<p>Simple and secure credential handling for tools in Galaxy</p>

Alireza Heidari; Arash Kadkhodaei; David Lopez; Bjoern Gruening

doi:10.7490/f1000research.1120347.1

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Heidari A, Kadkhodaei A, Lopez D and Gruening B. Simple and secure credential handling for tools in Galaxy [version 1; not peer reviewed]. F1000Research 2025, 14:1092 (slides) (https://doi.org/10.7490/f1000research.1120347.1)

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Simple and secure credential handling for tools in Galaxy

Alireza Heidari¹, Arash Kadkhodaei, David Lopez, Bjoern Gruening

Published 13 Oct 2025 (https://doi.org/10.7490/f1000research.1120347.1)

Author Affiliations

¹ Albert-Ludwigs-Universitat Freiburg Technische Fakultat, Freiburg, Baden-Württemberg, Germany

Copyright © 2025 Heidari A et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 13 Oct 2025

Simple and secure credential handling for tools in Galaxy
[version 1; not peer reviewed]

Alireza Heidari¹, Arash Kadkhodaei, David Lopez, Bjoern Gruening

Author Affiliations

¹ Albert-Ludwigs-Universitat Freiburg Technische Fakultat, Freiburg, Baden-Württemberg, Germany

Presented at

European Galaxy Days

Competing Interests

No competing interests were disclosed

Keywords

Galaxy, credentials, secrets, variables, tool XML declarations, encrypted vault, runtime injection, environment variables, workflow integration, tool execution blocking, secure storage, external services, admin overhead reduction, user preferences

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