<p>Modern genome browsing in Galaxy with JBrowse2</p>

Anthony Bretaudeau

doi:10.7490/f1000research.1120353.1

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Bretaudeau A. Modern genome browsing in Galaxy with JBrowse2 [version 1; not peer reviewed]. F1000Research 2025, 14:1098 (slides) (https://doi.org/10.7490/f1000research.1120353.1)

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Modern genome browsing in Galaxy with JBrowse2

Anthony Bretaudeau¹

Published 13 Oct 2025 (https://doi.org/10.7490/f1000research.1120353.1)

Author Affiliations

¹ Institut de Recherche en Informatique et Systemes Aleatoires, Rennes, Brittany, France

Copyright © 2025 Bretaudeau A. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 13 Oct 2025

Modern genome browsing in Galaxy with JBrowse2
[version 1; not peer reviewed]

Anthony Bretaudeau¹

Author Affiliations

¹ Institut de Recherche en Informatique et Systemes Aleatoires, Rennes, Brittany, France

Presented at

European Galaxy Days

Competing Interests

No competing interests were disclosed

Keywords

Galaxy, JBrowse2, genome browsers, React framework, static HTML/JS, efficient indexing, FASTA genomes, GFF indexing, Trix index, custom tracks, styling options, metadata, feature details panel, data sources, synteny, non-linear views, plugin store, MAF plugin, performance improvements, reduced carbon footprint, Apollo3, manual annotation curation, GTN, tutorials, EBP

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