<p>The ENCODE Annotation Pipeline: Standard analyses for ChIP-seq, RNA-seq, DNase-seq, and whole-genome bisulfite experiments</p>

J Seth Strattan; Timothy R Dreszer; Ben C Hitz; Esther T Chan; Jean M Davidson; Idan Gabdank; Jason A Hilton; Cricket A Sloan; Zhiping Weng; Anshul Kundaje; J Michael Cherry

doi:10.7490/f1000research.1113977.1

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Strattan JS, Dreszer TR, Hitz BC et al. The ENCODE Annotation Pipeline: Standard analyses for ChIP-seq, RNA-seq, DNase-seq, and whole-genome bisulfite experiments [version 1; not peer reviewed]. F1000Research 2017, 6:554 (poster) (https://doi.org/10.7490/f1000research.1113977.1)

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The ENCODE Annotation Pipeline: Standard analyses for ChIP-seq, RNA-seq, DNase-seq, and whole-genome bisulfite experiments

J Seth Strattan¹, Timothy R Dreszer, Ben C Hitz, Esther T Chan, Jean M Davidson, Idan Gabdank, Jason A Hilton, Cricket A Sloan, Zhiping Weng, Anshul Kundaje, J Michael Cherry

Published 24 Apr 2017 (https://doi.org/10.7490/f1000research.1113977.1)

Author Affiliations

¹ Stanford University, USA

Copyright © 2017 Strattan JS et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 24 Apr 2017

The ENCODE Annotation Pipeline: Standard analyses for ChIP-seq, RNA-seq, DNase-seq, and whole-genome bisulfite experiments
[version 1; not peer reviewed]

J Seth Strattan¹, Timothy R Dreszer, Ben C Hitz, Esther T Chan, Jean M Davidson, Idan Gabdank, Jason A Hilton, Cricket A Sloan, Zhiping Weng, Anshul Kundaje, J Michael Cherry

Author Affiliations

¹ Stanford University, USA

Presented at

10th International Biocuration Conference 2017

Abstract

Competing Interests

No competing interests were disclosed

Keywords

ENCODE, analysis pipelines, annotation, software, cloud, functional genomics, ChIP-seq, RNA-seq, DNase-seq, whole-genome bisulfite, DNAnexus

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