<p>Automated reference genome assembly in Galaxy – An update</p>

Linelle Abueg; Delphine Larivière; Nadolina Brajuka; Cristóbal Gallardo; Marc Palmada Flores; Alex Ostrovsky; Byung June Ko; Björn Grüning; Arang Rhie; Anton Nekrutenko; Brandon D. Pickett; Keon Rabbani; Agostinho Antunes; Jennifer R. Balacco; Mark Chaisson; Haoyu Cheng; Joanna Collins; Melanie Couture; Alexandra Denisova; Olivier Fedrigo; Guido Roberto Gallo; Alice Maria Giani; Grenville MacDonald Gooder; Kathleen Horan; Nivesh Jain; Cassidy Johnson; Heebal Kim; Chul Lee; Tomas Marques-Bonet; Brian O'Toole; Simona Secomandi; Marcella Sozzoni; Tatiana Tilley; Marcela Uliano-Silva; Marius van den Beek; Robert W. Williams; Robert M. Waterhouse; Erich D. Jarvis; Adam M. Phillippy; Michael Schatz; Giulio Formenti

doi:10.7490/f1000research.1119791.1

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Abueg L, Larivière D, Brajuka N et al. Automated reference genome assembly in Galaxy – An update [version 1; not peer reviewed]. F1000Research 2024, 13:784 (slides) (https://doi.org/10.7490/f1000research.1119791.1)

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Automated reference genome assembly in Galaxy – An update

Linelle Abueg¹, Delphine Larivière², Nadolina Brajuka, Cristóbal Gallardo, Marc Palmada Flores, Alex Ostrovsky, Byung June Ko, Björn Grüning, Arang Rhie, Anton Nekrutenko, Brandon D. Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R. Balacco, Mark Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W. Williams, Robert M. Waterhouse, Erich D. Jarvis, Adam M. Phillippy, Michael Schatz, Giulio Formenti

Published 09 Jul 2024 (https://doi.org/10.7490/f1000research.1119791.1)

Author Affiliations

¹ Vertebrate Genome Lab, The Rockefeller University, New York, New York, USA
² Eberly College of Science, The Pennsylvania State University, University Park, Pennsylvania, USA

Copyright © 2024 Abueg L et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 09 Jul 2024

Automated reference genome assembly in Galaxy – An update
[version 1; not peer reviewed]

Author Affiliations

¹ Vertebrate Genome Lab, The Rockefeller University, New York, New York, USA
² Eberly College of Science, The Pennsylvania State University, University Park, Pennsylvania, USA

Presented at

Galaxy Community Conference (GCC), 2024

Abstract

Competing Interests

No competing interests were disclosed

Keywords

genome assembly, long reads, galaxy

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