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https://doi.org/10.12688/f1000research.19481.1
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Metabolic phenotyping of the human microbiome
[version 1; peer review: 2 approved]
Wiley Barton, Orla O'Sullivan, Paul D. Cotter
Peer Reviewers Robert E Brown; Jack A Gilbert
  • Funders
  • Department of Agriculture, Food and the Marine
  • Science Foundation Ireland
PUBLISHED 22 Nov 2019
https://doi.org/10.12688/f1000research.20179.1
Review metrics
Recent advances in developing disease resistance in plants
[version 1; peer review: 2 approved]
Anuj Sharma, Jeffrey B. Jones, Frank F. White
Peer Reviewers Zuhua He; Magdy M Mahfouz
  • Funders
  • Gates Foundation
  • National Science Foundation
PUBLISHED 19 Nov 2019
https://doi.org/10.12688/f1000research.17714.1
Review metrics
Presurgical epilepsy evaluation and epilepsy surgery
[version 1; peer review: 2 approved]
Christoph Baumgartner, Johannes P. Koren, Martha Britto-Arias, Lea Zoche, Susanne Pirker
Peer Reviewers Daniel L Drane; Pieter van Mierlo
PUBLISHED 29 Oct 2019
https://doi.org/10.12688/f1000research.18223.2
Research Article metrics
Revised
Knowledge management awareness assessment in Nigerian tertiary institutions
[version 2; peer review: 2 approved]
Afolakemi Simbo Ogunbanwo, Julius Olatunji Okesola, Sheryl Buckley
Peer Reviewers Aderonke Oni; Magiswary Dorasamy
  • Funder
  • University of South Africa
LATEST VERSION PUBLISHED 16 Oct 2019
https://doi.org/10.12688/f1000research.20843.1
Software Tool Article metrics
Creating and sharing reproducible research code the workflowr way
[version 1; peer review: 3 approved]
John D. Blischak, Peter Carbonetto, Matthew Stephens
Peer Reviewers Peter F. Hickey; Przemysław Biecek; Peter Baker
  • Funder
  • Gordon and Betty Moore Foundation
PUBLISHED 14 Oct 2019
https://doi.org/10.12688/f1000research.16216.2
Software Tool Article metrics
Revised
Feature selection with the R package MXM
[version 2; peer review: 2 approved]
Michail Tsagris, Ioannis Tsamardinos
Peer Reviewers Thodoris Kypraios; Huitong Qiu
  • Funder
  • Seventh Framework Programme
LATEST VERSION PUBLISHED 30 Sep 2019
https://doi.org/10.12688/f1000research.19541.3
Software Tool Article metrics
Revised
InferAMP, a python web app for copy number inference from discrete gene-level amplification signals noted in clinical tumor profiling reports
[version 3; peer review: 2 approved]
Paraic A. Kenny
Peer Reviewers Andrew C. Nelson; Oscar Krijgsman
  • Funder
  • Gundersen Medical Foundation
LATEST VERSION PUBLISHED 26 Sep 2019
https://doi.org/10.12688/f1000research.18238.1
Opinion Article metrics
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
[version 1; peer review: 2 approved with reservations]
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul J. P. Bonnal, Hidemasa Bono, Jesualdo T. Fernández-Breis, Robert Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin B. Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla Garcia, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Perez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
Peer Reviewers Todd J. Vision; João Moreira
  • Funder
  • National Bioscience Database Center, the Japan Science and Technology Agency (JST)
PUBLISHED 23 Sep 2019
https://doi.org/10.12688/f1000research.19029.2
Software Tool Article metrics
Revised
Network-based Observability and Controllability Analysis of Dynamical Systems: the NOCAD toolbox
[version 2; peer review: 2 approved]
Dániel Leitold, Ágnes Vathy-Fogarassy, János Abonyi
Peer Reviewers Gilles Didier; Arthur Montanari, Ercílio Moreira and Luis A. Aguirre
  • Funders
  • Emberi Eroforrások Minisztériuma
  • Országos Tudományos Kutatási Alapprogramok
LATEST VERSION PUBLISHED 18 Sep 2019
https://doi.org/10.12688/f1000research.19721.1
Review metrics
Cardiac magnetic resonance imaging: the future is bright
[version 1; peer review: 2 approved]
Karthik Seetharam, Stamatios Lerakis
Peer Reviewers Jeroen J. Bax; Lauren A Baldassarre
PUBLISHED 13 Sep 2019
https://doi.org/10.12688/f1000research.16032.3
Software Tool Article metrics
Revised
epiflows: an R package for risk assessment of travel-related spread of disease
[version 3; peer review: 2 approved]
Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Pawel Piatkowski, Salla E. Toikkanen, VP Nagraj, Christl A. Donnelly, Thibaut Jombart
Peer Reviewers Noam Ross; Jon Zelner
  • Funders
  • National Institute for Health Research
  • UK Medical Research Council
  • Imperial College Junior Research Fellowship
LATEST VERSION PUBLISHED 12 Sep 2019
https://doi.org/10.12688/f1000research.19427.1
Research Article metrics
Understanding life sciences data curation practices via user research
[version 1; peer review: 1 approved, 1 approved with reservations]
Aravind Venkatesan, Nikiforos Karamanis, Michele Ide-Smith, Jonathan Hickford, Johanna McEntyre
Peer Reviewers Lynette Hirschman; Cecilia N. Arighi
  • Funder
  • European Commission
PUBLISHED 11 Sep 2019
https://doi.org/10.12688/f1000research.20421.1
Research Article metrics
Optimal price-based control of heterogeneous thermostatically controlled loads under uncertainty using LSTM networks and genetic algorithms
[version 1; peer review: 2 approved with reservations, 1 not approved]
Taha Abdelhalim Nakabi, Pekka Toivanen
Peer Reviewers Matsukawa Shun; Chiou-Jye Huang; Shanti Swarup
  • Funder
  • Jenny ja Antti Wihurin Rahasto
PUBLISHED 10 Sep 2019
https://doi.org/10.12688/f1000research.16200.2
Research Article metrics
Revised
Predicting transcription factor binding using ensemble random forest models
[version 2; peer review: 2 approved]
Fatemeh Behjati Ardakani, Florian Schmidt, Marcel H. Schulz
Peer Reviewers Jan Grau; Gary D Stormo
  • Funder
  • Cluster of Excellence on Multimodal Computing and Interaction (DFG)
LATEST VERSION PUBLISHED 02 Sep 2019
https://doi.org/10.12688/f1000research.18926.1
Review metrics
Evolving principles underlying neural lineage conversion and their relevance for biomedical translation
[version 1; peer review: 4 approved]
Lea Jessica Flitsch, Oliver Brüstle
Peer Reviewers Andrew Yoo; Kristin Baldwin; Jerome Mertens; Agnete Kirkeby
  • Funders
  • ERA-Net Neuron program
  • Bundesministerium für Bildung und Forschung
  • European Union
  • National Institutes of Health
PUBLISHED 30 Aug 2019
https://doi.org/10.12688/f1000research.14613.2
Software Tool Article metrics
Revised
CyTargetLinker app update: A flexible solution for network extension in Cytoscape
[version 2; peer review: 2 approved]
Martina Kutmon, Friederike Ehrhart, Egon L. Willighagen, Chris T. Evelo, Susan L. Coort
Peer Reviewers Alex Gutteridge; John H. Morris
  • Funders
  • ELIXIR
  • Dutch Province of Limburg
LATEST VERSION PUBLISHED 13 Aug 2019
https://doi.org/10.12688/f1000research.16083.2
Software Tool Article metrics
Revised
seqCAT: a Bioconductor R-package for variant analysis of high throughput sequencing data
[version 2; peer review: 1 approved, 1 not approved]
Erik Fasterius, Cristina Al-Khalili Szigyarto
Peer Reviewers Matej Lexa; Jean Fan
  • Funder
  • European Community 7th Framework Program
LATEST VERSION PUBLISHED 12 Aug 2019
https://doi.org/10.12688/f1000research.17181.2
Research Article metrics
Revised
Perceptions and use of technology in older people with ophthalmic conditions
[version 2; peer review: 2 approved]
Zaria C. Ali, Savana Shakir, Tariq Mehmood Aslam
Peer Reviewers Jill Waalen; Michel Michaelides
  • Funder
  • Thea Pharmaceuticals
LATEST VERSION PUBLISHED 05 Aug 2019
https://doi.org/10.12688/f1000research.20027.1
Software Tool Article metrics
ChIPdig: a comprehensive user-friendly tool for mining multi-sample ChIP-seq data
[version 1; peer review: 3 approved with reservations]
Ruben Esse
Peer Reviewers Tao Liu; Hinrich Gronemeyer and Marco Antonio Mendoza-Parra; Thomas Carroll
  • Funder
  • National Institutes of Health
PUBLISHED 31 Jul 2019
https://doi.org/10.12688/f1000research.19355.1
Review metrics
Recent advances in understanding and managing phantom limb pain
[version 1; peer review: 2 approved]
Andrea Aternali, Joel Katz
Peer Reviewers Tamar R Makin; Jack W Tsao
  • Funder
  • Canadian Research Chair in Health Psychology
PUBLISHED 23 Jul 2019
441-460 of 1,016 ARTICLES
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