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https://doi.org/10.12688/f1000research.11251.2
Research Article metrics
Revised
Protein sites with more coevolutionary connections tend to evolve slower, while more variable protein families acquire higher coevolutionary connections
[version 2; peer review: 2 approved]
Sapan Mandloi, Saikat Chakrabarti
Peer Reviewers Anna Panchenko; Ramanathan Sowdhamini
  • Funder
  • Council for Scientific and Industrial Research
LATEST VERSION PUBLISHED 07 Jul 2017
https://doi.org/10.12688/f1000research.11718.1
Opinion Article metrics
Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action
[version 1; peer review: 3 approved]
Aleksandra Pawlik, Celia W.G. van Gelder, Aleksandra Nenadic, Patricia M. Palagi, Eija Korpelainen, Philip Lijnzaad, Diana Marek, Susanna-Assunta Sansone, John Hancock, Carole Goble
Peer Reviewers Erin A. Becker; Anelda P. van der Walt and Juan Steyn; Laurent Gatto
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.10962.1
Review metrics
Recent advances in methods to assess the activity of the kinome
[version 1; peer review: 3 approved]
Maria Radu, Jonathan Chernoff
Peer Reviewers Roger Daly; David Adams; Ed Manser
  • Funders
  • Congressionally Directed Medical Research Programs
  • National Cancer Institute
PUBLISHED 26 Jun 2017
https://doi.org/10.12688/f1000research.11823.1
Research Article metrics
Analytical challenges of untargeted GC-MS-based metabolomics and the critical issues in selecting the data processing strategy
[version 1; peer review: 2 approved]
Ting-Li Han, Yang Yang, Hua Zhang, Kai P. Law
Peer Reviewers Feng Zhu; Jianguo Xia
PUBLISHED 22 Jun 2017
https://doi.org/10.12688/f1000research.11837.1
Opinion Article metrics
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
[version 1; peer review: 4 approved, 1 approved with reservations]
L. Larcombe, R. Hendricusdottir, T.K. Attwood, F. Bacall, N. Beard, L.J. Bellis, W.B. Dunn, J.M. Hancock, A. Nenadic, C. Orengo, B. Overduin, S-A Sansone, M. Thurston, M.R. Viant, C.L. Winder, C.A. Goble, C.P. Ponting, G. Rustici
Peer Reviewers Michelle D. Brazas; Patricia M. Palagi; Celia W.G. van Gelder; Nicola J. Mulder; Manuel Corpas
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 21 Jun 2017
https://doi.org/10.12688/f1000research.11407.1
Opinion Article metrics
Four simple recommendations to encourage best practices in research software
[version 1; peer review: 3 approved]
Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutierrez, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll. Gelpí, Simon Gladman, Carole Goble, Montserrat González Ferreiro, Alejandra Gonzalez-Beltran, Philippa C. Griffin, Björn Grüning, Jonas Hagberg, Petr Holub, Rob Hooft, Jon Ison, Daniel S. Katz, Brane Leskošek, Federico López Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola Mulder, Yasset Perez-Riverol, Robert Pergl, Horst Pichler, Bernard Pope, Ferran Sanz, Maria V. Schneider, Victoria Stodden, Radosław Suchecki, Radka Svobodová Vařeková, Harry-Anton Talvik, Ilian Todorov, Andrew Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch
Peer Reviewers Roberto Di Cosmo; Gregory V. Wilson; Stefanie Betz
  • Funders
  • ELIXIR-EXCELERATE
  • EMBL-ABR
  • Netherlands eScience Center
  • CORBEL
  • Software Sustainability Institute
PUBLISHED 13 Jun 2017
https://doi.org/10.12688/f1000research.11429.1
Research Article metrics
Community and Code: Nine Lessons from Nine NESCent Hackathons
[version 1; peer review: 1 approved, 1 approved with reservations]
Arlin Stoltzfus, Michael Rosenberg, Hilmar Lapp, Aidan Budd, Karen Cranston, Enrico Pontelli, Shann Oliver, Rutger A. Vos
Peer Reviewers Eva Amsen; Cameron Neylon
  • Funder
  • National Evolutionary Synthesis Center
PUBLISHED 06 Jun 2017
https://doi.org/10.12688/f1000research.11221.1
Review metrics
Screening and identification of novel biologically active natural compounds
[version 1; peer review: 2 approved]
David Newman
Peer Reviewers Roger G. Linington; Rolf Müller
PUBLISHED 05 Jun 2017
https://doi.org/10.12688/f1000research.10896.1
Review metrics
Recent advances in microbial fermentation for dairy and health
[version 1; peer review: 3 approved]
Daragh Hill, Ivan Sugrue, Elke Arendt, Colin Hill, Catherine Stanton, R Paul Ross
Peer Reviewers Willem M de Vos; Pratyoosh Shukla; Miguel A. Alvarez
  • Funders
  • Science Foundation Ireland
  • JPI Food Processing for Health funded ‘Longlife'
PUBLISHED 26 May 2017
https://doi.org/10.12688/f1000research.9690.1
Review metrics
Nanoparticle-based drug delivery systems: What can they really do in vivo?
[version 1; peer review: 3 approved]
Yi-Feng Wang, Lu Liu, Xue Xue, Xing-Jie Liang
Peer Reviewers Kenneth A. Dawson; Zhen Gu; Xiaoyuan (Shawn) Chen
  • Funders
  • Chinese Academy of Sciences
  • National Distinguished Young Scholars
  • Bureau of International Cooperation, Chinese Academy of Sciences
  • Natural Science Foundation
PUBLISHED 16 May 2017
https://doi.org/10.12688/f1000research.10335.2
Software Tool Article metrics
Revised
Cluster Flow: A user-friendly bioinformatics workflow tool
[version 2; peer review: 3 approved]
Philip Ewels, Felix Krueger, Max Käller, Simon Andrews
Peer Reviewers Alastair R. W. Kerr and Shaun Webb; Stephen Taylor and Jelena Telenius; David R. Powell
  • Funders
  • Science for Life Laboratory
  • National Genomics Infrastructure
  • Babraham Institute
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 02 May 2017
https://doi.org/10.12688/f1000research.10625.1
Review metrics
Inducing death in tumor cells: roles of the inhibitor of apoptosis proteins
[version 1; peer review: 3 approved]
Darren Finlay, Peter Teriete, Mitchell Vamos, Nicholas D. P. Cosford, Kristiina Vuori
Peer Reviewers Craig M Walsh; Domagoj Vucic; Robert G Korneluk and Eric C LaCasse
  • Funder
  • NIH
PUBLISHED 27 Apr 2017
https://doi.org/10.12688/f1000research.10998.1
Review metrics
Recent advances in the management and understanding of macular degeneration
[version 1; peer review: 2 approved]
Sepehr Bahadorani, Michael Singer
Peer Reviewers Jorge G. Arroyo; Ron A. Adelman
PUBLISHED 20 Apr 2017
https://doi.org/10.12688/f1000research.10964.2
Opinion Article metrics
Revised
hackseq: Catalyzing collaboration between biological and computational scientists via hackathon
[version 2; peer review: 2 approved]
hackseq Organizing Committee 2016
Peer Reviewers Kate L. Hertweck; Jiarong Guo
LATEST VERSION PUBLISHED 10 Apr 2017
https://doi.org/10.12688/f1000research.10233.1
Review metrics
New drugs in psychiatry: focus on new pharmacological targets
[version 1; peer review: 3 approved]
Filippo Caraci, Gian Marco Leggio, Salvatore Salomone, Filippo Drago
Peer Reviewers S. J. Enna; Philippe De Deurwaerdère; Andrzej Pilc and Michal Korostynski
PUBLISHED 30 Mar 2017
https://doi.org/10.12688/f1000research.8114.3
Method Article metrics RETRACTED
Revised
RETRACTED:  How blockchain-timestamped protocols could improve the trustworthiness of medical science
[version 3; peer review: 3 approved, 1 not approved]
Greg Irving, John Holden
LATEST VERSION PUBLISHED 30 Mar 2017
https://doi.org/10.12688/f1000research.10476.1
Review metrics
What causes amyotrophic lateral sclerosis?
[version 1; peer review: 3 approved]
Sarah Martin, Ahmad Al Khleifat, Ammar Al-Chalabi
Peer Reviewers Robert P. Bowser; Richard W Orrell; Mamede de Carvalho
PUBLISHED 28 Mar 2017
https://doi.org/10.12688/f1000research.10739.1
Review metrics
Recent advances in understanding spondyloarthritis
[version 1; peer review: 2 approved]
J.S.H. Gaston
Peer Reviewers Denis Poddubnyy; Robert A. Colbert
PUBLISHED 22 Mar 2017
https://doi.org/10.12688/f1000research.10473.2
Method Article metrics
Revised
An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK
[version 2; peer review: 2 approved, 1 approved with reservations]
John M. Hancock, Alf Game, Chris P. Ponting, Carole A. Goble
Peer Reviewers Christine Durinx; Alfonso Valencia; Janet Kelso
  • Funders
  • Medical Research Council
  • Natural Environment Research Council
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 20 Mar 2017
https://doi.org/10.12688/f1000research.11055.1
Research Article metrics
Replication of the principal component analyses of the human genome diversity panel
[version 1; peer review: 1 approved, 1 approved with reservations]
Thomas Charlon, Alessandro Di Cara, Sviatoslav Voloshynovskiy, Jérôme Wojcik
Peer Reviewers Zoltán Kutalik; Michael G. B. Blum
  • Funder
  • European Federation of Pharmaceutical Industries and Associations
PUBLISHED 15 Mar 2017
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