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https://doi.org/10.12688/f1000research.21796.1
Review metrics
Recent advances in the role of plant metabolites in shaping the root microbiome
[version 1; peer review: 3 approved]
Richard P. Jacoby, Li Chen, Melina Schwier, Anna Koprivova, Stanislav Kopriva
Peer Reviewers Fabrice Roux; Philip Poole; Corné Pieterse
  • Funders
  • Horizon 2020 Marie Curie Sklodowska Action project
  • DFG
  • Humboldt Research Fellowship
PUBLISHED 26 Feb 2020
https://doi.org/10.12688/f1000research.20660.2
Software Tool Article metrics
Revised
microbiomeDASim: Simulating longitudinal differential abundance for microbiome data
[version 2; peer review: 2 approved]
Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson
Peer Reviewers Leo Lahti; Kris Sankaran
LATEST VERSION PUBLISHED 26 Feb 2020
https://doi.org/10.12688/f1000research.18236.1
Opinion Article metrics
BioHackathon 2015: Semantics of data for life sciences and reproducible research
[version 1; peer review: 2 approved]
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
Peer Reviewers Jeremy G. Frey; James P. Balhoff and Gaurav Vaidya
  • Funder
  • National Bioscience Database Center, the Japan Science and Technology Agency (JST)
PUBLISHED 24 Feb 2020
https://doi.org/10.12688/f1000research.21556.2
Software Tool Article metrics
Revised
SNPector: SNP inspection tool for diagnosing gene pathogenicity and drug response in a naked sequence
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Peter T. Habib, Alsamman M. Alsamman, Sameh E. Hassanein, Ghada A. Shereif, Aladdin Hamwieh
Peer Reviewers Fakher Rahim; Ka-Chun Wong; Tim Kacprowski
LATEST VERSION PUBLISHED 20 Feb 2020
https://doi.org/10.12688/f1000research.18959.2
Review metrics
Revised
Recent advances in understanding of attention deficit hyperactivity disorder (ADHD): how genetics are shaping our conceptualization of this disorder
[version 2; peer review: 3 approved]
Tetyana Zayats, Benjamin M Neale
Peer Reviewers Mark Bellgrove; Sarah Kittel-Schneider; Pieter J Hoekstra
  • Funders
  • Gerstner Family Foundation
  • National Institute of Mental Health
LATEST VERSION PUBLISHED 12 Feb 2020
https://doi.org/10.12688/f1000research.22259.1
Method Article metrics
Fluent genomics with plyranges and tximeta
[version 1; peer review: 1 approved, 2 approved with reservations]
Stuart Lee, Michael Lawrence, Michael I. Love
Peer Reviewers Mark Dunning; PuXue Qiao, Ruqian Lyu and Davis J. McCarthy; Mickaël Mendez and Michael M. Hoffman
  • Funders
  • Department of Industry, Innovation, Science, Research and Tertiary Education, Australian Government
  • CSL Behring
  • National Institutes of Health
PUBLISHED 12 Feb 2020
https://doi.org/10.12688/f1000research.22182.1
Systematic Review metrics
A systematic review of non-randomised evaluations of strategies to improve participant recruitment to randomised controlled trials
[version 1; peer review: 2 approved, 2 approved with reservations, 1 not approved]
Heidi R Gardner, Loai Albarquoni, Adel El Feky, Katie Gillies, Shaun Treweek
Peer Reviewers Karen Bracken; Barbara Clyne; Emily Peckham; Geoff K Frampton; Lucy Beasant
  • Funders
  • University of Aberdeen
  • Medical Research Council
PUBLISHED 05 Feb 2020
https://doi.org/10.12688/f1000research.20835.1
Review metrics
The influence of host genetics on the microbiome
[version 1; peer review: 2 approved]
Alexandra Tabrett, Matthew W. Horton
Peer Reviewers Maggie R. Wagner; Rachael E. Antwis
  • Funders
  • ThinkSwiss - swissnex Network
  • Universität Zürich - URPP Evolution in Action
PUBLISHED 05 Feb 2020
https://doi.org/10.12688/f1000research.20510.1
Review metrics
All disease begins in the (leaky) gut: role of zonulin-mediated gut permeability in the pathogenesis of some chronic inflammatory diseases
[version 1; peer review: 3 approved]
Alessio Fasano
Peer Reviewers Xin M Luo; Michael Maes; Arul Jayaraman
  • Funder
  • National Institutes of Health
PUBLISHED 31 Jan 2020
https://doi.org/10.12688/f1000research.20928.1
Review metrics
Precision medicine in inflammatory bowel disease: concept, progress and challenges
[version 1; peer review: 2 approved]
Simon P. Borg-Bartolo, Ray Kiran Boyapati, Jack Satsangi, Rahul Kalla
Peer Reviewers Sunanda Kane; Claudio Fiocchi
PUBLISHED 28 Jan 2020
https://doi.org/10.12688/f1000research.20204.1
Review metrics
Recent advances in modulating the microbiome
[version 1; peer review: 2 approved]
Eamonn M.M Quigley, Prianka Gajula
Peer Reviewers Tom Van de Wiele; Francisco Guarner
  • Funder
  • Hughes Sterling Foundation
PUBLISHED 27 Jan 2020
https://doi.org/10.12688/f1000research.16804.4
Method Article metrics
Revised
Do you cov me? Effect of coverage reduction on metagenome shotgun sequencing studies
[version 4; peer review: 2 approved, 2 not approved]
Federica Cattonaro, Alessandro Spadotto, Slobodanka Radovic, Fabio Marroni
Peer Reviewers Alejandro Sanchez-Flores; José F. Cobo Diaz; Francesco Dal Grande; Marcus Claesson and Shriram Patel
  • Funder
  • Coordinamento Regionale Veneto per la Libertà delle Vaccinazioni
LATEST VERSION PUBLISHED 22 Jan 2020
https://doi.org/10.12688/f1000research.17927.4
Software Tool Article metrics
Revised
Biobtree: A tool to search and map bioinformatics identifiers and special keywords
[version 4; peer review: 2 approved]
Tamer Gur
Peer Reviewers Maxim N. Shokhirev; Samuel Lampa
LATEST VERSION PUBLISHED 20 Jan 2020
https://doi.org/10.12688/f1000research.21508.1
Software Tool Article metrics
Identifying orthologs with OMA: A primer
[version 1; peer review: 2 approved]
Monique Zahn-Zabal, Christophe Dessimoz, Natasha M. Glover
Peer Reviewers Stephanie J. Spielman; Paula Ramos-Silva
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • Swiss Institute of Bioinformatics
PUBLISHED 17 Jan 2020
https://doi.org/10.12688/f1000research.21773.1
Software Tool Article metrics
Pharmosome: an integrative and collective database for exploration and analysis of single nucleotide polymorphisms associated with disease
[version 1; peer review: 2 approved with reservations]
Peter T. Habib, Alsamman M. Alsamman, Sameh E. Hassanein, Kerolos M. Yousef, Aladdin Hamwieh
Peer Reviewers Fuyi Li; Mulin Jun Li
PUBLISHED 10 Jan 2020
https://doi.org/10.12688/f1000research.21797.1
Research Article metrics
Using synthetic datasets to bridge the gap between the promise and reality of basing health-related decisions on common single nucleotide polymorphisms
[version 1; peer review: 1 approved, 1 approved with reservations]
Thomas R. Wood, Nathan Owens
Peer Reviewers Yesim Aydin Son; Oliver Pain
  • Funder
  • Department of Pediatrics, University of Washington
PUBLISHED 30 Dec 2019
https://doi.org/10.12688/f1000research.21568.1
Editorial metrics NOT PEER REVIEWED
BOSC 2019, the 20th annual Bioinformatics Open Source Conference
[version 1; peer review: not peer reviewed]
Nomi L. Harris, Peter J.A. Cock, Christopher J. Fields, Bastian Greshake Tzovaras, Michael Heuer, Karsten Hokamp, Monica Munoz-Torres, Alexander Peltzer, Bastian Rieck, Heather Wiencko, Yo Yehudi
PUBLISHED 20 Dec 2019
https://doi.org/10.12688/f1000research.11622.4
Method Article metrics
Revised
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets
[version 4; peer review: 2 approved]
Malgorzata Nowicka, Carsten Krieg, Helena L. Crowell, Lukas M. Weber, Felix J. Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P. Levesque, Mark D. Robinson
Peer Reviewers Aaron T. L. Lun and John C. Marioni; Greg Finak and Raphael Gottardo
  • Funders
  • Swiss National Science Foundation
  • Swiss Institute of Bioinformatics
  • University of Zurich
LATEST VERSION PUBLISHED 17 Dec 2019
https://doi.org/10.12688/f1000research.20575.1
Review metrics
Recent advances in understanding the phenotypes of osteoarthritis
[version 1; peer review: 2 approved]
Ali Mobasheri, Simo Saarakkala, Mikko Finnilä, Morten A. Karsdal, Anne-Christine Bay-Jensen, Willem Evert van Spil
Peer Reviewers Rik J U Lories; Charles J. Malemud
  • Funders
  • Innovative Medicines Initiative
  • FP7 People: Marie-Curie Actions
  • Lietuvos Mokslo Taryba
  • Seventh Framework Programme
PUBLISHED 12 Dec 2019
https://doi.org/10.12688/f1000research.20633.2
Research Article metrics
Revised
Epitope mapping of an uncertain endogenous antigen implies secretogranin II peptide splicing
[version 2; peer review: 1 approved, 2 approved with reservations]
David R. Howlett, Iain J. Clarke, Russell P. Newton, John E. Hart
Peer Reviewers Michael O. Glocker; Steven D. Shnyder; Alice Sijts
LATEST VERSION PUBLISHED 05 Dec 2019
241-260 of 638 ARTICLES
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