. One of the most well recognized hospitals, globally, is the Karolinska Institutet in Stockholm, Sweden, due its awarding of the Nobel Prize in Physiology or Medicine. A recent article by the Karolinska Institutet discusses how the 50 year jubilee was recently celebrated in recognition of the establishment of their hospital&#x2019;s Department of Clinical Pharmacology (
                <xref ref-type="bibr" rid="ref-7">Eichelbaum 
                    <italic toggle="yes">et al.</italic>, 2018</xref>).</p>
            <p>In the recent jubilee article, the Karolinska Institutet&#x2019;s clinical pharmacologists detail the various established responsibilities of their clinical pharmacology services, which function as a division within the department of laboratory medicine today, and how they addressed this vital unmet clinical need within their medical center (
                <xref ref-type="bibr" rid="ref-7">Eichelbaum 
                    <italic toggle="yes">et al.</italic>, 2018</xref>). In the U.S., a National Provider Identifier taxonomy code for clinical pharmacology is well established as 208U00000X; however, hospitals and state medical boards have not worked with state legislative officials to create a bill enacting medical licensure (e.g. independent, collaborative, or institutional) specifically for medical school graduates who enter directly into clinical pharmacology training. Yet, adverse drug reactions continue to affect outcomes and patient safety metrics each year (
                <xref ref-type="bibr" rid="ref-4">Burkhart 
                    <italic toggle="yes">et al.</italic>, 2015</xref>; 
                <xref ref-type="bibr" rid="ref-14">Montan&#x00e9; 
                    <italic toggle="yes">et al.</italic>, 2018</xref>).</p>
            <p>It is important to realize that collaborative practice agreement laws between licensed physicians and pharmacists, physician assistants, and nurses are already in existence, but remains un-addressed for medical school graduates who choose only to specialize and train in clinical pharmacology. Therefore, if nothing is done, national implementation of precision medicine remains a challenge, due to not having enough trained medical doctors who focus on implementing pharmacogenomics into patient care and contribute to pharmacogenomics education (
                <xref ref-type="bibr" rid="ref-13">McCauley 
                    <italic toggle="yes">et al.</italic>, 2017</xref>; 
                <xref ref-type="bibr" rid="ref-20">Rosenman 
                    <italic toggle="yes">et al.</italic>, 2017</xref>).</p>
            <p>With this information as a background, the primary aim of this article is to determine the most frequently reported drugs and associated adverse drug reactions that are found within the FDA Adverse Events Reporting System (FAERS) that will aid in prioritizing efforts for clinical pharmacology consultation services. To do so, we will access publically available FAERS data and report reporting frequencies and reporting odd-ratios of cases in an adolescent patient age group to avoid polypharmacy, albeit not exclusively in all cases.</p>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <sec>
                <title>Data</title>
                <p>The United States Food and Drug Administration&#x2019;s (FDA) Adverse Events Reporting System (FAERS) quarterly reports were downloaded, with dates ranging from the third quarter of 2014 to the third quarter of 2017. The &#x2018;primaryid&#x2019; column, which represents a unique number of case sequence identifiers and manufacturer version number, were systematically linked as the primary field to other individual data files. Prior to our retrospective data analysis, we removed duplicate cases and selected reports classified from the adolescent (12 &#x2013; 17 years-old) age group alone. A source of bias in the FAERS quarterly files may be underreporting of drugs in particular people groups due to language. Institutional Review Board approval was not required due to the FAERS data being public de-identified patient cases.</p>
                <p>The following are the data tables for each quarter (i.e. Q1-Q4) of the year (i.e. yy in the files): patient demographic and administrative information (DEMOyyQ1-Q4), drug/biologic information (DRUGyyQ1-Q4), the Medical Dictionary for Regulatory Activities (MedDRA) terms of reported adverse events (REACyyQ1-Q4), patient outcomes (OUTCyyQ1-Q4), report sources (RPSRyyQ1-Q4), drug therapy start dates and end dates (THERyyQ1-Q4), and finally the MedDRA terms coded for the clinical indications (INDIyyQ1-Q4). Links to data used can be found in 
                    <xref ref-type="table" rid="T1">Table 1</xref>.</p>
                <table-wrap id="T1" orientation="portrait" position="anchor">
                    <label>Table 1. </label>
                    <caption>
                        <title>Data used in this study are referenced from the U.S. Food and Drug Administration&#x2019;s quarterly reported adverse events reporting system data.</title>
                    </caption>
                    <table content-type="article-table" frame="hsides">
                        <thead>
                            <tr>
                                <th align="center" colspan="1" rowspan="1" valign="top">Reporting time</th>
                                <th align="center" colspan="1" rowspan="1" valign="top">Quarterly file name</th>
                                <th align="center" colspan="1" rowspan="1" valign="top">File web address</th>
                            </tr>
                        </thead>
                        <tbody>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>July - September</bold>
                                    <break/>
                                    <bold>2017</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM590948.zip">FAERS_ASCII_2017q3</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM590948.zip">(ZIP - 42.1MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM590948.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM590948.zip">Surveillance/UCM590948.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>April - June 2017</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM578242.zip">FAERS_ASCII_2017q2</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM578242.zip">(ZIP - 41.3MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM578242.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM578242.zip">Surveillance/UCM578242.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>January - March</bold>
                                    <break/>
                                    <bold>2017</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM562290.zip">FAERS_ASCII_2017q1</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM562290.zip">(ZIP - 42.6MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM562290.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM562290.zip">Surveillance/AdverseDrugEffects/UCM562290.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>October -</bold>
                                    <break/>
                                    <bold>December 2016</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM546946.zip">FAERS ASCII 2016q4</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM546946.zip">(ZIP - 39.2MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM546946.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM546946.zip">Surveillance/UCM546946.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>July - September</bold>
                                    <break/>
                                    <bold>2016</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM534900.zip">FAERS ASCII 2016q3</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM534900.zip">(ZIP - 40.6MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM534900.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM534900.zip">Surveillance/AdverseDrugEffects/UCM534900.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>April - June 2016</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM534900.zip">FAERS ASCII 2016q2</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM534900.zip">(ZIP - 43.7MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM521951.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM521951.zip">Surveillance/UCM521951.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>January - March</bold>
                                    <break/>
                                    <bold>2016</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM521951.zip">FAERS ASCII 2016q1</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM521951.zip">(ZIP - 45.4MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM509489.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM509489.zip">Surveillance/UCM509489.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>October -</bold>
                                    <break/>
                                    <bold>December 2015</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM509489.zip">FAERS ASCII 2015q4</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM509489.zip">(ZIP - 39.7MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM492340.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/AdverseDrugEffects/UCM492340.zip">Surveillance/AdverseDrugEffects/UCM492340.zip</ext-link>
                                </td>
                            </tr>
                            <tr>
                                <td colspan="1" rowspan="1">
                                    <bold>July - September</bold>
                                    <break/>
                                    <bold>2015</bold>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM477190.zip">FAERS ASCII 2015q3</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM477190.zip">(ZIP - 44.7MB)</ext-link>
                                </td>
                                <td colspan="1" rowspan="1">
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM477190.zip">https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/</ext-link>
                                    <break/>
                                    <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Surveillance/UCM477190.zip">Surveillance/UCM477190.zip</ext-link>
                                </td>
                            </tr>
                        </tbody>
                    </table>
                </table-wrap>
            </sec>
            <sec>
                <title>Mapping of Drug-Gene Targets</title>
                <p>The primary and secondary molecular target mappings of the top FAERS reported drugs were obtained from the compounds listed in the 
                    <ext-link ext-link-type="uri" xlink:href="http://www.genecards.org/">GeneCards</ext-link> database. (
                    <xref ref-type="bibr" rid="ref-23">Stelzer 
                        <italic toggle="yes">et al.</italic>, 2016</xref>; 
                    <xref ref-type="bibr" rid="ref-26">Weizmann Institute of Science, 2016</xref>). GeneCards uses an Inferred Functionality Score that provides an objective number that indicates the knowledge level about the functionality of human genes relative to the drug queried in the database by comparing the drug with all possible genes. The final results are ranked according to a relevance score and reported in the results section of this article. In our analysis, we mapped the top ten genes using the GeneCards methodology, as has been previously reported (
                    <xref ref-type="bibr" rid="ref-23">Stelzer 
                        <italic toggle="yes">et al</italic>., 2016</xref>; 
                    <xref ref-type="bibr" rid="ref-26">Weizmann Institute of Science, 2016</xref>).</p>
            </sec>
            <sec>
                <title>Statistics</title>
                <p>All data homogenization and statistics were computed using 
                    <ext-link ext-link-type="uri" xlink:href="https://www.r-project.org/">R</ext-link> for Statistical Computing (version 3.3.2, Vienna, Austria) programming software (
                    <xref ref-type="bibr" rid="ref-18">R Core Team, 2015</xref>). The top 15 indications, adverse drug reactions, and drugs are reported for the adolescent age group. The frequency tables were calculated based on: (number of drugs or adverse effect events) / (number of patient records) = drug or adverse events frequency. The reporting odds-ratios (OR), that scans across the medications under test, for a particular reported adverse drug event, are calculated using &#x201c;Diarrhoea&#x201d; as the control preferred term while &#x201c;Hyperglycaemia&#x201d;, &#x201c;Pneumothorax&#x201d;, and &#x201c;Completed suicide&#x201d; preferred terms were used for cases. The glm() function and binomial statistical family in R were used to conduct the logistic regression analysis. The following expression details the equation for the reporting odds-ratio: OR = (drug-of-interest group with adverse event / control-drug group with adverse event) / (control-drug group with adverse event / control-drug group without an adverse event). The &#x2018;control-drug group with adverse event&#x2019; is set to &#x201c;Diarrhoea&#x201d; due to that being the most reported adverse drug event and is most commonly reported in FDA reports in the adolescent age population of patients. Morever, as mentioned, the cases (e.g. drug-of-interest group with adverse event) were set to &#x201c;Hyperglycaemia&#x201d;, &#x201c;Pneumothorax&#x201d;, and &#x201c;Completed suicide.&#x201d; Odds-ratios are reported as: odds-ratio, lower-95% confidence-interval (CI), upper-95% CI, and p-value. A p-value of less than 0.05 was considered to be statistically significant.</p>
            </sec>
        </sec>
        <sec sec-type="results">
            <title>Results</title>
            <p>The study included a total of 6,141 unique cases (male=2938, female=3021, undefined=184) for adolescent-aged patient records, out of a total of 22,784 unique pediatric cases. The compound with the most reported adverse drug reactions was risperidone (n=788) representing 10.64% of all reported cases. We found that of the reported risperidone cases, 90.1% (male=710, female=77, undefined=1) were reported in men alone. The top 10 reported genes associated with risperidone are (GeneCards score): 
                <italic toggle="yes">DRD2</italic> (dopamine receptor D2; 25.88), 
                <italic toggle="yes">PRL</italic> (Prolactin; 25.59), 
                <italic toggle="yes">HTR2A</italic> (5-hydroxytryptamine receptor 2A; 21.38), 
                <italic toggle="yes">CYP2D6</italic> (cytochrome P450 Family 2 Subfamily D Member 6; 20.21), 
                <italic toggle="yes">HTR2C</italic> (14.32), 
                <italic toggle="yes">ABCB1</italic> (ATP binding cassette subfamily B member 1; 13.63), 
                <italic toggle="yes">BDNF</italic> (brain derived neurotropic factor; 11.93), 
                <italic toggle="yes">DRD3</italic> (11.79), 
                <italic toggle="yes">HTR1A</italic> (11.35), and 
                <italic toggle="yes">CYP3A5</italic> (11.03). 
                <xref ref-type="fig" rid="f1">Figure 1</xref> illustrates the reporting frequencies of the top 15 reported drugs in adolescents.</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Frequencies for the top 15 reported drugs in adolescent patient records identified in the FDA Adverse Events Reporting system ranging from the 3
                        <sup>rd</sup> quarter of 2014 to the 3
                        <sup>rd</sup> quarter of 2017.</title>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/17384/58662966-9359-480f-bb80-5d879c8a2581_figure1.gif"/>
            </fig>
            <p>The most commonly reported clinical indication was prophylaxis (12.82%), followed by acute lymphocytic leukemia (6.55%), and product used for unknown indication (6.44%). 
                <xref ref-type="fig" rid="f2">Figure 2a</xref> illustrates the reporting frequencies of the top fifteen reported clinical indications in the adolescent patient records from our study. The most reported adverse drug reaction was diarrhea (n=110, male=55, female=53, undefined=2) which represented 4.62% of the all of the reported cases. Following diarrhea, hyperglycemia (n=45, male=35, female=10) was the second most reported adverse drug event representing 4.43% of all reported cases. 
                <xref ref-type="fig" rid="f2">Figure 2b</xref> illustrates the reporting frequencies of the top fifteen reported adverse drug reactions for all adolescent cases.</p>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <p>Frequencies for the top 15 reported (
                        <bold>a</bold>) clinical indications and (
                        <bold>b</bold>) adverse drug reactions (ADRs) in adolescent patient records identified in the FDA Adverse Events Reporting system ranging from the 3
                        <sup>rd</sup> quarter of 2014 to the 3
                        <sup>rd</sup> quarter of 2017.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/17384/58662966-9359-480f-bb80-5d879c8a2581_figure2.gif"/>
            </fig>
            <p>We conducted logistic regression and reported odds-ratios (OR) by setting the control variable to the most commonly reported adverse event, diarrhea (4.62%) and tested the second most common ADR, hyperglycemia (4.43%) and subsequently a rather specific adverse drug reaction such as pneumothorax (3.91%, n=12, male=6, female=6), across the top twenty reported FAERS drugs in our study. We found that risperidone OR=214 (95% confidence interval [CI], 148 &#x2013; 308, p= 5.60e-183) resulted in the highest odds of causing hyperglycemia and that tacrolimus/tacrolimus anhydrous (n=18, male=11, female=7) OR=1.17 (95% CI, 1.13 &#x2013; 1.32, p=0.00129) also increased the odds of hyperglycemia. In the preceding analysis we identified methotrexate (n=437, male=196, female=225, undefined=16) OR=0.67 (95% CI, 0.577 &#x2013; 0.778, p=1.60e-07) increased the odds of diarrhea. Further, we found that ondansetron hydrochloride (n=75, male=22, female=53) OR=7.12 (95% CI, 1.59 &#x2013; 31.9, p=0.0104) resulted in the highest odds of causing pneumothorax among the top 20 most frequently reported drugs in our study.</p>
            <p>
                <xref ref-type="fig" rid="f3">Figure 3a</xref> illustrates the top 10 ADR reporting frequencies of risperidone and 
                <xref ref-type="fig" rid="f3">Figure 3b</xref> provides a graphical view of the top 10 clinical indications for prescribing risperidone in the teenage population, as found in our results. The three most frequent ADRs associated with risperidone were reported to be gynecomastia (21.31%), abnormal weight-gain (10.68%), and obesity (7.25%). Further, the top three most frequently reported indications associated with risperidone were reported to be bipolar disorder (14.42%), attention deficit/hyperactivity disorder (12.51%), and depression (7.79%) in teenagers.</p>
            <fig fig-type="figure" id="f3" orientation="portrait" position="float">
                <label>Figure 3. </label>
                <caption>
                    <p>Frequencies for the top 10 reported (
                        <bold>a</bold>) adverse drug reactions and (
                        <bold>b</bold>) reported clinical indications for risperidone in adolescent patient records identified in the FDA Adverse Events Reporting system ranging from the 3
                        <sup>rd</sup> quarter of 2014 to the 3
                        <sup>rd</sup> quarter of 2017.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/17384/58662966-9359-480f-bb80-5d879c8a2581_figure3.gif"/>
            </fig>
            <p>We identified that the top three medications associated with drug-drug interactions (n=182, male=85, female=97) were olanzapine (8.96%), lorazepam (8.08%), and risperidone (5.36%). The odd-ratios for drugs reported to cause drug-drug interactions were found to be: valproic acid OR=221 (95% CI, 93.90 &#x2013; 522.00, p=6.20e-35), diazepam OR=170 (95% CI, 62.60 &#x2013; 463.00, p=7.82e-24), risperidone OR=71.0 (95% CI, 41.40 &#x2013; 122.00, p=4.17e-54), diphendydramine OR=46.1 (95% CI, 23.60 &#x2013; 90.00, p=3.56e-29), lorazepam OR=6.08 (95% CI, 4.05 &#x2013; 9.130, p=3.25e-18), and tacrolimus OR=4.28 (95% CI, 2.73 &#x2013; 6.71, p=2.45e-10); while amlodipine besylate OR=0.213 (95% CI, 0.1260 &#x2013; 0.361, p=9.17e-09) was associated with diarrhea in this drug grouping. 
                <xref ref-type="fig" rid="f4">Figure 4a</xref> illustrates the frequencies for the top fifteen reported medications associated with drug-drug interactions.</p>
            <fig fig-type="figure" id="f4" orientation="portrait" position="float">
                <label>Figure 4. </label>
                <caption>
                    <p>Frequencies for the top 15 reported (
                        <bold>a</bold>) medications associated with drug-drug interactions (DDIs) and (
                        <bold>b</bold>) completed suicide in adolescent patient records identified in the FDA Adverse Events Reporting system ranging from the 3
                        <sup>rd</sup> quarter of 2014 to the 3
                        <sup>rd</sup> quarter of 2017.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/17384/58662966-9359-480f-bb80-5d879c8a2581_figure4.gif"/>
            </fig>
            <p>In assessing the odds-ratios for completed suicide, with a control of diarrhea, among the top twenty associated drugs with completed suicide (n=34, male=8, female=23, undefined=3), we found that ibuprofen OR=188 (95% CI, 105.00 &#x2013; 335.00, p=4.17e-70) resulted in the highest odds in adolescent cases. Further, we also found, in order of decreasing odds: quetiapine fumarate OR=116 (95% CI, 48.40 &#x2013; 278.00, p=1.43e-26), diazepam OR=86.0 (95% CI, 32.80 &#x2013; 225.00, p=1.15e-19), certirizine hydrochloride OR=59.1 (95% CI, 27.90 &#x2013; 126.00, p=2.33e-26), diphenhydramine OR=16.5 (95% CI, 8.68 &#x2013; 31.30, p=1.12e-17), and risperidone OR=4.48 (95% CI, 2.27 &#x2013; 8.82, p=1.49e-05) also were associated with increased odds of completed suicide within adolescent cases.</p>
            <p>Contrastingly, hydroxyzine hydrochloride OR=0.0946 (95% CI, 0.0595 &#x2013; 0.150, p=2.08e-23) and lorazepam OR=0.254 (95% CI, 0.1410 &#x2013; 0.458, p=5.15e-06) were found to be associated with increased the odds for diarrhea, among top twenty compounds tested for completed suicide. Neither mirtazapine (p=0.980) nor herbals (p=0.990) were associated with increased odds of completed suicide, despite being listed as second and fourth in associated frequency. Similarly, acetaminophen/butalbital (p=0.996), acetaminophen/hydrocodone (p=0.996), alcohol (p=0.996), atorvastatin calcium (p=0.996), carbamazepine (p=0.996), fluoxetine hydrochloride (p=0.993), mirtazapine (p=0.980), paroxetine hydrochloride (p=0.995), and quetiapine (p=0.976, in contrast to quetiapine fumarate p=1.43e-26) did not increase odds of completed suicide, in our analysis. 
                <xref ref-type="fig" rid="f4">Figure 4b</xref> depicts the top fifteen drugs associated with completed suicide in adolescent patient records identified in the FAERS.</p>
            <p>The top ten genes associated with ibuprofen, the compound with the highest odds for completed suicide, in this study were found to be 
                <italic toggle="yes">PTGS2</italic> (prostaglandin-endoperoxide synthase 2; 32.79), 
                <italic toggle="yes">PTGS1</italic> (22.74), 
                <italic toggle="yes">ALB</italic> (albumin; 16.90), 
                <italic toggle="yes">CYP2C9</italic> (16.71), 
                <italic toggle="yes">ILB</italic> (interleukin 1 beta; 15.59), 
                <italic toggle="yes">OXAlL</italic> (OXAlL mitochondrial inner membrane protein; 14.28), 
                <italic toggle="yes">IL6</italic> (13.12), 
                <italic toggle="yes">IL10</italic> (12.83), 
                <italic toggle="yes">CYP2C8</italic> (12.64), and 
                <italic toggle="yes">IL1RN</italic> (11.82).</p>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>In this study, we chose the adolescent data, over the adult and elderly age groups, in efforts to minimize polypharmacy and to address the scope of the primary aim of our study. We identified pharmacogenes associated with drugs reported with adverse drug reactions and serves as a guide for clinical pharmacology services to prioritize medications in both the inpatient and outpatient care setting. We found that risperidone, a second-generation antipsychotic, with FDA-approval for managing schizophrenia, bipolar I disorder (acute manic/mixed), autistic disorder associated irritability, and Tourette&#x2019;s syndrome in pediatrics represented the most reported drug in teenagers. We also found that two of the top three most frequently reported indications for risperidone, in adolescent cases, were indications which are not FDA-approved &#x2013; attention deficit/hyperactivity disorder (12.51%) and depression (7.79%). Thus, these findings highlight the unmet clinical need to increase the number of clinical pharmacology-trained physicians to serve as pharmacogenomic consultants and provide comprehensive patient care advancing genomic medicine (
                <xref ref-type="bibr" rid="ref-2">Boorstein &amp; Historian, 2018</xref>).</p>
            <p>Prednisolone sodium succinate (3.81%), an anti-inflammatory glucocorticoid with various indications, and the anti-tumor necrosis factor-&#x03b1; (TNF- &#x03b1;) monoclonal antibody &#x2013; infliximab (3.35%), were second and third in reporting frequency for adolescent patients, respectively. More precise dosing of infliximab may be achieved by pharmacologists using pharmacometrics methods that utilize measured plasma concentrations to recommend doses and dosing intervals to avoid sub-therapeutic concentrations.</p>
            <p>To confirm our findings that showed an increased odds of pneumothorax with ondansetron, we used the OpenVigil 2.1-MedDRA (version 2.1, 
                <ext-link ext-link-type="uri" xlink:href="https://www.is.informatik.uni-kiel.de/pvt/OpenVigilMedDRA17/search/">https://www.is.informatik.uni-kiel.de/pvt/OpenVigilMedDRA17/search/</ext-link>) an online pharmacovigilence analysis tool developed by the Christian Albrecht University of Kiel, Germany (
                <xref ref-type="bibr" rid="ref-29">B&#x00f6;hm 
                    <italic toggle="yes">et al</italic>., 2016</xref>). OpenVigil version 2.1 includes the FAERS data from 4th quarter of 2003 to the first quarter of 2018. Our odansetron-pneumothorax discovery was confirmed by OpenVigil analysis tool and confirmed that for the adolescent age-group ondansetron increased the odds of pneumothorax: Relative Reporting Ratio = 7.037 (95% CI, 2.6 &#x2013; 19.04), Proportional Reporting Ratio = 7.291 (95% CI, 2.69 &#x2013; 19.75), and Reporting Odds Ratio = 7.346 (95% CI, 2.69 &#x2013; 20.06). These results further confirm and strengthen our methodology used in this article. We went a step further and confirmed the increased odds of the ondansetron-pneumothorax association in all age groups using OpenVigil and found: RRR = 5.644 (95% CI, 4.53 &#x2013; 7.03), PRR = 5.732 (95% CI, 4.6 &#x2013; 7.14), and OR = 5.751 (95% CI, 4.61 &#x2013; 7.17).</p>
            <p>Therefore, in reference to our results suggesting increased odds of pneumothorax with ondansetron hydrochloride, patients who have a history of pneumothorax, or have conditions with known increased prevalence of pneumothorax (e.g. Marfan&#x2019;s syndrome, Ehlers-Danlos syndrome, rheumatoid arthritis, poly- and dermato-myositis, ankylosing spondylitis, systemic sclerosis) should be managed with an alternative antiemetic. Further, additional studies should be pursued investigating the mechanisms connective tissue diseases and gene expression modulation with ondansetron.</p>
            <p>To understand the pharmacokinetic-pharmacogenomic implications of prescribing risperidone in medical practice, a population pharmacokinetic study reported that relative to normal/extensive CYP2D6 metabolizers, CYP2D6 (*10/*10) poor metabolizers experience a 64% slower oral clearance rate, 72% slower absorption rate in the gastrointestinal tract, and a 53% slower clearance from the central compartment of risperidone to the 9-hydroxyrisperidone metabolite compartment (
                <xref ref-type="bibr" rid="ref-30">Yoo 
                    <italic toggle="yes">et al</italic>., 2012</xref>). These are striking findings and these same CYP2D6 poor metabolizer&#x2019;s experience a 3-fold increase in risperidone area-under-the-concentration-time curve (i.e. AUC or drug exposure), when compared to normal metabolizers. To put this into perspective of clinically relevant drug-drug interactions, if a physician prescribes risperidone with either fluoxetine, paroxetine, quinidine, terbinafine, or bupropion (all strong CYP2D6 inhibitors) in a patient who is a normal/extensive CYP2D6 metabolizer, that patient will experience a greater than or equal to 5-fold increase in total risperidone exposure alone, and can be further referenced from the FDA&#x2019;s Table of Substrates, Inhibitors and Inducers. Moreover, if this patient is has any loss-of-function CYP2D6 single nucleotide polymorphism (SNP), resulting in decreased ability to clear risperidone, the 5-fold increase in total risperidone drug exposure is further increased and could potentially lead to the reported risperidone adverse drug reactions (e.g. gynecomastia, abnormal weight-gain, and obesity). Therefore, caution should be used when associating risperidone with any particular adverse drug reaction alone and should be properly assessed by reviewing the complete medical record by a physician with pharmacogenomics training or clinical pharmacologists.</p>
            <p>Approximately nine of the top fifteen reported drugs associated with DDIs, shown in 
                <xref ref-type="fig" rid="f4">Figure 4a</xref>, are prescribed in patients treated for mental health disorders. It may be that patients are experiencing the compounded effects of multiple prescriptions medications competing for the same hepatic biotransformation pathways, coupled with a loss-of-function SNP affecting the primary drug-gene pathway, rather than the later alone (
                <xref ref-type="bibr" rid="ref-24">Storelli 
                    <italic toggle="yes">et al.</italic>, 2018</xref>). Therefore, these drug-drug-gene interactions resulting in phenoconversion, from a normal metabolizer to a poor or intermediate metabolizer, is an important consultation area for clinical pharmacologists. Similarly, this is another area where the use of TDM and Bayesian dosing support with pharmacometrics may be the most efficient method (
                <xref ref-type="bibr" rid="ref-9">Hiemke 
                    <italic toggle="yes">et al.</italic>, 2011</xref>; 
                <xref ref-type="bibr" rid="ref-17">Polasek 
                    <italic toggle="yes">et al.</italic>, 2018</xref>).</p>
            <p>The association between prescription and non-prescription drug pharmacokinetics, drug metabolizing enzymes encoded by cytochrome P450 genes (e.g. CYP2B6, CYP2C19, CYP2D6, etc.) responsible for metabolism of these medicines, and toxicity due to excessively high blood drug levels (i.e. plasma concentrations) resulting in adverse-drug reactions is well established on the FDA&#x2019;s Table of Pharmacogenomic Biomarkers in Drug Labelling (
                <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/Drugs/ScienceResearch/ucm572698.htm">https://www.fda.gov/Drugs/ScienceResearch/ucm572698.htm</ext-link>)  and the FDA&#x2019;s Table of Substrates, Inhibitors and Inducers (
                <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/drugs/developmentapprovalprocess/developmentresources/druginteractionslabeling/ucm093664.htm">https://www.fda.gov/drugs/developmentapprovalprocess/developmentresources/druginteractionslabeling/ucm093664.htm</ext-link>). Further, these known drug-gene interactions, drug-drug-interactions, and extrapolated drug-drug-gene interactions form the basis for the need of pharmacogenomics education within the implementation, education, and practice of Genomic Medicine by physicians, providing consultations by clinical pharmacology trained physicians, and educating various healthcare practitioners to improve safety of prescription and non-prescription medicines. The National Human Genomic Research Institute, of the National Institutes of Health, recently established a Pharmacogenomics Work Group within the Inter-Society Coordinating Committee for Practitioner Education in Genomics (ISCC) to address the need for addressing the pharmacogenomic education needs within clinical genomic medicine (
                <ext-link ext-link-type="uri" xlink:href="https://www.genome.gov/27554614/intersociety-coordinating-committee-for-practitioner-education-in-genomics-iscc/">https://www.genome.gov/27554614/intersociety-coordinating-committee-for-practitioner-education-in-genomics-iscc/</ext-link>).  There is a need to increase the number of clinical pharmacology trained physicians in the United States to support the efforts of pharmacogenomics as is already implemented in many countries. Schools of Nursing, Physician Assistant studies, and Pharmacy have already begun integrating the most common drug-gene interactions; however, due to the need for comprehensive medical care, medical students who select training in clinical pharmacology are essential for providing consultations within healthcare systems and in stand-alone clinics.</p>
            <p>The limitations and strength of the FDA Adverse Events Reporting System database is that the reports are voluntarily submitted by physicians, pharmacists, lawyers, patient consumers, and various healthcare professionals. Therefore, a limitation is that the complete medical histories are not factored into the analysis and the results are indicative of a subset of all patient adverse drug event experiences. However, despite the limitations, the FAERS database provides insight to the importance of publically available pharmacovigilence data that allows open analysis, discovery for potential repurposing of existing drugs, and provides a reporting mechanism for patients and caregivers to share their medication experiences (
                <xref ref-type="bibr" rid="ref-4">Burkhart 
                    <italic toggle="yes">et al.</italic>, 2015</xref>; 
                <xref ref-type="bibr" rid="ref-16">Oshima 
                    <italic toggle="yes">et al.</italic>, 2018</xref>). Further, we do acknowledge previously published efforts that provide insight to adverse drug reaction reporting in pediatric-aged patients (
                <xref ref-type="bibr" rid="ref-32">Cliff-Eribo 
                    <italic toggle="yes">et al</italic>., 2016</xref>; 
                <xref ref-type="bibr" rid="ref-33">De Bie 
                    <italic toggle="yes">et al</italic>., 2015</xref>; 
                <xref ref-type="bibr" rid="ref-31">Lee 
                    <italic toggle="yes">et al</italic>., 2014</xref>).</p>
        </sec>
        <sec sec-type="conclusions">
            <title>Conclusion</title>
            <p>In addition to established pharmacogenomic guidelines, the FAERS database provides an important reference point for clinical pharmacologists to use when prioritizing medication safety consultations, pharmacogenomic education, and when seeking to improve hospital outcomes.</p>
        </sec>
        <sec>
            <title>Data availability</title>
            <p>The data referenced by this article are under copyright with the following copyright statement: Copyright: &#x00ef;&#x00bf;&#x00bd; 2018 Eugene AR and Eugene B</p>
            <p>Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
                <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/"/>
            </p>
            <p>Data used in this study is available from the United States Food and Drug Administration (FDA) website, with specific links provided in 
                <xref ref-type="table" rid="T1">Table 1</xref>.</p>
        </sec>
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    </back>
    <sub-article article-type="reviewer-report" id="report37199">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.17384.r37199</article-id>
            <title-group>
                <article-title>Reviewer response for version 2</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Hawcutt</surname>
                        <given-names>Daniel D</given-names>
                    </name>
                    <xref ref-type="aff" rid="r37199a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-8120-6507</uri>
                </contrib>
                <aff id="r37199a1">
                    <label>1</label>Department of Women's and Children's Health, University of Liverpool, Liverpool, UK</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>14</day>
                <month>9</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Hawcutt DD</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport37199" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.14970.2"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>I am happy that the authors have considered the previous points raised, and addressed them.</p>
            <p> </p>
            <p> This article helps our understanding of the potential harms teenagers can experience from medications.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>I cannot comment. A qualified statistician is required.</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Pediatric Pharmacology and pediatric pharmacogenomics</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report37198">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.17384.r37198</article-id>
            <title-group>
                <article-title>Reviewer response for version 2</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Carcas</surname>
                        <given-names>Antonio J.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r37198a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1823-4174</uri>
                </contrib>
                <aff id="r37198a1">
                    <label>1</label>Clinical Pharmacology Department, IdiPAZ, La Paz University Hospital, School of Medicine, Autonomous University of Madrid, Madrid, Spain</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>22</day>
                <month>8</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Carcas AJ</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport37198" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.14970.2"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The authors have addressed very satisfactorily the points I raised in my review and I think that has clarified and improved the paper.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report35300">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.16298.r35300</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Hawcutt</surname>
                        <given-names>Daniel D</given-names>
                    </name>
                    <xref ref-type="aff" rid="r35300a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-8120-6507</uri>
                </contrib>
                <aff id="r35300a1">
                    <label>1</label>Department of Women's and Children's Health, University of Liverpool, Liverpool, UK</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>16</day>
                <month>7</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Hawcutt DD</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport35300" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.14970.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This is an interesting retrospective review of ADR reports submitted to the US FDA for adolescents.</p>
            <p> </p>
            <p> The strengths are that this population are rarely considered independantly, despite having their own health needs and (as noted by the authors) not having quite the severity of polypharmacy as older individuals. Also, the study considers pharmacogenomics related to the most commonly prescribed medicines, using genecards website as the data source.</p>
            <p> </p>
            <p> There is a lot of useful data contained in this publication, however there are some aspects that I think could be improved by some clarifications:</p>
            <p> </p>
            <p> 1) What does a genecard score mean for a gene? I know a link is given, but sentence or two giving an overview would help the reader.</p>
            <p> </p>
            <p> 2) I am uncomfortable about the odds ratios (ORs)&#x00a0; for the completed suicide that feature prominently in the results section of the main paper and the abstract (as they are very very large ORs). Are these describing young people who used the drug as the means to commit suicide, or committed suicide while incidentally using this medication (two very different populations). While I appreciated the lack of medical history mentioned in the discussion, I do worry that presenting these finding when compared to diarrhorea may make the drugs look more dangerous than they are (and I have indicated that professional statistical advice would be useful here&#x00a0; to clarify this point - is diarrhoea the right comparitor, or should it be something else?).&#x00a0;&#x00a0;</p>
            <p> </p>
            <p> 3) Phrases like "need for precision medicine in psychiatry" in the discussion sound as if they suggest the study has identified new (or overlooked) pharmacogenomic associations that a clinical pharmacologist could act on, but unless I have misunderstood, the study does not do this, it only highlights where areas of unmet pharmacogenomic need exist. The pharmacogenomic section could be removed from the paper and it would still be a good paper, but assuming it is kept, then I think it needs to clearer exactly what information this brings to a clinician.</p>
            <p> </p>
            <p> Overall, I enjoyed this paper, and it adds to this field.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>I cannot comment. A qualified statistician is required.</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Pediatric Pharmacology and pediatric pharmacogenomics</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <sub-article article-type="response" id="comment3888-35300">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Eugene</surname>
                            <given-names>Andy</given-names>
                        </name>
                        <aff>Department of Pediatrics, Robert Wood Johnson Medical Schoo, Rutgers University, USA</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>None.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>8</day>
                    <month>8</month>
                    <year>2018</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Reviewer: 1) What does a genecard score mean for a gene? I know a link is given, but sentence or two giving an overview would help the reader.</p>
                <p> 
                    <bold>Response: GeneCards uses an Inferred Functionality Score that provides an objective number that indicates the knowledge level about the functionality of human genes relative to the drug queried in the database by comparing the drug with all possible genes. The final results are ranked according to a relevance score and reported in the results section of this article. In our analysis, we mapped the top ten genes using the GeneCards methodology, as has been previously reported ( Stelzer et al., 2016; Weizmann Institute of Science, 2016).</bold>
                </p>
                <p> </p>
                <p> </p>
                <p> Reviewer: 2) I am uncomfortable about the odds ratios (ORs)&#x00a0; for the completed suicide that feature prominently in the results section of the main paper and the abstract (as they are very very large ORs). Are these describing young people who used the drug as the means to commit suicide, or committed suicide while incidentally using this medication (two very different populations). While I appreciated the lack of medical history mentioned in the discussion, I do worry that presenting these finding when compared to diarrhorea may make the drugs look more dangerous than they are (and I have indicated that professional statistical advice would be useful here&#x00a0; to clarify this point - is diarrhoea the right comparitor, or should it be something else?).&#x00a0;&#x00a0;</p>
                <p> </p>
                <p> </p>
                <p> 
                    <bold>Response: We thank you for this concern and the current study design with selecting of diarrhea as a control, or comparator, was thoroughly research by examining the frequencies of adverse drug reactions for medications in our exploratory analysis. Please see the updated version of the article for the corroboration of our results for risperidone using the OpenVigil 2.1-MedDRA (version 2.1, 
                        <ext-link ext-link-type="uri" xlink:href="https://www.is.informatik.uni-kiel.de/pvt/OpenVigilMedDRA17/search/">https://www.is.informatik.uni-kiel.de/pvt/OpenVigilMedDRA17/search/</ext-link>) an online pharmacovigilence analysis tool developed by the Christian Albrecht University of Kiel, Germany in the discussion section. The reason for the larger odds-ratios is due to the selection of the top 20 drugs ranked and implicated for the adverse drug reaction and not the entire database. Therefore, it is important to note that these are reporting odds-ratios for the top 20 drugs list in the specific adverse drug reaction</bold>.</p>
                <p> </p>
                <p> Reviewer: 3) Phrases like "need for precision medicine in psychiatry" in the discussion sound as if they suggest the study has identified new (or overlooked) pharmacogenomic associations that a clinical pharmacologist could act on, but unless I have misunderstood, the study does not do this, it only highlights where areas of unmet pharmacogenomic need exist. The pharmacogenomic section could be removed from the paper and it would still be a good paper, but assuming it is kept, then I think it needs to clearer exactly what information this brings to a clinician.</p>
                <p> </p>
                <p> 
                    <bold>Response: We thank the referee for the comment and re-wrote the sentence to better reflect the findings and scope of the paper.</bold>
                </p>
                <p>
                    <bold> &#x00a0;</bold>
                </p>
                <p>
                    <bold> Thus, these findings highlight the unmet clinical need to increase the number of clinical pharmacology-trained physicians to serve as pharmacogenomic consultants and provide comprehensive patient care advancing genomic medicine (Boorstein &amp; Historian, 2018).</bold>
                </p>
            </body>
        </sub-article>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report35025">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.16298.r35025</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Carcas</surname>
                        <given-names>Antonio J.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r35025a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-1823-4174</uri>
                </contrib>
                <aff id="r35025a1">
                    <label>1</label>Clinical Pharmacology Department, IdiPAZ, La Paz University Hospital, School of Medicine, Autonomous University of Madrid, Madrid, Spain</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>26</day>
                <month>6</month>
                <year>2018</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2018 Carcas AJ</copyright-statement>
                <copyright-year>2018</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport35025" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.14970.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve-with-reservations</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The aim of this study is to know the most frequently reported drugs associated to adverse drug reactions (and DDIs) in order to prioritize the efforts for clinical pharmacology consultation services. I find this manuscript interesting.</p>
            <p> </p>
            <p> Comments:</p>
            <p> </p>
            <p> Just to clarify, please confirm that adolescent age is considered from 12 to 17 yo.</p>
            <p> </p>
            <p> I agree about the utility of knowing the most frequently reported drugs associated to adverse drug reactions; the author should mention some other similar studies previously published
                <sup>
                    <xref ref-type="bibr" rid="rep-ref-35025-1">1</xref>
                </sup>
                <sup>-</sup>
                <sup>
                    <xref ref-type="bibr" rid="rep-ref-35025-4">4</xref>
                </sup>. I also like the concept that a better knowledge of the most frequent drugs producing AEs can drive prioritization of efforts for clinical pharmacology consultation services. However:</p>
            <p> </p>
            <p> - Authors should give a more detailed description of the design (case/non-case ?) and statistical methods allowing calculation of OR.</p>
            <p> - We should not disregard the potential of this analysis to rise hypothesis about the link between the AE, DDIs and drug PK and pharmacogenetics. A comment by the authors would be useful.</p>
            <p> - I also think that it would be useful for readers to provide a more specific comment about the relationship between pharmagenomics and AEs whose knowledge could improve drug safety. For example, CYP2D6 polymorphisms have been related to weight gain and hyperprolactinemia in patients with risperidone (including adolescents). On the other side, the association of ondansetron with pneumothorax could be a confounding by indication and not a true causal association.</p>
            <p> </p>
            <p> Although not new, it is interesting also the finding that frequently reported indications for risperidone were non-approved indications by FDA and that top fifteen reported drugs associated with DDIs are prescribed in patients treated for mental health disorders.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Partly</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Partly</p>
            <p>Reviewer Expertise:</p>
            <p>NA</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.</p>
        </body>
        <back>
            <ref-list>
                <title>References</title>
                <ref id="rep-ref-35025-1">
                    <label>1</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Drugs associated with adverse events in children and adolescents.</article-title>
                        <source>
                            <italic>Pharmacotherapy</italic>
                        </source>.<year>2014</year>;<volume>34</volume>(<issue>9</issue>) :
                        <elocation-id>10.1002/phar.1455</elocation-id>
                        <fpage>918</fpage>-<lpage>26</lpage>
                        <pub-id pub-id-type="pmid">24990656</pub-id>
                        <pub-id pub-id-type="doi">10.1002/phar.1455</pub-id>
                    </mixed-citation>
                </ref>
                <ref id="rep-ref-35025-2">
                    <label>2</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Pediatric Drug Safety Surveillance in FDA-AERS: A Description of Adverse Events from GRiP Project.</article-title>
                        <source>
                            <italic>PLoS One</italic>
                        </source>.<year>2015</year>;<volume>10</volume>(<issue>6</issue>) :
                        <elocation-id>10.1371/journal.pone.0130399</elocation-id>
                        <fpage>e0130399</fpage>
                        <pub-id pub-id-type="pmid">26090678</pub-id>
                        <pub-id pub-id-type="doi">10.1371/journal.pone.0130399</pub-id>
                    </mixed-citation>
                </ref>
                <ref id="rep-ref-35025-3">
                    <label>3</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Mirizzi's syndrome: a contraindication to coelioscopic cholecystectomy.</article-title>
                        <source>
                            <italic>J Laparoendosc Surg</italic>
                        </source>.<year>1991</year>;<volume>1</volume>(<issue>3</issue>) :<fpage>133</fpage>-<lpage>7</lpage>
                        <pub-id pub-id-type="pmid">1751827</pub-id>
                    </mixed-citation>
                </ref>
                <ref id="rep-ref-35025-4">
                    <label>4</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Systematic review of paediatric studies of adverse drug reactions from pharmacovigilance databases.</article-title>
                        <source>
                            <italic>Expert Opin Drug Saf</italic>
                        </source>.<year>2016</year>;<volume>15</volume>(<issue>10</issue>) :
                        <elocation-id>10.1080/14740338.2016.1221921</elocation-id>
                        <fpage>1321</fpage>-<lpage>8</lpage>
                        <pub-id pub-id-type="pmid">27501085</pub-id>
                        <pub-id pub-id-type="doi">10.1080/14740338.2016.1221921</pub-id>
                    </mixed-citation>
                </ref>
            </ref-list>
        </back>
        <sub-article article-type="response" id="comment3887-35025">
            <front-stub>
                <contrib-group>
                    <contrib contrib-type="author">
                        <name>
                            <surname>Eugene</surname>
                            <given-names>Andy</given-names>
                        </name>
                        <aff>Department of Pediatrics, Robert Wood Johnson Medical Schoo, Rutgers University, USA</aff>
                    </contrib>
                </contrib-group>
                <author-notes>
                    <fn fn-type="conflict">
                        <p>
                            <bold>Competing interests: </bold>None.</p>
                    </fn>
                </author-notes>
                <pub-date pub-type="epub">
                    <day>8</day>
                    <month>8</month>
                    <year>2018</year>
                </pub-date>
            </front-stub>
            <body>
                <p>Reviewer: Just to clarify, please confirm that adolescent age is considered from 12 to 17 yo.</p>
                <p> </p>
                <p> </p>
                <p> 
                    <bold>Response: Yes, in the methods section, I added a comment to specifically reflect the numerical age group for adolescents as (12 &#x2013; 17 years-old).</bold>
                </p>
                <p> </p>
                <p> Reviewer: I agree about the utility of knowing the most frequently reported drugs associated to adverse drug reactions; the author should mention some other similar studies previously published
                    <ext-link ext-link-type="uri" xlink:href="https://f1000research.com/articles/7-677/v1#rep-ref-35025-1">
                        <sup>1</sup>
                    </ext-link>
                    <sup>-</sup>
                    <ext-link ext-link-type="uri" xlink:href="https://f1000research.com/articles/7-677/v1#rep-ref-35025-4">
                        <sup>4</sup>
                    </ext-link>. I also like the concept that a better knowledge of the most frequent drugs producing AEs can drive prioritization of efforts for clinical pharmacology consultation services. However:</p>
                <p> </p>
                <p> </p>
                <p> 
                    <bold>Response: We thank you for the recommending the references from similar previously published efforts identifying adverse drug reactions in pediatric-aged patients. Therefore, we added 3 of the four references you recommended in this updated version of our research article.</bold>
                </p>
                <p>
                    <bold> &#x00a0;</bold> 
                    <list list-type="order">
                        <list-item>
                            <p>
                                <bold>Lee WJ, Lee TA, Pickard AS, Caskey RN, Schumock GT: Drugs associated with adverse events in children and adolescents.Pharmacotherapy. 2014;&#x00a0;34&#x00a0;(9): 918-26&#x00a0;</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>de Bie S, Ferrajolo C, Straus SM, Verhamme KM, Bonhoeffer J, Wong IC, Sturkenboom MC, GRiP network: Pediatric Drug Safety Surveillance in FDA-AERS: A Description of Adverse Events from GRiP Project.PLoS One. 2015;&#x00a0;10&#x00a0;(6): e0130399&#x00a0;</bold>
                            </p>
                        </list-item>
                        <list-item>
                            <p>
                                <bold>Cliff-Eribo KO, Sammons H, Choonara I: Systematic review of paediatric studies of adverse drug reactions from pharmacovigilance databases.Expert Opin Drug Saf. 2016;&#x00a0;15&#x00a0;(10): 1321-8&#x00a0;</bold>
                            </p>
                        </list-item>
                    </list> 
                    <bold>&#x00a0;</bold>
                </p>
                <p>
                    <bold> So, we added a statement in the article:</bold>
                </p>
                <p>
                    <bold> Further, we do acknowledge previously published efforts that provide insight to adverse drug reaction reporting in pediatric-aged patients (Lee et al. 2014; De Bie et al. 2015; Cliff-Eribo, Sammons, and Choonara 2016).</bold>
                </p>
                <p> Reviewer: Authors should give a more detailed description of the design (case/non-case ?) and statistical methods allowing calculation of OR.</p>
                <p> 
                    <bold>Response: We thank the reviewer for this comment and have added three sentences detailing the methodology using in R for calculation of the odds-ratios within the statistics sub-section in the methods of this research manuscript.</bold>
                </p>
                <p>
                    <bold> &#x00a0;</bold>
                </p>
                <p>
                    <bold> The following expression details the equation for the reporting odds-ratio: OR = (drug-of-interest group with adverse event / control-drug group with adverse event) / (control-drug group with adverse event / control-drug group without an adverse event). The &#x2018;control-drug group with adverse event&#x2019; is set to &#x201c;Diarrhoea&#x201d; due to that being the most reported adverse drug event and is most commonly reported in FDA reports in the adolescent age population of patients. Morever, as mentioned, the cases (e.g. drug-of-interest group with adverse event) were set to &#x201c;Hyperglycaemia&#x201d;, &#x201c;Pneumothorax&#x201d;, and &#x201c;Completed suicide.&#x201d;</bold>
                </p>
                <p> </p>
                <p> Reviewer: We should not disregard the potential of this analysis to rise hypothesis about the link between the AE, DDIs and drug PK and pharmacogenetics. A comment by the authors would be useful.</p>
                <p> 
                    <bold>Response: The association between prescription and non-prescription drug pharmacokinetics, drug metabolizing enzymes encoded by cytochrome P450 genes (e.g. CYP2B6, CYP2C19, CYP2D6, etc.) responsible for metabolism of these medicines, and toxicity due to excessively high blood drug levels (i.e. plasma concentrations) resulting in adverse-drug reactions is well established on the FDA&#x2019;s Table of Pharmacogenomic Biomarkers in Drug Labelling (
                        <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/Drugs/ScienceResearch/ucm572698.htm">https://www.fda.gov/Drugs/ScienceResearch/ucm572698.htm</ext-link>) and the FDA&#x2019;s Table of Substrates, Inhibitors and Inducers (
                        <ext-link ext-link-type="uri" xlink:href="https://www.fda.gov/drugs/developmentapprovalprocess/developmentresources/druginteractionslabeling/ucm093664.htm">https://www.fda.gov/drugs/developmentapprovalprocess/developmentresources/druginteractionslabeling/ucm093664.htm</ext-link>). Further, these known drug-gene interactions, drug-drug-interactions, and extrapolated drug-drug-gene interactions form the basis for the need of pharmacogenomics education within the implementation, education, and practice of Genomic Medicine by physicians, providing consultations by clinical pharmacology trained physicians, and educating various healthcare practitioners to improve safety of prescription medicines. The National Human Genomic Research Institute, of the National Institutes of Health, recently established a Pharmacogenomics Work Group within the Inter-Society Coordinating Committee for Practitioner Education in Genomics (ISCC) to address the need for addressing the pharmacogenomic education needs within clinical genomic medicine (
                        <ext-link ext-link-type="uri" xlink:href="https://www.genome.gov/27554614/intersociety-coordinating-committee-for-practitioner-education-in-genomics-iscc/">https://www.genome.gov/27554614/intersociety-coordinating-committee-for-practitioner-education-in-genomics-iscc/</ext-link>). There is a need to increase the number of clinical pharmacology trained physicians in the United States to support the efforts of pharmacogenomics as is already implemented in many countries. Schools of Nursing, Physician Assistant studies, and Pharmacy have already begun integrating the most common drug-gene interactions; however, in due to the need for comprehensive medical care, medical students who select training in clinical pharmacology are essential for providing consultations within healthcare systems and in stand-alone clinics.</bold>
                </p>
                <p> </p>
                <p> </p>
                <p> </p>
                <p> Reviewer: I also think that it would be useful for readers to provide a more specific comment about the relationship between pharmagenomics and AEs whose knowledge could improve drug safety. For example, CYP2D6 polymorphisms have been related to weight gain and hyperprolactinemia in patients with risperidone (including adolescents). On the other side, the association of ondansetron with pneumothorax could be a confounding by indication and not a true causal association.</p>
                <p> 
                    <bold>Response: To confirm our findings that showed an increased odds of pneumothorax with ondansetron, we used the OpenVigil 2.1-MedDRA (version 2.1, 
                        <ext-link ext-link-type="uri" xlink:href="https://www.is.informatik.uni-kiel.de/pvt/OpenVigilMedDRA17/search/">https://www.is.informatik.uni-kiel.de/pvt/OpenVigilMedDRA17/search/</ext-link>) an online pharmacovigilence analysis tool developed by the Christian Albrecht University of Kiel, Germany. OpenVigil version 2.1 includes the FAERS data from 4
                        <sup>th</sup> quarter of 2003 to the first quarter of 2018. The odansetron-pneumothorax association was confirmed using the OpenVigil analysis tool and confirmed that for the reported adolescent age-group cases, ondansetron increased the odds of pneumothorax: Relative Reporting Ratio (RRR) = 7.037 (95% CI, 2.600 &#x2013; 19.0408), Proportional Reporting Ratio (PRR) = 7.291 (95% CI, 2.6924 &#x2013; 19.745), and Reporting Odds Ratio (OR) = 7.346 (95% CI, 2.6899 &#x2013; 20.0613). These results further confirm and strengthen our methodology used in this article. We went a step further and confirmed the increased odds of the ondansetron-pneumothorax association in all age groups using OpenVigil and found: RRR = 5.644 (95% CI, 4.5326 &#x2013; 7.0289), PRR = 5.732 (95% CI, 4.6030 &#x2013; 7.1386), and OR = 5.751 (95% CI, 4.6139 &#x2013; 7.1677).</bold>
                </p>
                <p>
                    <bold> &#x00a0;</bold>
                </p>
                <p>
                    <bold> &#x00a0;</bold>
                </p>
                <p>
                    <bold> To understand the pharmacokinetic-pharmacogenomic implications of prescribing risperidone in medical practice, a population pharmacokinetic study reported that relative to normal/extensive CYP2D6 metabolizers, CYP2D6 (*10/*10) poor metabolizers experience a 64% slower oral clearance rate, 72% slower absorption rate in the gastrointestinal tract, and a 53% slower clearance from the central compartment of risperidone to 9-hydroxyrisperidone metabolite compartment (Yoo et al. 2012). These are striking findings and these same CYP2D6 poor metabolizer&#x2019;s experience a 3-fold increase in risperidone in the area under the concentration-time curve (i.e. AUC or drug exposure), when compared to normal metabolizers. To put this into perspective of clinically relevant drug-drug interactions in psychiatry where patients experience unnecessary adverse drug reactions, if a physician prescribes risperidone with either fluoxetine, paroxetine, quinidine, terbinafine, or bupropion (all strong CYP2D6 inhibitors) in a patient who is a normal/extensive CYP2D6 metabolizer, that patient will experience a greater than or equal to 5-fold increase in total risperidone exposure alone, and can be further referenced from the FDA&#x2019;s Table of Substrates, Inhibitors and Inducers. Moreover, if this patient is has any loss-of-function CYP2D6 genotype, resulting in decreased ability to clear risperidone, the 5-fold increase in total risperidone drug exposure is further increased and could potentially lead to the reported risperidone adverse drug reactions (e.g. gynecomastia, abnormal weight-gain, and obesity). Therefore, caution should be used when associating risperidone withj any particular adverse drug reaction alone and should be properly assessed by reviewing the complete medical record by a physician with pharmacogenomics training or clinical pharmacologists.</bold>
                </p>
                <p> </p>
            </body>
        </sub-article>
    </sub-article>
</article>
