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https://doi.org/10.12688/f1000research.9501.2
Software Tool Article metrics
Revised
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
[version 2; peer review: 3 approved, 2 approved with reservations]
Aaron T.L. Lun, Davis J. McCarthy, John C. Marioni
Peer Reviewers Diana H.P. Low; Hongkai Ji; Andrew McDavid; David duVerle; Antonio Rausell
LATEST VERSION PUBLISHED 31 Oct 2016
https://doi.org/10.12688/f1000research.9484.2
Research Note metrics
Revised
Analysis of morphine responses in mice reveals a QTL on Chromosome 7
[version 2; peer review: 2 approved]
Wim E. Crusio, Esha Dhawan, Elissa J. Chesler, Anna Delprato
Peer Reviewers Clarissa Parker; Robert Gerlai
LATEST VERSION PUBLISHED 27 Oct 2016
https://doi.org/10.12688/f1000research.9615.1
Review metrics
Bacteriocin production: a relatively unharnessed probiotic trait?
[version 1; peer review: 2 approved]
James W. Hegarty, Caitriona M. Guinane, R. Paul Ross, Colin Hill, Paul D. Cotter
Peer Reviewers Michael Chikindas; Antonio Galvez
PUBLISHED 27 Oct 2016
https://doi.org/10.12688/f1000research.8950.3
Data Note metrics
Revised
High quality, small molecule-activity datasets for kinase research
[version 3; peer review: 2 approved]
Rajan Sharma, Stephan C. Schürer, Steven M. Muskal
Peer Reviewers George Nicola; Sorin Avram
LATEST VERSION PUBLISHED 26 Oct 2016
https://doi.org/10.12688/f1000research.7403.1
Review metrics
Current strategies to treat tuberculosis
[version 1; peer review: 2 approved]
Anthony T. Podany, Susan Swindells
Peer Reviewers Andreas Diacon; Digby Warner
PUBLISHED 26 Oct 2016
https://doi.org/10.12688/f1000research.9241.1
Review metrics
Recent advances in Entamoeba biology: RNA interference, drug discovery, and gut microbiome
[version 1; peer review: 4 approved]
Pedro Morgado, Dipak Manna, Upinder Singh
Peer Reviewers Lesly Temesvari; Sudha Bhattacharya; Sharon Reed; Tomoyoshi Nozaki
PUBLISHED 26 Oct 2016
https://doi.org/10.12688/f1000research.9357.2
Software Tool Article metrics
Revised
Genomic variant annotation workflow for clinical applications
[version 2; peer review: 2 approved]
Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, Niko Beerenwinkel
Peer Reviewers Christopher Southan; Ankush Sharma and Md. Sahidul Islam
LATEST VERSION PUBLISHED 24 Oct 2016
https://doi.org/10.12688/f1000research.5140.2
Method Article metrics
Revised
Elucidating genomic gaps using phenotypic profiles
[version 2; peer review: 1 approved, 1 approved with reservations]
Daniel A. Cuevas, Daniel Garza, Savannah E. Sanchez, Jason Rostron, Chris S. Henry, Veronika Vonstein, Ross A. Overbeek, Anca Segall, Forest Rohwer, Elizabeth A. Dinsdale, Robert A. Edwards
Peer Reviewers Matthew A. Oberhardt; Aaron Best
LATEST VERSION PUBLISHED 17 Oct 2016
https://doi.org/10.12688/f1000research.9477.1
Review metrics
Muddled mechanisms: recent progress towards antimalarial target identification
[version 1; peer review: 2 approved]
Rachel L. Edwards, Audrey R. Odom John
Peer Reviewers Frederick Buckner; Maria Belen Cassera
PUBLISHED 13 Oct 2016
https://doi.org/10.12688/f1000research.9662.1
Research Article metrics
Metagenomic analysis of medicinal Cannabis samples; pathogenic bacteria, toxigenic fungi, and beneficial microbes grow in culture-based yeast and mold tests
[version 1; peer review: 3 approved, 1 approved with reservations]
Kevin McKernan, Jessica Spangler, Yvonne Helbert, Ryan C. Lynch, Adrian Devitt-Lee, Lei Zhang, Wendell Orphe, Jason Warner, Theodore Foss, Christopher J. Hudalla, Matthew Silva, Douglas R. Smith
Peer Reviewers Ethan B. Russo; Justin Fischedick; Philippe Henry and Lukas Wille; Jahan P Marcu
PUBLISHED 07 Oct 2016
https://doi.org/10.12688/f1000research.9466.1
Review metrics
Recent advances in understanding hepatic drug transport
[version 1; peer review: 2 approved]
Bruno Stieger, Bruno Hagenbuch
Peer Reviewers Amal Khalil Kaddoumi; Richard Kim
PUBLISHED 06 Oct 2016
https://doi.org/10.12688/f1000research.9663.1
Editorial metrics NOT PEER REVIEWED
The 2016 Bioinformatics Open Source Conference (BOSC)
[version 1; peer review: not peer reviewed]
Nomi L. Harris, Peter J.A. Cock, Brad Chapman, Christopher J. Fields, Karsten Hokamp, Hilmar Lapp, Monica Muñoz-Torres, Heather Wiencko
PUBLISHED 06 Oct 2016
https://doi.org/10.12688/f1000research.9515.1
Review metrics
Current status and future prospects for enabling chemistry technology in the drug discovery process
[version 1; peer review: 2 approved]
Stevan W. Djuric, Charles W. Hutchins, Nari N. Talaty
Peer Reviewers Jeffrey Aube; Christopher Hulme
PUBLISHED 30 Sep 2016
https://doi.org/10.12688/f1000research.7018.1
Review metrics
Advances in understanding COPD
[version 1; peer review: 3 approved]
Gary P. Anderson
Peer Reviewers Leonardo M Fabbri; Prof RA Stockley; Marc M. Miravitlles
PUBLISHED 27 Sep 2016
https://doi.org/10.12688/f1000research.9118.2
Software Tool Article metrics
Revised
Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks
[version 2; peer review: 2 approved]
Tanja Muetze, Ivan H. Goenawan, Heather L. Wiencko, Manuel Bernal-Llinares, Kenneth Bryan, David J. Lynn
Peer Reviewers Sandra Orchard and Pablo Porras Millán; Christopher K. Tuggle and Haibo Liu
LATEST VERSION PUBLISHED 30 Aug 2016
https://doi.org/10.12688/f1000research.9207.1
Review metrics
mTOR inhibitors in cancer therapy
[version 1; peer review: 3 approved]
Jianling Xie, Xuemin Wang, Christopher G. Proud
Peer Reviewers Mario Pende; Andrew Tee; Joseph Avruch
PUBLISHED 25 Aug 2016
https://doi.org/10.12688/f1000research.9315.1
Method Article metrics
Unit testing, model validation, and biological simulation
[version 1; peer review: 2 approved, 1 approved with reservations]
Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, Richard C. Gerkin
Peer Reviewers Robert Cannon; Christian Roessert; Andrew Davison
PUBLISHED 10 Aug 2016
https://doi.org/10.12688/f1000research.8792.2
Research Article metrics
Revised
Analyzing compound activity records and promiscuity degrees in light of publication statistics
[version 2; peer review: 2 approved]
Ye Hu, Jürgen Bajorath
Peer Reviewers Kimito Funatsu; Hans Matter
LATEST VERSION PUBLISHED 10 Aug 2016
https://doi.org/10.12688/f1000research.3-53.v3
Software Tool Article metrics
Revised
wigExplorer, a BioJS component to visualise wig data
[version 3; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Anil S. Thanki, Rafael C. Jimenez, Gemy G. Kaithakottil, Manuel Corpas, Robert P. Davey
Peer Reviewers Robert Buels; Phil Lord; Stefan Thomas Lang; Chunlei Wu and Jiwen Xin
LATEST VERSION PUBLISHED 09 Aug 2016
https://doi.org/10.12688/f1000research.9093.1
Research Article metrics
Cluster analysis of Plasmodium RNA-seq time-course data identifies stage-specific co-regulated biological processes and regulatory elements
[version 1; peer review: 1 approved, 2 approved with reservations]
Efejiro Ashano, Itunuoluwa Isewon, Jelili Oyelade, Ezekiel Adebiyi
Peer Reviewers Manuel Corpas; Hilary Ann Coller; Thomas D. Otto and Gavin Rutledge
PUBLISHED 08 Aug 2016
481-500 of 638 ARTICLES
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