Keywords
ER+ breast cancer, extracellular vesicles, plasma, biomarkers, diagnostic, lymph node involvement, metastases
ER+ breast cancer, extracellular vesicles, plasma, biomarkers, diagnostic, lymph node involvement, metastases
In this new version we removed the interpretation that the biomarkers we found are EV-based as the EV isolation method used is insufficient to purify EVs from other contaminants. Also, it is not intuitive that EVs would be likely to contain a histone (usually confined to the nucleus) or hemoglobin and therefore the biomarkers found are now referred to as “extracellular proteins” and not as “EV-based biomarkers”. We have removed the word “vesicle” from our article title.
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Extracellular vesicles (EVs) are membrane surrounded structures released by different cell types that are involved in cellular communication and are emerging as potential therapeutic and diagnostic targets in cancer1 as in the case of early pancreatic cancer2. Structurally, EVs are contained within a phospholipid bilayer, whose composition is very similar to the cell membrane. EVs carry proteins, nucleic acids (DNA, mRNA, and miRNA), and lipids and are classified into three types: exosomes, ectosomes (microvesicles, MVs) and apoptotic bodies.
Tumor-derived EVs are also critical components for preparing the tumor microenvironment because they enable tumor cells to escape from the immunological surveillance3 and help in the setting of a pre-metastatic niche for the engraftment of detached cancer cells4. Both exosomes and MVs have been extensively studied and attributed various important physiological roles in cancer5,6. For instance, EVs have been found to play an important role in every phase of cancer development from cancer initiation, invasion and metastasis7. For these reasons, EVs are potential therapeutic and diagnostic targets in cancer and EV-derived biomarkers maybe useful for predicting future metastatic development and identify metastasis sites8.
ER+ (estrogen receptor positive) breast cancer (BC) represents 60–80% of all BC cases9,10. Here we describe our preliminary findings exploring the role of tumour derived EVs biomarkers that could ultimately be used as part of a test kit for the detection of early ER+ BC and lymph node involvement.
Plasma samples from 4 control patients (2 adult women and 2 men) which were confirmed as not having any form of BC, ER+ BC metastases, BC1 and BC2 explants EVs, SKBC and parental BC (Lyden lab, WCM, USA). Samples CF37, CF5, CF1, CF25, CF33, CF27 and CF110 were collected at Champalimaud Clinical Centre, Portugal, as part of a study on the role of tumor-derived microvesicles and bone marrow progenitor cells as diagnostic and prognostic biomarkers in advanced BC and inflammatory BC Patients (RECI/BIM-ONC/0201/2012, FCT, Portugal). ER+ BC patient samples were selected based on their stage of disease progression – confirmed by CT-scan and surgery. EVs derived from conditioned media of cells lines SKBr3, MCF7, MDA468, MDA231 and MCF10A were also used in this study (details about these samples can be found in Table 1).
Sample ID | Menopausal status | ER/PR/Her2 status (%) | Metastases pattern | Sample type |
---|---|---|---|---|
CF5 | pre | 100/95/- | LN+ | Plasma |
CF37 | pos | 100/-/- | LN- | Plasma |
CF110 | pos | 100/100/- | Locally advanced | Plasma |
CF1 | pre | 100/100/- | LN, liver | Plasma |
CF25 | pos | 75/25/- | LN, liver, cartilage, skin | Plasma |
CF33 | pos | 100/?/- | LN, liver, bone, skin, lung, brain | Plasma |
CF27 | pos | 100/1/- | LN, lung, bone | Plasma |
SKBC | ? | ? | Multiple metastasis | Plasma |
BC1 | ? | ER+ | Bone | Bone metastasis explant conditioned media |
BC2 | ? | ER+ | Bone | Bone metastasis explant conditioned media |
Parental breast cancer | ? | ? | Primary tumor | Primary breast cancer conditioned media |
SKBr3 (metastatic in mice)22 | ? (43y) | HER2+ | Metastasis | Pleural effussion (ATCC) Conditioned media from cell line culture |
MDA468 (metastatic in mice)23 | ? (51y) | TN (triple-negative) | Metastasis | Pleural effussion (ATCC) Conditioned media from cell line culture |
MDA231 (highly metastatic in mice) | ? (51y) | TN | Metastasis | Pleural effussion (ATCC) Conditioned media from cell line culture |
MCF7 (poorly metastatic in mice) | pos | ER+ | Metastasis | Pleural effussion (ATCC) Conditioned media from cell line culture |
MCF10A | pre | Benign -fibrocystic disease | ------ | Mammary gland; breast (ATCC) Conditioned media from cell line culture |
This study was approved by an Ethics Review Board at Champalimaud Foundation, Portugal. All study patients provided their written, informed consent.
EV purification and analysis were performed at the Lyden lab (WCM) accordingly to Andre et al. 201611. Briefly, plasma was pelleted at 500 × g for 10 min, then the supernatant was centrifuged at 20,000 × g for 20 min. Exosomes were then harvested by centrifugation at 100,000 × g for 70 min. The exosome pellet is resuspended in PBS and collected by ultracentrifugation at 100,000 × g for 70 min. The exosome pellet is resuspended in PBS and then stored at −80°C
Proteomic analysis was performed at the Rockefeller University, Proteomics Center as described in Hamidi et al., 201712. Proteomic analysis was performed with the help of FunRich Program version 3. Only proteins with Mascot scores of approximately 90 or >90 were considered13.
Clinical data on the EVs isolated from BC patient’s plasma samples and cell lines can be found in Table 1. The method used for EV isolation also precipitates lipoproteins and immunocomplexes (IC) which are known possible contaminants14. However, samples submitted for mass spectrometry analysis showed none of the recognised contaminants of high speed centrifugation. In the two patients with early BC (Table 2a), we detected HCG1745306 isoform CRA-a, a protein from the family of alpha type haemoglobins and for the patient with lymph node involvement, we detected histone H1.2 (Table 2 a–b). HCG1745306 isoform CRA-a was only present in the two patients with early BC with Mascot scores of 3208.8 and 3966.5, respectively and absent in all controls and other patient samples.
Also, represented the Mascot scores for each protein in each sample.
b | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
SKBC | BC1 | BC2 | Parental BC | SKBr3 | MDA468 | MDA231 | MCF7 | MCF10A | |||
P16403 Histone H1.2 | 0 | 638.4 | 117.38 | 102.9 | 154.45 | 427.1 | 90.35 | NS | 0 |
Histone H1.2 was also detected in samples from the two patients with bone metastases, a parental primary BC sample and metastatic SKBr-3, MDA468, MDA231 cell lines. However, histone H1.2 was absent from the plasma sample of a patient with multiple metastases, from the non-metastatic MCF7 cell line (a non significant mascot score) and from MCF10A cells EVs (Table 2b). These observation suggests that histone H1.2 might represent a potential marker for LN involvement and metastatic potential. Recent studies suggest histone H1.2 phosphorylation may be useful as a clinical biomarker of breast and other cancers because of its ability to recognize proliferative cell populations. Both MCF7 (expressing an allelic variant A142T) and MDA231, have a greater number of histone H1.2 phosphorylations when compared to MCF10A cell line15. Curiously, phosphorylation of histone H1.2 at S173 increases during the M phase relative to the S phase, suggesting that this event is cell cycle-dependent and may serve as a marker for proliferation of cancer cells during BC invasion16,17. Also, histone H1.2 is a novel component of the nucleolar organizer regions during mitosis18 and H1.2 depletion was observed in a human BC cell line caused cell cycle G1-phase arrest19. Indeed, a higher mitotic index (≥ 7) in primary tumors is significantly associated with LN involvement20 and higher mitotic indices accurately predict axillary LN involvement at operation21.
Our study does suffer from a number of recognised limitations. Firstly, the isolation method used is insufficient to purify EVs from other contaminants. Indeed, the EV literature is quite confusing due, in part, to the over-interpretation of observations from samples prepared using inadequate isolation methods. Secondly, it is not intuitive that EVs would be likely to contain a histone (normally confined to the nucleus) or haemoglobin, therefore our current data does not support the idea that the biomarkers we found are EV-associated and may just represent blood-derived extracellular proteins. Although we only have data for a small number of patients, a strength of our study is that samples were drawn from those with confirmed non-metastatic and metastatic disease at different sites and so are likely to be representative patients.
Nonetheless, our initial observations suggest the possibility that HCG1745306 isoform CRA-a could be used as a potential biomarker for the detection of early ER+ BC. Moreover, histone H1.2 might represent a marker for LN involvement. Further work in a larger cohort of patients clearly needed to refute or confirm these initial findings.
Our early results suggest that blood- derived extracellular biomarkers could represent a means of identifying both patients with early ER+ BC and those in which the disease has spread to the sentinel nodes. Confirmation of these findings in a larger patient cohort might lead to the development of an antibody-antigen based test kit which could be used to provide an instant diagnosis of BC for patients visiting their primary care physician with a suspicious lump, thereby avoid the need for mammography and invasive biopsy.
Dataset 1: The mass spectrometry analysis results from all patient samples 10.5256/f1000research.14129.d19659724
This work is supported by the Foundation of Science and Technology of Portugal [RECI/BIM-ONC/0201/2012], Lyden lab (Weill Cornell Medical College, USA), Champalimaud Foundation Portugal, and Romã Laboratories Ltd.
The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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Competing Interests: No competing interests were disclosed.
Is the work clearly and accurately presented and does it cite the current literature?
Partly
Is the study design appropriate and is the work technically sound?
No
Are sufficient details of methods and analysis provided to allow replication by others?
Yes
If applicable, is the statistical analysis and its interpretation appropriate?
Not applicable
Are all the source data underlying the results available to ensure full reproducibility?
Yes
Are the conclusions drawn adequately supported by the results?
No
References
1. Witwer K, Soekmadji C, Hill A, Wauben M, et al.: Updating the MISEV minimal requirements for extracellular vesicle studies: building bridges to reproducibility. Journal of Extracellular Vesicles. 2017; 6 (1). Publisher Full TextCompeting Interests: No competing interests were disclosed.
Is the work clearly and accurately presented and does it cite the current literature?
Yes
Is the study design appropriate and is the work technically sound?
Partly
Are sufficient details of methods and analysis provided to allow replication by others?
Yes
If applicable, is the statistical analysis and its interpretation appropriate?
I cannot comment. A qualified statistician is required.
Are all the source data underlying the results available to ensure full reproducibility?
Yes
Are the conclusions drawn adequately supported by the results?
Yes
Competing Interests: No competing interests were disclosed.
Alongside their report, reviewers assign a status to the article:
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Version 3 (revision) 10 May 18 |
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Version 2 (revision) 24 Apr 18 |
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Version 1 06 Mar 18 |
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