<p>Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic variant detection</p>

Josh Stuart; Paul Boutros; Anna Ying-Wah Lee; Kyle Ellrott; Adam Margolin; Kristen Dang; Kathleen Houlahan; Christopher Bare; Justin Guinney; Shadrielle Espiritu; Yin Hu; Thea Norman; Adam Ewing; Lincoln Stein; Cristian Caloian; Takafumi Yamaguchi; Stephen Friend; Gustavo Stolovitzky; Michael Kellen; Bruce Hoff

doi:10.7490/f1000research.1111147.1

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Stuart J, Boutros P, Lee AYW et al. Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic variant detection [version 1; not peer reviewed]. F1000Research 2015, 4:1444 (slides) (https://doi.org/10.7490/f1000research.1111147.1)

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Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic variant detection

Josh Stuart¹, Paul Boutros², Anna Ying-Wah Lee, Kyle Ellrott, Adam Margolin, Kristen Dang, Kathleen Houlahan, Christopher Bare, Justin Guinney, Shadrielle Espiritu, Yin Hu, Thea Norman, Adam Ewing, Lincoln Stein, Cristian Caloian, Takafumi Yamaguchi, Stephen Friend, Gustavo Stolovitzky, Michael Kellen, Bruce Hoff

Published 14 Dec 2015 (https://doi.org/10.7490/f1000research.1111147.1)

Author Affiliations

¹ UCSC, USA
² OICR, Canada

Copyright © 2015 Stuart J et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 14 Dec 2015

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic variant detection
[version 1; not peer reviewed]

Author Affiliations

¹ UCSC, USA
² OICR, Canada

Competing Interests

No competing interests were disclosed

Keywords

somatic variants, SNV, SV, structural variant, single nucleotide variant, crowd-sourcing, mutation, cancer, DREAM, ICGC, TCGA

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