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https://doi.org/10.12688/f1000research.7302.1
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Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence
[version 1; peer review: 2 approved]
Neeraja M. Krishnan, Saurabh Gupta, Vinayak Palve, Linu Varghese, Swetansu Pattnaik, Prach Jain, Costerwell Khyriem, Arun Hariharan, Kunal Dhas, Jayalakshmi Nair, Manisha Pareek, Venkatesh Prasad, Gangotri Siddappa, Amritha Suresh, Vikram Kekatpure, Moni Kuriakose, Binay Panda
Peer Reviewers Nishant Agrawal; Thomas Carey
PUBLISHED 05 Nov 2015
https://doi.org/10.12688/f1000research.5595.2
Research Article metrics
Revised
Subdivisions of the adult zebrafish pallium based on molecular marker analysis
[version 2; peer review: 2 approved, 1 approved with reservations]
Julia Ganz, Volker Kroehne, Dorian Freudenreich, Anja Machate, Michaela Geffarth, Ingo Braasch, Jan Kaslin, Michael Brand
Peer Reviewers Monica Folgueira; Perrti Panula; Stephen W. Wilson
LATEST VERSION PUBLISHED 04 Nov 2015
https://doi.org/10.12688/f1000research.6077.2
Research Article metrics
Revised
Tetranucleotide usage highlights genomic heterogeneity among mycobacteriophages
[version 2; peer review: 2 approved]
Benjamin Siranosian, Sudheesha Perera, Edward Williams, Chen Ye, Christopher de Graffenried, Peter Shank
Peer Reviewers Oliver Bonham-Carter; David Martin
LATEST VERSION PUBLISHED 30 Oct 2015
https://doi.org/10.12688/f1000research.6645.1
Review metrics
Cancer Genomics
[version 1; peer review: 2 approved]
Elaine Mardis
Peer Reviewers Timothy J. Triche; Caroline Dive
PUBLISHED 28 Oct 2015
https://doi.org/10.12688/f1000research.7143.1
Research Article metrics
Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene
[version 1; peer review: 3 approved]
Jaroslav Michalko, Marta Dravecká, Tobias Bollenbach, Jiří Friml
Peer Reviewers Lars Ostergaard; Richard M. Napier; Christian Luschnig
PUBLISHED 23 Oct 2015
https://doi.org/10.12688/f1000research.6030.2
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Revised
AGA: Interactive pipeline for reproducible gene expression and DNA methylation data analyses
[version 2; peer review: 2 approved]
Michael Considine, Hilary Parker, Yingying Wei, Xaio Xia, Leslie Cope, Michael Ochs, Elana Fertig
Peer Reviewers Subha Madhavan; Matthew McCall
LATEST VERSION PUBLISHED 21 Oct 2015
https://doi.org/10.12688/f1000research.7201.1
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MinION Analysis and Reference Consortium: Phase 1 data release and analysis
[version 1; peer review: 2 approved]
Camilla L.C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David A. Eccles, Vadim Zalunin, John M. Urban, Paolo Piazza, Rory J. Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O'Grady, Hugh E. Olsen, MinION Analysis and Reference Consortium
Peer Reviewers Michael Quail and Louise Aigrain; Nicholas J. Loman
PUBLISHED 15 Oct 2015
https://doi.org/10.12688/f1000research.7229.1
Editorial metrics NOT PEER REVIEWED
A disruptive sequencer meets disruptive publishing
[version 1; peer review: not peer reviewed]
Nick Loman, Sarah Goodwin, Hans J. Jansen, Matt Loose
PUBLISHED 15 Oct 2015
https://doi.org/10.12688/f1000research.2-172.v2
Research Article metrics
Revised
Characterization of known protein complexes using k-connectivity and other topological measures
[version 2; peer review: 1 approved, 2 approved with reservations]
Suzanne R Gallagher, Debra S Goldberg
Peer Reviewers Lin Gao; Nassim Sohaee; Joel Bader
LATEST VERSION PUBLISHED 09 Oct 2015
https://doi.org/10.12688/f1000research.7137.1
Case Report metrics
Case Report: Pulmonary Kaposi Sarcoma in a non-HIV patient
[version 1; peer review: 2 approved]
Arber Kodra, Maciej Walczyszyn, Craig Grossman, Daniel Zapata, Tarak Rambhatla, Bushra Mina
Peer Reviewers Michael O'Connor; Chunxue Bai
PUBLISHED 07 Oct 2015
https://doi.org/10.12688/f1000research.4884.4
Method Article metrics
Revised
MicroRNA levels quantified in whole blood varies from PBMCs
[version 4; peer review: 2 approved, 1 not approved]
Sadaf Atarod, Hannah Smith, Anne Dickinson, Xiao-Nong Wang
Peer Reviewers Kenneth Whitaker Witwer; Steven O'Reilly; Stefano Casola
LATEST VERSION PUBLISHED 06 Oct 2015
https://doi.org/10.12688/f1000research.6944.2
Research Note metrics
Revised
The ubiquitous and ancient ER membrane protein complex (EMC): tether or not?
[version 2; peer review: 2 approved, 1 approved with reservations]
Jeremy G. Wideman
Peer Reviewers Sujoy Lahiri; Courtney Stairs; Christopher Loewen
LATEST VERSION PUBLISHED 05 Oct 2015
https://doi.org/10.12688/f1000research.4591.3
Method Article metrics
Revised
Detecting miRNA Mentions and Relations in Biomedical Literature
[version 3; peer review: 2 approved, 1 approved with reservations]
Shweta Bagewadi, Tamara Bobić, Martin Hofmann-Apitius, Juliane Fluck, Roman Klinger
Peer Reviewers Sofie Van Landeghem; Filip Ginter; Robert Leaman
LATEST VERSION PUBLISHED 01 Oct 2015
https://doi.org/10.12688/f1000research.7095.1
Opinion Article metrics
Circulating nucleic acids: a new class of physiological mobile genetic elements
[version 1; peer review: 2 approved]
Indraneel Mittra
Peer Reviewers Silvia Gravina; Manchanahalli Rangaswamy Satyanarayana Rao
PUBLISHED 30 Sep 2015
https://doi.org/10.12688/f1000research.6835.2
Review metrics
Revised
Intracellular Dynamics of the Ubiquitin-Proteasome-System
[version 2; peer review: 3 approved]
Maisha Chowdhury, Cordula Enenkel
Peer Reviewers Petra Wendler; Philip Coffino; Paula C. Ramos
LATEST VERSION PUBLISHED 28 Sep 2015
https://doi.org/10.12688/f1000research.7127.1
Antibody Validation Article metrics
Reactivity of vertebrate-directed phospho-eEF2 antibody against the Caenorhabditis elegans orthologue phospho-EEF-2
[version 1; peer review: 2 approved]
Viviane Alves
Peer Reviewers Richard Silva; Kevin N. Dalby
PUBLISHED 25 Sep 2015
https://doi.org/10.12688/f1000research.6924.1
Software Tool Article metrics
The khmer software package: enabling efficient nucleotide sequence analysis
[version 1; peer review: 2 approved, 1 approved with reservations]
Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Erich Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown
Peer Reviewers Ewan Birney; Daniel S. Katz; Rob Patro
PUBLISHED 25 Sep 2015
https://doi.org/10.12688/f1000research.6529.2
Method Article metrics
Revised
Amicon-adapted enhanced FASP: an in-solution digestion-based alternative sample preparation method to FASP
[version 2; peer review: 2 approved with reservations]
David Pellerin, Hugo Gagnon, Jean Dubé, Francois Corbin
Peer Reviewers Lloyd D. Fricker; Éric Bonneil
LATEST VERSION PUBLISHED 24 Sep 2015
https://doi.org/10.12688/f1000research.6801.2
Research Article metrics
Revised
Cerebrospinal Fluid Biomarkers of Japanese Encephalitis
[version 2; peer review: 3 approved]
Nabonita Sengupta, Sriparna Mukherjee, Piyush Tripathi, Rashmi Kumar, Amol Ratnakar Suryawanshi, Anirban Basu
Peer Reviewers Akhil C. Banerjea; Anil Kumar; Daniel Růžek
LATEST VERSION PUBLISHED 03 Sep 2015
https://doi.org/10.12688/f1000research.6831.1
Research Article metrics
Molecular Dynamics Simulations of the Temperature Induced Unfolding of Crambin Follow the Arrhenius Equation.
[version 1; peer review: 1 approved, 2 approved with reservations]
Andrew R. Dalby, Mohd Shahir Shamsir
Peer Reviewers Melchor Sanchez-Martinez; Dmitry Nerukh; Adrian J. Mulholland
PUBLISHED 20 Aug 2015
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