<p>Using equivalence classes for differential transcript usage and variant detection in RNA-seq data</p>

Marek Cmero; Breon Schmidt; Paul Ekert; Ian Majewski; Nadia Davidson; Alicia Oshlack

doi:10.7490/f1000research.1118353.1

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Cmero M, Schmidt B, Ekert P et al. Using equivalence classes for differential transcript usage and variant detection in RNA-seq data [version 1; not peer reviewed]. F1000Research 2020, 9:1280 (slides) (https://doi.org/10.7490/f1000research.1118353.1)

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Using equivalence classes for differential transcript usage and variant detection in RNA-seq data

Marek Cmero¹, Breon Schmidt, Paul Ekert, Ian Majewski, Nadia Davidson, Alicia Oshlack

Published 29 Oct 2020 (https://doi.org/10.7490/f1000research.1118353.1)

Author Affiliations

¹ The Peter MacCallum Cancer Centre, Australia

Copyright © 2020 Cmero M et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Published 29 Oct 2020

Using equivalence classes for differential transcript usage and variant detection in RNA-seq data
[version 1; not peer reviewed]

Marek Cmero¹, Breon Schmidt, Paul Ekert, Ian Majewski, Nadia Davidson, Alicia Oshlack

Author Affiliations

¹ The Peter MacCallum Cancer Centre, Australia

Presented at

Australian Bioinformatics & Computational Biology Society (ABACBS) Annual Conference 2020

Abstract

Competing Interests

No competing interests were disclosed

Keywords

RNA-seq, transcriptomics, equivalance classes, fusion detection, variant detection, pseudo-alignment

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