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Desvillechabrol D, Bouchier C, Cokelaer T and Kennedy S. Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis [version 1; not peer reviewed]. F1000Research 2016, 5:1767 (poster) (https://doi.org/10.7490/f1000research.1112656.1)
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Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis

Dimitri Desvillechabrol1, Christiane Bouchier, Thomas Cokelaer1, Sean Kennedy
Author Affiliations
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Published 20 Jul 2016

Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis

[version 1; not peer reviewed]

Dimitri Desvillechabrol1, Christiane Bouchier, Thomas Cokelaer1, Sean Kennedy
Author Affiliations
1 Pasteur Institute, Paris, France
Presented at
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) Annual Symposium 2016
Abstract
Competing Interests

No competing interests were disclosed

Keywords
NGS, variant calling, coverage, snakemake, python, pipelines, taxonomy, kraken
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