<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="brief-report" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">F1000Research</journal-id>
            <journal-title-group>
                <journal-title>F1000Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2046-1402</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/f1000research.22352.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Brief Report</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Inhibition of 
                    <italic>in vitro</italic> Ebola infection by anti-parasitic quinoline derivatives</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Goyal</surname>
                        <given-names>Shawn</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Binnington</surname>
                        <given-names>Beth</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>McCarthy</surname>
                        <given-names>Stephen D.S.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Desma&#x00eb;le</surname>
                        <given-names>Didier</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>F&#x00e9;rri&#x00e9;</surname>
                        <given-names>Laurent</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Figad&#x00e8;re</surname>
                        <given-names>Bruno</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-4226-8489</uri>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Loiseau</surname>
                        <given-names>Philippe M.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-8542-6793</uri>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a4">4</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Branch</surname>
                        <given-names>Donald R.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Resources</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Validation</role>
                    <role content-type="http://credit.niso.org/">Visualization</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c2">b</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                    <xref ref-type="aff" rid="a2">2</xref>
                    <xref ref-type="aff" rid="a5">5</xref>
                    <xref ref-type="aff" rid="a6">6</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, M5H 2N2, Canada</aff>
                <aff id="a2">
                    <label>2</label>Centre for Innovation, Canadian Blood Services, Toronto, Ontario, M5H 2N2, Canada</aff>
                <aff id="a3">
                    <label>3</label>Institut Galien, CNRS, Universit&#x00e9; Paris-Saclay, 5 Rue Jean-Baptiste Cl&#x00e9;ment, Chatenay-Malabry, 92290, France</aff>
                <aff id="a4">
                    <label>4</label>CNRS BioCIS, Universit&#x00e9; Paris-Saclay, Ch&#x00e2;tenay-Malabry, 92290, France</aff>
                <aff id="a5">
                    <label>5</label>Department of Medicine, University of Toronto, Toronto, Ontario, Canada</aff>
                <aff id="a6">
                    <label>6</label>Division of Advanced Diagnostics, Toronto General Hospital Research Institute, Toronto, Ontario, Canada</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:philippe.loiseau@u-psud.fr">philippe.loiseau@u-psud.fr</email>
                </corresp>
                <corresp id="c2">
                    <label>b</label>
                    <email xlink:href="mailto:don.branch@utoronto.ca">don.branch@utoronto.ca</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>17</day>
                <month>4</month>
                <year>2020</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2020</year>
            </pub-date>
            <volume>9</volume>
            <elocation-id>268</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>6</day>
                    <month>4</month>
                    <year>2020</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2020 Goyal S et al.</copyright-statement>
                <copyright-year>2020</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://f1000research.com/articles/9-268/pdf"/>
            <abstract>
                <p>There continues to be no approved drugs for the treatment of Ebola virus disease (EVD). Despite a number of candidate drugs showing limited efficacy 
                    <italic toggle="yes">in vitro</italic> and/or in non-human primate studies, EVD continues to plaque certain areas of Africa without any efficacious treatments yet available. Recently, we have been exploring the potential for anti-malarial drugs to inhibit an 
                    <italic toggle="yes">in vitro</italic> model of Ebola Zaire replication using a transcription-competent virus-like particle (trVLP) assay. We examined the efficacy of chloroquine, amodiaquine and 36 novel anti-parasite quinoline derivatives at inhibiting Ebola virus replication. Drug efficacy was tested by trVLP assay and toxicity by MTT assay. Both chloroquine and amodiaquine were effective for inhibition of Ebola virus replication without significant toxicity. The half-maximal inhibitory concentration (IC
                    <sub>50</sub>) of chloroquine and amodiaquine to inhibit Ebola virus replication were IC
                    <sub>50, Chl</sub> = 3.95 &#x00b5;M and IC
                    <sub>50, Amo</sub> = 1.45 &#x00b5;M, respectively. Additionally, three novel quinoline derivatives were identified as having inhibitory activity and low toxicity for Ebola trVLP replication, with 2NH2Q being the most promising derivative, with an IC
                    <sub>50</sub> of 4.66 &#x00b5;M. Quinoline compounds offer many advantages for disease treatment in tropical climates as they are cheap to produce, easy to synthesize and chemically stable. In this report, we have demonstrated the potential of anti-parasite quinolines for further investigation for use in EVD.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Ebola virus</kwd>
                <kwd>antiparasitic drugs</kwd>
                <kwd>antiviral activity</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1" xlink:href="http://dx.doi.org/10.13039/501100000014">
                    <funding-source>Canadian Blood Services</funding-source>
                </award-group>
                <award-group id="fund-2" xlink:href="http://dx.doi.org/10.13039/501100000008">
                    <funding-source>Health Canada</funding-source>
                </award-group>
                <funding-statement>SDSM is a recipient of the Vanier CGS D and Canadian Blood Services GFP graduate awards. DRB is partially funded through support provided by Health Canada, but the views expressed herein to not necessarily represent the view of the federal government of Canada. </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <p>Since its discovery in 1976, Ebola virus  has been responsible for numerous outbreaks, with case fatalities varying from 20% to 90%
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>,
                    <xref ref-type="bibr" rid="ref-2">2</xref>
                </sup>. From 2014 to 2016, West Africa was devastated with the largest Ebola outbreak in recorded history with six countries affected: Nigeria, Senegal, Guinea, Liberia, Mali and Sierra Leone. With no effective therapies or licensed vaccines available, little could be done to treat patients and prevent the spread of the virus
                <sup>
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>. Over a period of two years, Ebola virus was responsible for 28,646 reported infections, with 11,323 deaths
                <sup>
                    <xref ref-type="bibr" rid="ref-1">1</xref>,
                    <xref ref-type="bibr" rid="ref-3">3</xref>
                </sup>.</p>
            <p>Since the outbreak, a vaccine for Ebola virus (rVSV-EBOV) has been developed by the National Microbiological Laboratory in Winnipeg, Manitoba, Canada, and has been shown to be highly protective
                <sup>
                    <xref ref-type="bibr" rid="ref-4">4</xref>
                </sup>. Undoubtedly, the rVSV-EBOV vaccine is to be a powerful defense against future Ebola outbreaks. However, it is unlikely to be sufficient to stop future outbreaks. As the natural host of Ebola virus remains unknown, eradication of Ebola reservoir populations is impossible
                <sup>
                    <xref ref-type="bibr" rid="ref-5">5</xref>
                </sup>. Because of this, future spillover events are an inevitability
                <sup>
                    <xref ref-type="bibr" rid="ref-6">6</xref>
                </sup>. Additionally, the unstable political environment of many affected African countries further complicates the effective administration of vaccines; as seen in the Democratic Republic of Congo during the current Ebola outbreak
                <sup>
                    <xref ref-type="bibr" rid="ref-2">2</xref>,
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. These factors emphasize the need for acute infection therapies.</p>
            <p>Previous publications have focused on potential drugs predicted to have efficacy against Ebola virus disease (EVD) and included drugs already approved and widely used that could perhaps be repurposed as treatments for EVD
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>,
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. Through a virtual screening process, Veljkovic 
                <italic toggle="yes">et al.</italic>
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>
                </sup>  identified 267 US Food and Drug Administration (FDA)-approved drugs with possible inhibitory effects against Ebola virus. Among these were the antimalarial quinoline drugs amodiaquine and chloroquine. Chloroquine has been shown to be protective against Ebola virus disease in an 
                <italic toggle="yes">in vivo</italic> mouse model
                <sup>
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. Additionally, amodiaquine has been identified as having inhibitory effects in a pseudo-type entry assay of Ebola virus
                <sup>
                    <xref ref-type="bibr" rid="ref-9">9</xref>
                </sup>. Furthermore, retrospective analysis of relative risks for patients from the 2014 to 2016 West Africa outbreak identified amodiaquine in combination with artesunate as having therapeutic effects. Data have suggested that patients infected with Ebola virus that were prescribed artesunate-amodiaquine had a significantly reduced risk of death compared to those that were prescribed artemether-lumefantrine, the latter treatment not being statistically significantly different from no treatment
                <sup>
                    <xref ref-type="bibr" rid="ref-10">10</xref>
                </sup>. This suggests that the quinoline derivative drug class may have therapeutic use in the treatment of EVD.</p>
            <p>In this article, the efficacy of 36 novel quinolines (
                <xref ref-type="table" rid="T1">Table 1</xref>) derivatives and previously approved quinoline compounds (amodiaquine and chloroquine) were examined for their ability to inhibit Ebola virus replication.  Our results support previous reports that suggested that amodiaquine and chloroquine could be potential treatments for EVD. In addition, we identified additional, novel, quinolines that could be candidates for further study of their potential for inhibition of Ebola virus infection.</p>
            <table-wrap id="T1" orientation="portrait" position="anchor">
                <label>Table 1. </label>
                <caption>
                    <title>Antiparasitic quinolines examined, chemical structures, inhibitory activity and toxicity testing.</title>
                </caption>
                <table content-type="article-table" frame="hsides">
                    <thead>
                        <tr>
                            <th align="center" colspan="1" rowspan="1">Drug</th>
                            <th align="center" colspan="1" rowspan="1">Structure</th>
                            <th align="center" colspan="1" rowspan="1">Inhibition at 10&#x00b5;M</th>
                            <th align="center" colspan="1" rowspan="1">Viability at 10&#x00b5;M</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Amodiaquine</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T1.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">97.67&#x00b1; 10.62%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">87.71&#x00b1; 1.00%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">Chloroquine</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T2.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">92.16&#x00b1; 6.23%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">106.26&#x00b1; 1.24%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2NH2Q</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T3.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">89.74&#x00b1; 6.53%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">81.10&#x00b1; 2.09%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2PentQ</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T4.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-6.39&#x00b1; 9.15%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">103.48&#x00b1; 0.99%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2OHQ</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T5.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">89.69&#x00b1; 4.09%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">31.15&#x00b1; 1.27%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2COOHQ</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T6.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">30.58&#x00b1; 6.15%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">88.54&#x00b1; 1.54%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2CNQ</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T7.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">3.07&#x00b1; 8.34%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">87.95&#x00b1; 3.63</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2PQSel</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T8.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">10.85&#x00b1; 32.36%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">97.61&#x00b1; 2.06%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2QPOH</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T9.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-113.56&#x00b1; 92.5%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">88.33&#x00b1; 3.26%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2Q16OH</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T10.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-123.88&#x00b1; 30.63%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">74.05&#x00b1; 0.75%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2Qi15</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T11.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">93.27&#x00b1; 4.94%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">109.52&#x00b1; 0.25%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">2QQ</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T12.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">74.33&#x00b1; 13.45%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">57.31&#x00b1; 0.29%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">XF906</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T13.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">0.21&#x00b1; 20.27%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">104.49&#x00b1; 1.65%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">BS460</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T14.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">4.04&#x00b1; 44.15%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">107.53&#x00b1; 0.59%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD1</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T15.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">90.49&#x00b1; 8.32%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">59.69&#x00b1; 0.03%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD2</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T16.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">80.77&#x00b1; 1.38%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">77.05&#x00b1; 4.78%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD3</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T17.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-156.04&#x00b1; 97.28%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">105.49&#x00b1; 2.54%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD4</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T18.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">49.7&#x00b1; 1.17%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">90.09&#x00b1; 1.64%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD5</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T19.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-66.45&#x00b1; 17.78%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">51.44&#x00b1; 1.31%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MBN111</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T20.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-48.86&#x00b1; 87.76%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">42.50&#x00b1; 4.97%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MBN132</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T21.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-10.40&#x00b1; 57.69%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">104.57&#x00b1; 1.39%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MBN91</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T22.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">81.81&#x00b1; 8.80%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">43.52&#x00b1; 0.73%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">KHD291</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T23.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-68.13&#x00b1; 58.12%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">71.17&#x00b1; 0.12%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">KHD288</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T24.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-8.41&#x00b1; 60.44%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">62.68&#x00b1; 0.72%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MBN115</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T25.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-400.96&#x00b1; 223.28%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">77.08&#x00b1; 0.93</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MD823</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T26.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">76.25&#x00b1; 3.16%?</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">58.86&#x00b1; 1.59%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">FZ49</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T27.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">21.83&#x00b1; 28.39%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">72.72&#x00b1; 1.22%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD6</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T28.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-8.49&#x00b1; 18.58%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">96.73&#x00b1; 2.01%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD7</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T29.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-31.56&#x00b1; 80.91%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">90.32&#x00b1; 1.64%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">DD8</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T30.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-74.03&#x00b1; 100.51%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">91.54&#x00b1; 0.41%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">FZ142</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T31.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">63.08&#x00b1; 2.64%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">101.60&#x00b1; 1.39%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">TOF411</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T32.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">71.04&#x00b1; 0.67%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">104.87&#x00b1; 0.60%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">TOF401</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T33.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-44.62&#x00b1; 11.87%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">106.21&#x00b1; 1.08%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MD20</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T34.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-124.41&#x00b1; 93.37%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">108.35&#x00b1; 0.56%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MBN87</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T35.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-17.91&#x00b1; 51.80%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">70.50&#x00b1; 0.78%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">MBN140</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T36.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-68.13&#x00b1; 58.12%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">67.58&#x00b1; 0.73%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">FS48</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T37.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-8.41&#x00b1; 60.44%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">81.47&#x00b1; 0.97%</td>
                        </tr>
                        <tr>
                            <td align="left" colspan="1" rowspan="1" valign="top">AS65</td>
                            <td align="center" colspan="1" rowspan="1">
                                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_T38.gif"/>
                            </td>
                            <td align="left" colspan="1" rowspan="1" valign="top">-10.17&#x00b1; 65.40%</td>
                            <td align="left" colspan="1" rowspan="1" valign="top">77.51&#x00b1; 0.40%</td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn>
                        <p>The column on the left indicates the percent inhibition of trVLP replication using 10 &#x00b5;M, and the column on the right indicates the drug toxicity as assessed using MTT viability.</p>
                        <p>
				
                            <bold>Inhibition:</bold> HEK 293T cells were either transfected with replication machinery plasmids VP30, VP35, NP and Tim-1 (-L) or transfected with all replication machinery plasmids and Tim-1, allowing trVLP entry and replication (+L). Cells were treated with a 10&#x00b5;M final dose of each quinoline derivative, two hours pre-infection. Cells were infected with 100&#x00b5;L of viral stock diluted in 200&#x00b5;L of DMEM with 5% FBS. Cells were lysed, and luciferase activity was assessed 72 hours post-infection. Data represents three biological replicates. Data background corrected and displayed as a percentage of the positive control. Error shown is standard error of the mean. 
                            <bold>Viability:</bold> Drugs were added at a final dose of 10&#x00b5;M, 0.1% DMS. 26 hours later, media was replaced with 100&#x00b5;L of 0.5 mg/mL MTT in media without phenol red. After incubating for two hours at 37&#x00b0;C, 100 &#x03bc;L 10% SDS was added. MTT was fully dissolved at 37&#x00b0;C, then absorbance was read at 570nm. Wells containing no cells served as blanks. Cell viability was determined as percent absorbance of treatment to 0.1% DMSO control. Data shown represents four biological replicates. Data background corrected and displayed as a percentage of the no treatment control. Error shown is the standard error of the mean.</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <sec>
                <title>Drugs</title>
                <p>Chloroquine diphosphate (Chl) was purchased from Abcam (catalog #ab142116) and amodiaquine dihydrochloride dihydrate (Amo) was purchased from Sigma-Aldrich (catalog #A2799) Artesunate (Art) was provided by the BioCIS research group at University Paris-Saclay, France. Novel quinoline derivatives: 2PentQ
                    <sup>
                        <xref ref-type="bibr" rid="ref-11">11</xref>,
                        <xref ref-type="bibr" rid="ref-12">12</xref>
                    </sup>, 2OHQ
                    <sup>
                        <xref ref-type="bibr" rid="ref-12">12</xref>
                    </sup>, 2NH2Q
                    <sup>
                        <xref ref-type="bibr" rid="ref-13">13</xref>
                    </sup>, 2COOHQ
                    <sup>
                        <xref ref-type="bibr" rid="ref-14">14</xref>
                    </sup>, 2CNQ
                    <sup>
                        <xref ref-type="bibr" rid="ref-15">15</xref>,
                        <xref ref-type="bibr" rid="ref-16">16</xref>
                    </sup>, 2QQ
                    <sup>
                        <xref ref-type="bibr" rid="ref-17">17</xref>
                    </sup>, 2Qi15
                    <sup>
                        <xref ref-type="bibr" rid="ref-18">18</xref>
                    </sup>, 2Q16OH
                    <sup>
                        <xref ref-type="bibr" rid="ref-18">18</xref>
                    </sup>, 2QPOH
                    <sup>
                        <xref ref-type="bibr" rid="ref-19">19</xref>
                    </sup>, 2PQSel
                    <sup>
                        <xref ref-type="bibr" rid="ref-11">11</xref>
                    </sup>, DD1
                    <sup>
                        <xref ref-type="bibr" rid="ref-20">20</xref>
                    </sup>, DD2
                    <sup>
                        <xref ref-type="bibr" rid="ref-21">21</xref>
                    </sup>, DD3 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, DD4, (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, DD5 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, MBN111
                    <sup>
                        <xref ref-type="bibr" rid="ref-20">20</xref>
                    </sup>, MBN132
                    <sup>
                        <xref ref-type="bibr" rid="ref-20">20</xref>
                    </sup>, MBN91
                    <sup>
                        <xref ref-type="bibr" rid="ref-20">20</xref>
                    </sup>, KHD291
                    <sup>
                        <xref ref-type="bibr" rid="ref-23">23</xref>
                    </sup>, KHD288
                    <sup>
                        <xref ref-type="bibr" rid="ref-23">23</xref>
                    </sup>, MBN115 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, MD823 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, FZ49
                    <sup>
                        <xref ref-type="bibr" rid="ref-24">24</xref>
                    </sup>, DD6
                    <sup>
                        <xref ref-type="bibr" rid="ref-24">24</xref>
                    </sup>, DD7 (unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, DD8 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, FZ142
                    <sup>
                        <xref ref-type="bibr" rid="ref-24">24</xref>
                    </sup>, TOF411
                    <sup>
                        <xref ref-type="bibr" rid="ref-25">25</xref>
                    </sup>, TOF401
                    <sup>
                        <xref ref-type="bibr" rid="ref-25">25</xref>
                    </sup>, MD20 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, MBN87
                    <sup>
                        <xref ref-type="bibr" rid="ref-20">20</xref>
                    </sup>, MBN140
                    <sup>
                        <xref ref-type="bibr" rid="ref-20">20</xref>
                    </sup>, FS48 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, AS65 (Desma&#x00eb;le unpublished; see 
                    <italic toggle="yes">Extended data</italic>)
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>, XF906
                    <sup>
                        <xref ref-type="bibr" rid="ref-17">17</xref>
                    </sup> and BS460
                    <sup>
                        <xref ref-type="bibr" rid="ref-11">11</xref>
                    </sup> were synthesized at University Paris-Saclay, France. Among them, 2PQsel and 2OHQ have exhibited 
                    <italic toggle="yes">in vitro</italic> and 
                    <italic toggle="yes">in vivo</italic> activities against the parasite 
                    <italic toggle="yes">Leishmania</italic> spp.
                    <sup>
                        <xref ref-type="bibr" rid="ref-26">26</xref>
                    </sup>.</p>
            </sec>
            <sec>
                <title>Cell culture</title>
                <p>HEK-293T (American Type Culture Collection; ATCC, Rockville, USA) were grown in polystyrene coated, 75 cm
                    <sup>2</sup> flasks (Sarstedt) in 15 mL of Dulbecco&#x2019;s Modified Eagle Medium (DMEM) containing 10% FBS at 5% CO
                    <sub>2</sub> atmosphere and 37&#x00b0;C. Cells were harvested by washing using phosphate-buffered saline, followed by incubation with 2mL of trypsin/EDTA for 5 minutes in 5% CO
                    <sub>2</sub> atmosphere at 37&#x00b0;C.</p>
            </sec>
            <sec>
                <title>trVLP infection</title>
                <p>To evaluate the efficacy of quinoline compounds of possible inhibition of Ebola virus, a replication competent mini-genome system developed by Hoenen 
                    <italic toggle="yes">et al.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>
                    </sup> was adopted. Transcription and replication competent viral-like particles (trVLP) are used to model the Ebola virus lifecycle. Within the trVLPs resides, a mini-genome containing structural viral proteins (VP24, VP40, and GP1,2) with the addition of a luciferase reporter gene. To facilitate viral replication, target cells (HEK-293T) are transfected with expression plasmids containing the remaining Ebola replication machinery proteins (VP30, VP35, NP, and L) 24 hours prior to infection. This model represents the most comprehensive lifecycle model available while still being able to be conducted in a biosafety level 2 facility
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>&#x2013;
                        <xref ref-type="bibr" rid="ref-31">31</xref>
                    </sup>.</p>
                <p>As described by Hoenen 
                    <italic toggle="yes">et al.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>
                    </sup>, producer HEK-293T cells were seeded at 2.5 million cells/mL into 10cm Petri dishes in 10mL of DMEM containing 10% FBS at 5% CO
                    <sub>2</sub> atmosphere and 37&#x00b0;C. After 24 hours, cells were transfected with expression plasmids for the Ebola tetracistronic minigenome, virus replication machinery proteins, and bacteriophage T7 polymerase. The plasmids used have been previously described elsewhere
                    <sup>
                        <xref ref-type="bibr" rid="ref-29">29</xref>
                    </sup> and were: tetracistronic minigenome; p4cis-vRNA-Rluc, T7 polymerase; pCAGGS-T7, viral protein 30; pCAGGS-VP30, viral protein 35;pCAGGS-VP35, viral NP; pCAGGS-NP, viral polymerase L; pCAGGS-L. All transfections were carried out using the calcium phosphate method (CalPhos Mammalian Transfection Kit, Clontech Laboratories; catalog #631312). Plasmids are described in Hoenen 
                    <italic toggle="yes">et al.</italic>
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>
                    </sup>. At 24 hours post-transfection, media was replaced with 15 mL of DMEM with 5% FBS. trVLPs containing supernatants were collected after 72 hours and stored at -80&#x00b0;C.</p>
            </sec>
            <sec>
                <title>Drug screen</title>
                <p>To assess the efficacy of compounds for inhibition of viral replication 
                    <italic toggle="yes">in vitro</italic>, 40,000 293T cells, quantified using a hemocytometer, were seeded in 400&#x00b5;L of DMEM containing 10% FBS. After 24 hours, seeding cells were transfected with replication machinery expression plasmids as well as the cellular Ebola virus attachment factor Tim-1 (plasmid pCAGGS-Tim1) using the CalPhos Mammalian Transfection Kit (Clontech Laboratories; catalog #631312)
                    <sup>
                        <xref ref-type="bibr" rid="ref-27">27</xref>
                    </sup>. 24 hours following transfection, media was removed, followed by the addition of 300&#x00b5;L DMEM with 5% FBS. To this, 6&#x00b5;L of 100X drug stock prepared in 10% DMSO w/w was added. Two hours post-treatment, 100&#x00b5;L of viral stock diluted in 200&#x00b5;L of DMEM with 5% FBS, warmed to 37&#x00b0;C, was added to cells. The following day, media was replaced with 800&#x00b5;L of DMEM with 5% FBS. 72 hours post-infection, media was removed and cells were lysed in 200&#x00b5;L of 1x Renila Luciferase Assay Lysis Buffer (Renilla Luciferase Assay System, Promega; catalog #E2820). Luciferase activity in 20&#x00b5;L of lysate was measured using a Luminoskan Ascent microplate luminometer (Thermo Electron) after the addition of 100&#x00b5;L of Luciferase Assay Substrate diluted in Assay Buffer (Renilla Luciferase Assay System, Promega; catalog #E2820).</p>
            </sec>
            <sec>
                <title>MTT</title>
                <p>Cells were seeded into 96-well plates at a density to mimic day two (post-transfection) stage (30% confluent). Drugs were added to the final dose, 0.1% DMSO, and 26 hours later, media was replaced with 100 &#x03bc;L 0.5 mg/mL 3-(4,5-dimethylthiazol-2-Yl)-2,5-diphenyltetrazolium bromide (MTT) in media without phenol red. After incubating for two hours at 37&#x00b0;C, 100&#x03bc;L 10% SDS was added. MTT was fully dissolved at 37&#x00b0;C, then absorbance was read at 570nm using a Biotech Epoch 2 spectrophotometer. Wells containing no cells served as blanks. Cell viability was determined as a percentage of absorbance of the background-corrected 0.1% DMSO treatment control.</p>
            </sec>
            <sec>
                <title>Statistics</title>
                <p>Means were compared using the two-tailed, paired Student&#x2019;s t-test (assuming equal variances) using Microsoft Excel, version 2016. A p-value &#x2264;0.05 was considered significant. Error bars for 
                    <xref ref-type="table" rid="T1">Table 1</xref> infection data are the range for n=2.</p>
            </sec>
        </sec>
        <sec sec-type="results">
            <title>Results</title>
            <p>To assess the ability of quinolines to inhibit Ebola virus infection, we employed an established mini-genome model of Ebola replication, trVLP, allowing us to work under biosafety containment level 2 (CL 2) conditions
                <sup>
                    <xref ref-type="bibr" rid="ref-27">27</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-31">31</xref>
                </sup>.</p>
            <p>In our first series of tests, the ability of amodiaquine and chloroquine to inhibit 
                <italic toggle="yes">in vitro</italic> infection of Ebola virus replication was tested (
                <xref ref-type="fig" rid="f1">Figure 1</xref>). Following transfection with the required replication machinery and attachment receptor expression plasmids, HEK-293T cells were treated with the drugs at a concentration of 10 &#x00b5;M two hours pre-infection. Luciferase activity was measured 72 hours post-infection
                <sup>
                    <xref ref-type="bibr" rid="ref-22">22</xref>
                </sup>. Both amodiaquine and chloroquine demonstrated significant reductions in luciferase activity, indicating inhibited viral transcription and replication
                <sup>
                    <xref ref-type="bibr" rid="ref-32">32</xref>
                </sup>. Following these findings, dose-response experiments for amodiaquine and chloroquine were conducted. Inhibition activity was assessed at concentrations ranging from 10 &#x00b5;M to 0.31 &#x00b5;M (
                <xref ref-type="fig" rid="f2">Figure 2A and 2B</xref>). Amodiaquine exhibited a half maximal inhibitory concentration (IC
                <sub>50</sub>) of 1.45 &#x00b5;M, while chloroquine exhibited an IC
                <sub>50</sub> of 3.95 &#x00b5;M. Cellular toxicity for both amodiaquine and chloroquine was measured using an MTT viability assay (
                <xref ref-type="fig" rid="f2">Figure 2A and 2B</xref>) to quantify drug toxicity along the concentration response
                <sup>
                    <xref ref-type="bibr" rid="ref-22">22</xref>
                </sup>.</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Amodiaquine and chloroquine inhibit trVLP replication.</title>
                    <p>293T cells were either transfected with replication machinery plasmids VP30, VP35, NP and Tim-1 (-L) or transfected with all replication machinery plasmids and Tim-1, allowing trVLP entry and replication (+L). Cells were treated with either 10&#x00b5;M amodiaquine or chloroquine two hours pre-infection or received no treatment. Cells were infected with 100&#x00b5;L of viral stock diluted in 200&#x00b5;L of DMEM with 5% FBS. Cells were lysed, and luciferase activity assessed 72 hours post-infection. Data shown represents four biological replicates. Data background corrected and displayed as a percentage of the positive control. Error bars shown are the standard error of the mean. Results from drug treatments were statistically compared with the (+) control group. * Denotes a p-value &lt;0.05.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_figure1.gif"/>
            </fig>
            <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                <label>Figure 2. </label>
                <caption>
                    <title>Chloroquine, amodiaquine and 2NH2Q inhibit trVLP in a dose dependent manor.</title>
                    <p>

                        <bold>Circular markers, solid line:</bold> 293T cells were either transfected with replication machinery plasmids VP30, VP35, NP and Tim-1 (-L) or transfected with all replication machinery plasmids and Tim-1, allowing trVLP entry and replication (+L). Cells were treated with either amodiaquine, chloroquine or 2NH2Q at concentrations of 10, 5, 2.5, 1.25, 0.625, or 0.31&#x00b5;M, two hours pre-infection. Cells were infected with 100&#x00b5;L of viral stock diluted in 200&#x00b5;L of DMEM with 5% FBS. Cells were lysed, and luciferase activity assessed 72 hours post-infection. Data shown represents four biological replicates. Data background corrected and displayed as a percentage of the positive control. Error bars shown are the standard error of the mean. 
                        <bold>Square markers, dashed line:</bold> 293T cells were seeded to mimic day two (post-transfection) stage (30% confluency). Drugs were added at a final dose of 0.47, 0.94, 1.88, 3.75, 7.5, 15, or 30 &#x00b5;M, 0.1% DMS. 26 hours later, media was replaced with 100&#x00b5;L of 0.5 mg/mL MTT in media without phenol red. After incubating for two hours at 37&#x00b0;C, 100 &#x03bc;L 10% SDS was added. MTT was fully dissolved at 37&#x00b0;C then absorbance was read at 570nm. Wells containing no cells served as blanks. Cell viability was determined as a percentage of the absorbance of treatment to 0.1% DMSO control. Data shown represents three biological replicates. Data background corrected and displayed as a percentage of the no treatment control. Error bars shown are the standard error of the mean.</p>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://f1000research-files.f1000.com/manuscripts/24661/92fcbc57-d6fc-4d54-8dad-37f722bc8c66_figure2.gif"/>
            </fig>
            <p>To rapidly assess the inhibitory ability of the 36 novel quinoline derivatives (
                <xref ref-type="table" rid="T1">Table 1</xref>), drugs were screened at a concentration of 10 &#x00b5;M as described above, with drug treatments occurring two hours pre-infection. From these tests, 2OHQ
                <sup>
                    <xref ref-type="bibr" rid="ref-12">12</xref>
                </sup>, 2NH2Q
                <sup>
                    <xref ref-type="bibr" rid="ref-13">13</xref>
                </sup>, 2QQ
                <sup>
                    <xref ref-type="bibr" rid="ref-17">17</xref>
                </sup>, 2Qi15
                <sup>
                    <xref ref-type="bibr" rid="ref-18">18</xref>
                </sup>, MD823, TOF411, DD2, DD1, and MBN91 were identified as having inhibitory activity in our 
                <italic toggle="yes">in vitro</italic> assay (
                <xref ref-type="table" rid="T1">Table 1</xref>). However, due to drug toxicity or availability of synthesized drug, only 2NH2Q was pursued for further study. A dose-response for 2NH2Q was conducted, with inhibition being assessed between 10 &#x00b5;M and 0.31 &#x00b5;M (
                <xref ref-type="fig" rid="f2">Figure 2C</xref>). Results indicated the IC
                <sub>50</sub> of 2NH2Q to be 4.66 &#x00b5;M, slightly higher than either amodiaquine or chloroquine.</p>
        </sec>
        <sec sec-type="discussion">
            <title>Discussion</title>
            <p>As outbreaks of EVD continue to occur, treatment and preventative strategies are urgently needed.
                <bold/>In August 2018, the Ministry of Health of the Democratic Republic of the Congo declared a new outbreak of Ebola virus disease in North Kivu Province. As of January 19, 2019, there have been 636 confirmed cases of EVD and 370 confirmed deaths
                <sup>
                    <xref ref-type="bibr" rid="ref-2">2</xref>,
                    <xref ref-type="bibr" rid="ref-7">7</xref>
                </sup>. Previously, it was suggested that anti-malarial drugs may be effective for the treatment of EVD
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>&#x2013;
                    <xref ref-type="bibr" rid="ref-10">10</xref>
                </sup>. In the report, we have provided supporting evidence that antiparasitic drugs can inhibit Ebola virus replication 
                <italic toggle="yes">in vitro,</italic> which could be a breakthrough in fighting EVD if proven by additional studies or clinical trials.</p>
            <p>Quinoline is a heterocyclic aromatic organic compound and is the base structure for many small molecule drugs. Quinoline-based drugs are widely used for the treatment of malarial infections. As their production is cheap, they are easy to synthesize with high yields, and are chemically stable while being readily accessible, quinolines offer many advantages for the treatment of infectious disease in tropical climates, such as the climates found in Africa
                <sup>
                    <xref ref-type="bibr" rid="ref-8">8</xref>,
                    <xref ref-type="bibr" rid="ref-27">27</xref>
                </sup>.</p>
            <p>Our study aimed to test anti-malarial compounds against an Ebola replication model using the previously published trVLP 
                <italic toggle="yes">in vitro</italic> assay, which has been shown to accurately reflect CL4 studies using intact infectious Ebola virus
                <sup>
                    <xref ref-type="bibr" rid="ref-29">29</xref>
                </sup>. We find amodiaquine to be effective at inhibiting Ebola viral replication. Amodiaquine is a useful anti-malarial agent in regions where Ebola virus outbreaks are possible, and this drug has been suggested to help with EVD outbreaks
                <sup>
                    <xref ref-type="bibr" rid="ref-10">10</xref>
                </sup>. We also show using our assay that other antiparasitic malarial drugs can inhibit Ebola virus replication with low cellular toxicity. These include chloroquine, 3/35 novel synthetic quinolines, one termed 2NH2Q, with high efficacy in inhibiting Ebola virus replication and low toxicity, and 4/35 showing moderate efficacy in inhibiting Ebola virus replication while being relatively non-toxic (
                <xref ref-type="table" rid="T1">Table 1</xref>).</p>
            <p>Quinolines, such as amodiaquine or chloroquine, have been used in regions at risk for EVD to prevent malaria and some have stated that use of these compounds is correlated with reduced death from EVD, suggesting that quinolines could be useful as both an anti-malarial and EVD treatment/prevention drug.</p>
            <p>In summary, 38 compounds selected for their antiparasitic activity were evaluated against Ebola virus and their cytotoxicity was also determined. Some of them had antileishmanial activity, such as 2PQsel
                <sup>
                    <xref ref-type="bibr" rid="ref-13">13</xref>
                </sup> and others exhibited antiplasmodial activity, such as chloroquine, amodiaquine and BS460
                <sup>
                    <xref ref-type="bibr" rid="ref-33">33</xref>
                </sup>. The most interesting compounds emerging from viral inhibition and cytotoxicity assays were chloroquine and amodiaquine, with the advantage of chloroquine having no toxicity at 10 &#x00b5;M. From the quinoline series, the most promising compounds were 2Qi15 and 2NH2Q, both of them being 2-substituted quinolines. When studying structure-activity relationships, the presence of an amino group at the extremity of the propylene chain (compound 2NH2Q) allowed a better cell viability (81%) than a hydroxyl group (compound 2OHQ, 31%), despite their similar capacity for viral inhibition (89%). Replacement by a carboxylic group (compound 2COOHQ) strongly reduced the antiviral inhibition but maintained good cell viability. The other substitutions performed on the quinoline scaffold were not really satisfactory in regard to their biological activity.</p>
            <p> Our results support the hypothesis that antiparasitic quinolines active against malaria and leishmaniasis could be efficacious as a treatment for EVD. Further studies are necessary to confirm the utility of quinolines as anti- Ebola virus therapeutics, including consideration of these drugs when designing future Ebola drug trials in Africa.</p>
        </sec>
        <sec>
            <title>Data availability</title>
            <sec>
                <title>Underlying data</title>
                <p>Harvard Dataverse: Inhibition of in vitro Ebola infection by anti-parasite quinoline derivatives. 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.7910/DVN/ONGV6I">https://doi.org/10.7910/DVN/ONGV6I</ext-link>
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>
                </p>
                <p>This project contains the following underlying data:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>- </label>
                        <p>Underlying luciferase and MTT data for 
                            <xref ref-type="fig" rid="f1">Figure 1</xref> and 
                            <xref ref-type="fig" rid="f2">Figure 2</xref> and 
                            <xref ref-type="table" rid="T1">Table 1</xref> (in XLSX format)</p>
                    </list-item>
                    <list-item>
                        <label>- </label>
                        <p>Key to alternative compound names (in XLSX format)</p>
                    </list-item>
                </list>
            </sec>
            <sec>
                <title>Extended data</title>
                <p>Harvard Dataverse: Inhibition of in vitro Ebola infection by anti-parasite quinoline derivatives. 
                    <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.7910/DVN/ONGV6I">https://doi.org/10.7910/DVN/ONGV6I</ext-link>
                    <sup>
                        <xref ref-type="bibr" rid="ref-22">22</xref>
                    </sup>
                </p>
                <p>This project contains the following extended data:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>- </label>
                        <p>Supplemental data.DOCX (details of the synthesis of the unpublished compounds)</p>
                    </list-item>
                </list>
                <p>Data are available under the terms of the 
                    <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/publicdomain/zero/1.0/">Creative Commons Zero "No rights reserved" data waiver</ext-link> (CC0 1.0 Public domain dedication).</p>
            </sec>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments</title>
            <p>We wish to thank Mrs. B. Seon-Meniel (BioCIS) for her help in the preparations of the drugs.</p>
        </ack>
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                    <year>2015</year>;<volume>4</volume>:<fpage>48</fpage>.
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                    <pub-id pub-id-type="doi">10.12688/f1000research.6164.2</pub-id>
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                    <article-title>The effect of some 2-substituted quinolines isolated from 
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        </ref-list>
    </back>
    <sub-article article-type="reviewer-report" id="report64097">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.24661.r64097</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>&#x0160;arlauskas</surname>
                        <given-names>Jonas</given-names>
                    </name>
                    <xref ref-type="aff" rid="r64097a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-4268-1716</uri>
                </contrib>
                <aff id="r64097a1">
                    <label>1</label>Department of Xenobiotics Biochemistry, Institute of Biochemistry, Vilnius University, Vilnius, Lithuania</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>2</day>
                <month>6</month>
                <year>2020</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2020 &#x0160;arlauskas J</copyright-statement>
                <copyright-year>2020</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport64097" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.22352.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>The authors of the current report investigated an 
                <italic>in vitro</italic> activity of 36 anti-parasitic quinoline derivatives against Ebola infection. A study represents a novel, original and important information about significant antiviral activity of selected &#x00a0;quinoline compounds against this dangerous infection. To my mind, the paper is well written, general structure and length of the current manuscipt are fully acceptable and it is recommended to be indexed it in the present form.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Yes</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Medicinal Chemistry, heterocyclic compounds</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report62501">
        <front-stub>
            <article-id pub-id-type="doi">10.5256/f1000research.24661.r62501</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Veljkovic</surname>
                        <given-names>Veljko</given-names>
                    </name>
                    <xref ref-type="aff" rid="r62501a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-1980-0927</uri>
                </contrib>
                <aff id="r62501a1">
                    <label>1</label>Biomed Protection, Galveston, TX, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>27</day>
                <month>5</month>
                <year>2020</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2020 Veljkovic V</copyright-statement>
                <copyright-year>2020</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport62501" related-article-type="peer-reviewed-article" xlink:href="10.12688/f1000research.22352.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>In this article, the authors investigated the repurposing of anti-malarial drugs for the treatment of Ebola virus disease. The presented study of anti-malarial quinolines showed that these compounds effectively inhibit Ebola virus replication in vitro. These results point out anti-parasitic quinoline compounds as a template for the development of novel safe and cheap drugs for the treatment of the Ebola disease. This clearly presented and experimentally well-supported manuscript is suitable for indexing in F1000Research.</p>
            <p>Is the work clearly and accurately presented and does it cite the current literature?</p>
            <p>Yes</p>
            <p>If applicable, is the statistical analysis and its interpretation appropriate?</p>
            <p>Not applicable</p>
            <p>Are all the source data underlying the results available to ensure full reproducibility?</p>
            <p>Yes</p>
            <p>Is the study design appropriate and is the work technically sound?</p>
            <p>Yes</p>
            <p>Are the conclusions drawn adequately supported by the results?</p>
            <p>Yes</p>
            <p>Are sufficient details of methods and analysis provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Reviewer Expertise:</p>
            <p>Bioinformatics</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
    </sub-article>
</article>
