<p><i>Galaxy Ecology: A new "2 step approach" to contribute source code for Galaxy (re)users </i>(from raw data to operational indicators through essential variables)</p>

Arhur Barreau; Marie Jossé; Pauline Seguineau; Jean  Le Cras; Elouan  Le Mestric; Olivier Norvez; Francis Clément; Nicolas Buisine; Jian-Sheng Sun; Coline Royaux; Yvan  Le Bras

doi:10.7490/f1000research.1120345.1

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Barreau A, Jossé M, Seguineau P et al. Galaxy Ecology: A new "2 step approach" to contribute source code for Galaxy (re)users (from raw data to operational indicators through essential variables) [version 1; not peer reviewed]. F1000Research 2025, 14:1090 (slides) (https://doi.org/10.7490/f1000research.1120345.1)

NOTE: it is important to ensure the information in square brackets after the title is included in this citation.

Galaxy Ecology: A new "2 step approach" to contribute source code for Galaxy (re)users (from raw data to operational indicators through essential variables)

Arhur Barreau, Marie Jossé, Pauline Seguineau, Jean Le Cras, Elouan Le Mestric, Olivier Norvez, Francis Clément, Nicolas Buisine, Jian-Sheng Sun, Coline Royaux, Yvan Le Bras¹

Published 13 Oct 2025 (https://doi.org/10.7490/f1000research.1120345.1)

Author Affiliations

¹ Museum National d'Histoire Naturelle, Paris, Île-de-France, France

Copyright © 2025 Barreau A et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 13 Oct 2025

Galaxy Ecology: A new "2 step approach" to contribute source code for Galaxy (re)users (from raw data to operational indicators through essential variables)
[version 1; not peer reviewed]

Arhur Barreau, Marie Jossé, Pauline Seguineau, Jean Le Cras, Elouan Le Mestric, Olivier Norvez, Francis Clément, Nicolas Buisine, Jian-Sheng Sun, Coline Royaux, Yvan Le Bras¹

Author Affiliations

¹ Museum National d'Histoire Naturelle, Paris, Île-de-France, France

Presented at

European Galaxy Days

Competing Interests

No competing interests were disclosed

Keywords

Galaxy Ecology, Antarctic conservation, essential variables, biodiversity data analysis, two-step approach, Jupyter Notebook, Jupytool, batch execution, Galaxy workflows, conda recipes, Biocontainers, Galaxy tool XML, FAIR practices, environmental indicators, ecology.usegalaxy.eu, automation, reproducibility, performance and dependency management

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Galaxy Ecology: A new "2 step approach" to contribute source code for Galaxy (re)users (from raw data to operational indicators through essential variables)

Galaxy Ecology: A new "2 step approach" to contribute source code for Galaxy (re)users (from raw data to operational indicators through essential variables) [version 1; not peer reviewed]

Terms relating to user comments

Galaxy Ecology: A new "2 step approach" to contribute source code for Galaxy (re)users (from raw data to operational indicators through essential variables)
[version 1; not peer reviewed]