<p>Automating galaxy tool management using templated repository</p>

Martin Čech

doi:10.7490/f1000research.1120355.1

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Čech M. Automating galaxy tool management using templated repository [version 1; not peer reviewed]. F1000Research 2025, 14:1100 (slides) (https://doi.org/10.7490/f1000research.1120355.1)

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Automating galaxy tool management using templated repository

Martin Čech¹

Published 13 Oct 2025 (https://doi.org/10.7490/f1000research.1120355.1)

Author Affiliations

¹ CESNET, Prague, Prague, Czech Republic

Copyright © 2025 Čech M. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 13 Oct 2025

Automating galaxy tool management using templated repository
[version 1; not peer reviewed]

Martin Čech¹

Author Affiliations

¹ CESNET, Prague, Prague, Czech Republic

Presented at

European Galaxy Days

Competing Interests

No competing interests were disclosed

Keywords

Galaxy, tool management, templated repository, automation, GitHub workflows, YAML configuration, Tool Shed tools, interactive tools, data manager tools, migrated tools, tool panel section ordering, Makefile scripts, CI for tool updates, scheduled installations, user-defined tools, instance-specific metadata

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