ELIXIR

ELIXIR

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1-20 of 56 ARTICLES
Featured Article
https://doi.org/10.12688/f1000research.24427.1
Research Article metrics
Annotation and curation of human genomic variations: an ELIXIR Implementation Study
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Invited
  • Funders
  • ELIXIR
  • Imperial College London
  • European Molecular Biology Laboratory
PUBLISHED 08 Oct 2020
https://doi.org/10.12688/f1000research.166538.1
Review metrics
White paper: standards for handling and analyzing plant pan-genomes
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Sunil Kumar Sahu; Xiaoming Xie
  • Funders
  • ELIXIR under the call for proposals on Biodiversity, Food Safety and Pathogens
  • Federal Ministry of Education and Research
PUBLISHED 28 Jul 2025
https://doi.org/10.12688/f1000research.158264.3
Method Article metrics
Revised
Using text-mining to measure the scientific impact and legacy of ELIXIR, a distributed research infrastructure for life science data
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Helen M. Berman; Shuichi Kawashima; Alfonso Valencia
  • Funders
  • Italian Ministry for Universities and Research (National Recovery and Resilience Plan M4C2)
  • European Union (Horizon Programmes)
  • ELIXIR, the research infrastructure for life science data
LATEST VERSION PUBLISHED 22 Apr 2025
https://doi.org/10.12688/f1000research.146301.2
Opinion Article metrics
Revised
A research data management (RDM) community for ELIXIR
[version 2; peer review: 2 approved]
Peer Reviewers Jeff Christiansen; Sara El Gebali
  • Funders
  • ELIXIR-CONVERGE: European Union’s Horizon 2020 programme
  • FAIRplus: European Union’s Horizon 2020 programme
LATEST VERSION PUBLISHED 30 Sep 2024
https://doi.org/10.12688/f1000research.153895.1
Opinion Article metrics
From the establishment of a national bioinformatics society to the development of a national bioinformatics infrastructure
[version 1; peer review: 3 approved with reservations]
Peer Reviewers Francis Ouellette; Federico Zambelli; Carol Goble
  • Funder
  • EEA Grants/Norway Grants (Bioinformatics Capacity Building Human Genomics, an RSBI and ELIXIR Norway bilateral project)
PUBLISHED 03 Sep 2024
https://doi.org/10.12688/f1000research.126734.2
Opinion Article metrics
Revised
Systems Biology in ELIXIR: modelling in the spotlight
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Yoram Vodovotz; Herbert Sauro; Ioannis Androulakis
  • Funder
  • EPAnEk-NSRF
LATEST VERSION PUBLISHED 31 May 2024
https://doi.org/10.12688/f1000research.133724.2
Opinion Article metrics
Revised
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity
[version 2; peer review: 3 approved]
Peer Reviewers Patrick Comer; Abigail Benson and Stephen Formel; Cher FY Chow
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 22 May 2024
https://doi.org/10.12688/f1000research.129720.2
Opinion Article metrics
Revised
Ten recommendations for organising bioimaging data for archival
[version 2; peer review: 3 approved, 1 approved with reservations]
Peer Reviewers Sjors Scheres; Kenneth H. L. Ho; Sylvia Emmanuelle Le Dévédec; William T. Katz and Virginia Scarlett
  • Funders
  • EMBL
  • UKRI-MRC with co-funding from UKRI-BBSRC
  • Wellcome Trust
LATEST VERSION PUBLISHED 27 Feb 2024
https://doi.org/10.12688/f1000research.144515.1
Opinion Article metrics
Establishing the ELIXIR Microbiome Community
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Charlie Pauvert; Almut Heinken
  • Funders
  • CnrBiomics
  • Fundação para a Ciência e a Tecnologia
  • ELIXIRxNextGenIT
  • National Research Fund Luxembourg
  • Research Foundation Flanders
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 08 Jan 2024
https://doi.org/10.12688/f1000research.142165.1
Research Article metrics AWAITING PEER REVIEW
A survey into the contribution of regional/national pathogen data platforms and on the resources needed to develop and maintain them
[version 1; peer review: awaiting peer review]
Peer Reviewers Invited
  • Funder
  • Horizon 2020
PUBLISHED 14 Dec 2023
https://doi.org/10.12688/f1000research.74502.2
Opinion Article metrics
Revised
ELIXIR and Toxicology: a community in development
[version 2; peer review: 2 approved]
Peer Reviewers Christopher Southan; Marta Eide
  • Funders
  • Eesti Teadusagentuur
  • Bundesministerium für Bildung und Forschung
  • LIFE programme
  • Miguel Servet
  • Agence Nationale de la Recherche
  • Horizon 2020
  • Stiftelsen Forska Utan Djurförsök
  • Wellcome Trust
  • Umweltbundesamt
  • H2020 Marie Skłodowska-Curie Actions
  • European Regional Development Fund
LATEST VERSION PUBLISHED 03 Oct 2023
https://doi.org/10.12688/f1000research.128167.2
Policy Brief metrics
Revised
The road to success: drawing parallels between 'road' and 'research data' infrastructures to foster understanding between service providers, funders and policymakers
[version 2; peer review: 2 approved]
Peer Reviewers Frédéric Sgard; Silvia Vignetti
  • Funders
  • ELIXIR
  • Horizon 2020
LATEST VERSION PUBLISHED 22 Aug 2023
https://doi.org/10.12688/f1000research.51747.1
Opinion Article metrics
The future of food and nutrition in ELIXIR
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Graham King; Anu Bansal
PUBLISHED 25 Aug 2022
https://doi.org/10.12688/f1000research.108804.2
Opinion Article metrics
Revised
Making European performance and impact assessment frameworks for research infrastructures glocal
[version 2; peer review: 2 approved]
Peer Reviewers Eugénio Campos Ferreira; Enrico Guarini and Marialuisa Lavitrano
  • Funders
  • ELIXIR
  • H2020 Research Infrastructures
  • Foundation for Science and Technology - Portugal
LATEST VERSION PUBLISHED 02 Aug 2022
https://doi.org/10.12688/f1000research.73825.2
Opinion Article metrics
Revised
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR
[version 2; peer review: 2 approved]
Peer Reviewers Donald Hobern; Anders Andersson
  • Funders
  • Grantová Agentura České Republiky
  • Norges Forskningsråd
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • Ministry of Education, Youth and Sports of the Czech Republic
  • Horizon 2020
  • Arcadia Fund
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 01 Aug 2022
https://doi.org/10.12688/f1000research.122312.1
Opinion Article metrics
Community-driven ELIXIR activities in single-cell omics
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Xiao-Yang Zhao; Feng Zhu
  • Funders
  • ELIXIR
  • Knut och Alice Wallenbergs Stiftelse
PUBLISHED 29 Jul 2022
https://doi.org/10.12688/f1000research.109080.2
Opinion Article metrics
Revised
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
[version 2; peer review: 2 approved]
Peer Reviewers Boas Pucker and Alenka Hafner; Micha M. Bayer
  • Funders
  • ELIXIR
  • Bundesministerium für Bildung und Forschung
  • Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 19 May 2022
https://doi.org/10.12688/f1000research.74024.1
Research Article metrics
eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain
[version 1; peer review: 2 approved]
Peer Reviewers Merran Smith; Ishwar Chandramouliswaran
  • Funders
  • Innovative Medicines Initiative
  • Horizon 2020
PUBLISHED 07 Mar 2022
https://doi.org/10.12688/f1000research.54159.1
Opinion Article metrics
Perspectives on automated composition of workflows in the life sciences
[version 1; peer review: 2 approved]
Peer Reviewers Pinar Alper; Rafael Ferreira da Silva
  • Funder
  • European Commission Horizon 2020 Framework Programme
PUBLISHED 07 Sep 2021
https://doi.org/10.12688/f1000research.54071.1
Data Note metrics
Organizing knowledge to enable faster data interpretation in COVID-19 research
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Justin Reese; Keith Hall
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 30 Jul 2021
https://doi.org/10.12688/f1000research.28449.1
Opinion Article metrics
Recommendations for the FAIRification of genomic track metadata
[version 1; peer review: 2 approved]
Peer Reviewers Max Haeussler; Granger Sutton
  • Funders
  • ELIXIR
  • ELIXIR Norway
  • ELIXIR Spain
  • INB
  • EMBL-EBI
PUBLISHED 01 Apr 2021
1-20 of 56 ARTICLES
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