<p>Evaluation of large language models for discovery of gene set function </p>

Mengzhou Hu; Sahar Alkhairy; Ingoo Lee; Rudolf T. Pillich; Robin Bachelder; Trey Ideker; Dexter Pratt

doi:10.7490/f1000research.1119678.1

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Hu M, Alkhairy S, Lee I et al. Evaluation of large language models for discovery of gene set function [version 1; not peer reviewed]. F1000Research 2023, 12:1555 (poster) (https://doi.org/10.7490/f1000research.1119678.1)

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Evaluation of large language models for discovery of gene set function

Mengzhou Hu, Sahar Alkhairy, Ingoo Lee, Rudolf T. Pillich, Robin Bachelder, Trey Ideker¹, Dexter Pratt¹

Published 04 Dec 2023 (https://doi.org/10.7490/f1000research.1119678.1)

Author Affiliations

¹ Department of Medicine, University of California San Diego, San Diego, California, USA

Copyright © 2023 Hu M et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 04 Dec 2023

Evaluation of large language models for discovery of gene set function
[version 1; not peer reviewed]

Mengzhou Hu, Sahar Alkhairy, Ingoo Lee, Rudolf T. Pillich, Robin Bachelder, Trey Ideker¹, Dexter Pratt¹

Author Affiliations

¹ Department of Medicine, University of California San Diego, San Diego, California, USA

Presented at

Pacific Symposium on Biocomputing (PSB), 2024

Abstract

Competing Interests

TI is a co-founder, member of the advisory board, and has an equity interest in Data4Cure and Serinus Biosciences. TI is a consultant for and has an equity interest in Ideaya BioSciences and Light Horse Therapeutics. The terms of these arrangements have been reviewed and approved by UC San Diego in accordance with its conflict of interest policies

Keywords

Large Language Models (LLM), Gene Set Analysis, Automated Gene Set Function Annotation

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