<p>Automated reference genome assembly in Galaxy: 152 species and counting</p>

Delphine Larivière; Linelle Ann Abueg; Nadolina Brajuka; Anthony Bretaudeau; Cristóbal Gallardo-Alba; Björn Grüning; Byung June Ko; Ross Lazarus; Romane Libouban; Alex Ostrovsky; Marc Palmada-Flores; Brandon D. Pickett; Keon Rabbani; Jennifer R. Balacco; Mark Chaisson; Haoyu Cheng; Joanna Collins; Alexandra Denisova; Olivier Fedrigo; Guido Roberto Gallo; Alice Maria Giani; Grenville MacDonald Gooder; Nivesh Jain; Cassidy Johnson; Heebal Kim; Chul Lee; Tomas  Marques-Bonet; Brian O'Toole; Arang Rhie; Simona Secomandi; Marcella Sozzoni; Tatiana Tilley; Marcela  Uliano-Silva; Marius van den Beek; Robert M. Waterhouse; Adam M. Phillippy; Erich D. Jarvis; Michael C. Schatz; Anton Nekrutenko; Giulio Formenti

doi:10.7490/f1000research.1119792.1

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Larivière D, Abueg LA, Brajuka N et al. Automated reference genome assembly in Galaxy: 152 species and counting [version 1; not peer reviewed]. F1000Research 2024, 13:786 (poster) (https://doi.org/10.7490/f1000research.1119792.1)

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Automated reference genome assembly in Galaxy: 152 species and counting

Delphine Larivière¹, Linelle Ann Abueg², Nadolina Brajuka, Anthony Bretaudeau, Cristóbal Gallardo-Alba, Björn Grüning, Byung June Ko, Ross Lazarus, Romane Libouban, Alex Ostrovsky, Marc Palmada-Flores, Brandon D. Pickett, Keon Rabbani, Jennifer R. Balacco, Mark Chaisson, Haoyu Cheng, Joanna Collins, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert M. Waterhouse, Adam M. Phillippy, Erich D. Jarvis, Michael C. Schatz, Anton Nekrutenko, Giulio Formenti

Published 09 Jul 2024 (https://doi.org/10.7490/f1000research.1119792.1)

Author Affiliations

¹ Eberly College of Science, The Pennsylvania State University, University Park, Pennsylvania, USA
² Vertebrate Genome Lab, The Rockefeller University, New York, New York, USA

Copyright © 2024 Larivière D et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 09 Jul 2024

Automated reference genome assembly in Galaxy: 152 species and counting
[version 1; not peer reviewed]

Author Affiliations

¹ Eberly College of Science, The Pennsylvania State University, University Park, Pennsylvania, USA
² Vertebrate Genome Lab, The Rockefeller University, New York, New York, USA

Presented at

Galaxy Community Conference (GCC), 2024

Abstract

Competing Interests

No competing interests were disclosed

Keywords

genome assembly, long reads, galaxy

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