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https://doi.org/10.12688/f1000research.18541.1
Research Article metrics
In silico docking analysis of CCL28 (C-C motif chemokine ligand 28) and astragalin as the potential inhibitor of rheumatoid arthritis
[version 1; peer review: 1 approved, 1 approved with reservations]
Sadaf Noor, Syeda Tahira Qousain, Syed Aun Muhammad
Peer Reviewers Ihsan Ul Haq; Sagarika Biswas
PUBLISHED 20 Mar 2019
https://doi.org/10.12688/f1000research.15140.2
Opinion Article metrics
Revised
Recommendations for the packaging and containerizing of bioinformatics software
[version 2; peer review: 2 approved, 1 approved with reservations]
Bjorn Gruening, Olivier Sallou, Pablo Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes Röst, Timo Sachsenberg, Brian O'Connor, Fábio Madeira, Victoria Dominguez Del Angel, Michael R. Crusoe, Susheel Varma, Daniel Blankenberg, Rafael C. Jimenez, BioContainers Community, Yasset Perez-Riverol
Peer Reviewers Ka Yee Yeung and Daniel Kristiyanto; Monther Alhamdoosh; Evan Floden
  • Funders
  • Horizon 2020
  • National Institutes of Health
LATEST VERSION PUBLISHED 20 Mar 2019
https://doi.org/10.12688/f1000research.17084.1
Review metrics
The Application of Omics Technologies to Study Axon Regeneration and CNS Repair
[version 1; peer review: 3 approved]
Andrea Tedeschi, Phillip G Popovich
Peer Reviewers Melissa R Andrews; Shuxin Li; Simone Di Giovanni
  • Funders
  • Marina Romoli Onlus Association
  • Ray W. Poppleton Endowment
  • The Ohio Sate University Discovery Themes Initiative - Chronic Brain Injury
  • National Institutes of Health
  • Craig H. Neilsen Foundation
PUBLISHED 20 Mar 2019
https://doi.org/10.12688/f1000research.16198.2
Software Tool Article metrics
Revised
scClustViz – Single-cell RNAseq cluster assessment and visualization
[version 2; peer review: 2 approved]
Brendan T. Innes, Gary D. Bader
Peer Reviewers Martin Hemberg and Tallulah Andrews; Michael Steinbaugh
  • Funder
  • Canada First Research Excellence Fund
LATEST VERSION PUBLISHED 12 Mar 2019
https://doi.org/10.12688/f1000research.15613.2
Software Tool Article metrics
Revised
EpiLog: A software for the logical modelling of epithelial dynamics
[version 2; peer review: 3 approved]
Pedro L. Varela, Camila V. Ramos, Pedro T. Monteiro, Claudine Chaouiya
Peer Reviewers Stefano Nichele; Alejandro F. Villaverde and David Henriques; Arnau Montagud
  • Funders
  • Fundação para a Ciência e a Tecnologia
  • Fundação Calouste Gulbenkian
LATEST VERSION PUBLISHED 11 Mar 2019
https://doi.org/10.12688/f1000research.15997.1
Review metrics
Recent advances in biomedical simulations: a manifesto for model engineering
[version 1; peer review: 3 approved]
Joseph L. Hellerstein, Stanley Gu, Kiri Choi, Herbert M. Sauro
Peer Reviewers Robert Hoehndorf; Shuichi Onami; Martin Meier-Schellersheim
  • Funders
  • Gordon and Betty Moore Foundation
  • Alfred P. Sloan Foundation
  • NIH
  • NIAID
PUBLISHED 05 Mar 2019
https://doi.org/10.12688/f1000research.17149.2
Research Article metrics
Revised
Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
[version 2; peer review: 2 approved]
Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang-Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Peer Reviewers Elizabeth A. Coker; Therese Commes
  • Funders
  • Fonds National de la Recherche Luxembourg
  • Ministère de l'Education Nationale, de l'Enseignement Superieur et de la Recherche
LATEST VERSION PUBLISHED 05 Mar 2019
https://doi.org/10.12688/f1000research.16613.2
Research Article metrics
Revised
False signals induced by single-cell imputation
[version 2; peer review: 4 approved]
Tallulah S. Andrews, Martin Hemberg
Peer Reviewers Simone Tiberi; Jean Fan; Charlotte Soneson; Stephanie C Hicks
  • Funders
  • Chan Zuckerberg Initiative
  • Wellcome Trust
LATEST VERSION PUBLISHED 05 Mar 2019
https://doi.org/10.12688/f1000research.15949.2
Software Tool Article metrics
Revised
The Mega2R package: R tools for accessing and processing genetic data in common formats
[version 2; peer review: 3 approved]
Robert V. Baron, Justin R. Stickel, Daniel E. Weeks
Peer Reviewers Dajiang J. Lui; Alejandro Q. Nato, Jr.; Derek Gordon
  • Funders
  • The University of Pittsburgh
  • National Institutes of Health
LATEST VERSION PUBLISHED 25 Feb 2019
https://doi.org/10.12688/f1000research.17916.1
Method Article metrics
Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
[version 1; peer review: 1 approved, 2 approved with reservations]
Kimon Froussios, Kira Mourão, Gordon Simpson, Geoffrey J. Barton, Nicholas Schurch
Peer Reviewers Sophie Shaw; James P. B. Lloyd; Michael I. Love
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 24 Feb 2019
https://doi.org/10.12688/f1000research.14591.2
Research Article metrics
Clinical trial
Revised
A study update newsletter or Post-it® note did not increase postal questionnaire response rates in a falls prevention trial: an embedded randomised factorial trial
[version 2; peer review: 2 approved]
Sara Rodgers, Illary Sbizzera, Sarah Cockayne, Caroline Fairhurst, Sarah E. Lamb, Wesley Vernon, Judith Watson, Catherine Hewitt, David J. Torgerson
Peer Reviewers Shaun P. Treweek; Phil J. Edwards and Benjamin Woolf
  • Funders
  • National Institute for Health Research
  • York Trials Unit
LATEST VERSION PUBLISHED 19 Feb 2019
https://doi.org/10.12688/f1000research.17693.1
Research Note metrics
Massive open online courses on biomedical informatics
[version 1; peer review: 2 not approved]
Cender Udai Quispe-Juli, Victor Hugo Moquillaza-Alcántara, Katherine Arapa-Apaza
Peer Reviewers Edward Meinert; Tharindu Liyanagunawardena
  • Funder
  • Fondo Nacional de Desarrollo Científico y Tecnológico
PUBLISHED 14 Feb 2019
https://doi.org/10.12688/f1000research.16877.1
Review metrics
Chain reaction: LINC complexes and nuclear positioning
[version 1; peer review: 3 approved]
Brian Burke
Peer Reviewers Didier Hodzic; Wolfram Antonin; Daniel A Starr
  • Funder
  • National Medical Research Council, Singapore
PUBLISHED 31 Jan 2019
https://doi.org/10.12688/f1000research.16903.1
Review metrics
Recent advances in proximity-based labeling methods for interactome mapping
[version 1; peer review: 2 approved]
Laura Trinkle-Mulcahy
Peer Reviewers Arnaud Poterszman; Francois-Michel Boisvert
  • Funder
  • NSERC Discovery Grant-funded project
PUBLISHED 31 Jan 2019
https://doi.org/10.12688/f1000research.17228.1
Review metrics
Recent advances in understanding necrotizing enterocolitis
[version 1; peer review: 2 approved]
Mashriq Alganabi, Carol Lee, Edoardo Bindi, Bo Li, Agostino Pierro
Peer Reviewers Denis A. Cozzi; Jörn-Hendrik Weitkamp
  • Funders
  • Canadian Institutes of Health Research (CIHR) Foundation Grant
  • Robert M. Filler Chair of Surgery, The Hospital for Sick Children, University of Toronto
PUBLISHED 25 Jan 2019
https://doi.org/10.12688/f1000research.16450.2
Software Tool Article metrics
Revised
Improve your Galaxy text life: The Query Tabular Tool
[version 2; peer review: 3 approved]
James E. Johnson, Praveen Kumar, Caleb Easterly, Mark Esler, Subina Mehta, Arthur C. Eschenlauer, Adrian D. Hegeman, Pratik D. Jagtap, Timothy J. Griffin
Peer Reviewers Daniel Blankenberg; Maria A. Doyle; Margaret E Staton
  • Funders
  • National Institutes of Health
  • National Science Foundation
LATEST VERSION PUBLISHED 09 Jan 2019
https://doi.org/10.12688/f1000research.17518.1
Software Tool Article metrics
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor
[version 1; peer review: 2 approved]
Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron, Martin Morgan, Vincent Carey
Peer Reviewers Dennis J. Hazelett; Sheila Reynolds
  • Funders
  • National Institutes of Health
  • Chan Zuckerberg Initiative
PUBLISHED 07 Jan 2019
https://doi.org/10.12688/f1000research.16255.2
Research Article metrics
Revised
Functional proteomic profiling reveals KLK13 and TMPRSS11D as active proteases in the lower female reproductive tract
[version 2; peer review: 2 approved]
Carla M.J. Muytjens, Yijing Yu, Eleftherios P. Diamandis
Peer Reviewers Georgios Pampalakis; Céline Deraison
LATEST VERSION PUBLISHED 31 Dec 2018
https://doi.org/10.12688/f1000research.17315.1
Method Article metrics
Rapid identification of novel protein families using similarity searches
[version 1; peer review: 2 approved]
Matt Jeffryes, Alex Bateman
Peer Reviewers Daniel J. Rigden; Desmond G Higgins
  • Funder
  • European Molecular Biology Laboratory
PUBLISHED 24 Dec 2018
https://doi.org/10.12688/f1000research.16245.1
Review metrics
Recent advances in managing lower urinary tract infections
[version 1; peer review: 2 approved]
Seung-Ju Lee
Peer Reviewers Linda Cardozo; Florian Wagenlehner
PUBLISHED 21 Dec 2018
321-340 of 638 ARTICLES
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