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https://doi.org/10.12688/f1000research.7153.1
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Varicella Zoster Virus in the Nervous System
[version 1; peer review: 3 approved]
Don Gilden, Maria Nagel, Randall Cohrs, Ravi Mahalingam, Nicholas Baird
Peer Reviewers Kamel Khalili; Ann Arvin; Howard Lipton
PUBLISHED 26 Nov 2015
https://doi.org/10.12688/f1000research.7336.1
Research Note metrics PEER REVIEW DISCONTINUED
Transcription factor regulation as a mechanism of confounding effects between distinct human traits
[version 1; peer review: 1 not approved]
Milos Pjanic, Clint L. Miller, Thomas Quertermous
Peer Reviewers Gregory Gibson and Urko M. Marigorta
PUBLISHED 25 Nov 2015
https://doi.org/10.12688/f1000research.7265.2
Opinion Article metrics
Revised
Quality of histone modification antibodies undermines chromatin biology research
[version 2; peer review: 3 approved]
Goran Kungulovski, Albert Jeltsch
Peer Reviewers Andrew Bradbury; Scott B. Rothbart; Shohei Koide
LATEST VERSION PUBLISHED 24 Nov 2015
https://doi.org/10.12688/f1000research.7413.1
Method Article metrics
A DNA extraction protocol for improved DNA yield from individual mosquitoes
[version 1; peer review: 3 approved]
Catelyn C. Nieman, Youki Yamasaki, Travis C. Collier, Yoosook Lee
Peer Reviewers Beniamino Caputo and Verena Pichler; Zainulabeuddin Syed and Paul Hickner; Karla Saavedra-Rodriguez
PUBLISHED 20 Nov 2015
https://doi.org/10.12688/f1000research.7334.1
Software Tool Article metrics
HiCUP: pipeline for mapping and processing Hi-C data
[version 1; peer review: 2 approved, 1 approved with reservations]
Steven W. Wingett, Philip Ewels, Mayra Furlan-Magaril, Takashi Nagano, Stefan Schoenfelder, Peter Fraser, Simon Andrews
Peer Reviewers Ferhat Ay; Juan M. Vaquerizas and Kruse Kai; Nicola Neretti
PUBLISHED 20 Nov 2015
https://doi.org/10.12688/f1000research.5754.2
Software Tool Article metrics
Revised
G-Links: a gene-centric link acquisition service
[version 2; peer review: 2 approved]
Kazuki Oshita, Masaru Tomita, Kazuharu Arakawa
Peer Reviewers Mark A. Ragan and Sriganesh Srihari; Kenji Satou
LATEST VERSION PUBLISHED 18 Nov 2015
https://doi.org/10.12688/f1000research.7178.1
Research Article metrics
Protein disorder reduced in Saccharomyces cerevisiae to survive heat shock
[version 1; peer review: 2 approved, 1 approved with reservations]
Esmeralda Vicedo, Zofia Gasik, Yu-An Dong, Tatyana Goldberg, Burkhard Rost
Peer Reviewers Melchor Sanchez-Martinez; Paul Pavlidis; Anuj Kumar
PUBLISHED 06 Nov 2015
https://doi.org/10.12688/f1000research.6617.2
Research Article metrics
Revised
YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut
[version 2; peer review: 3 approved]
Sandeep Chakraborty, Monica Britton, Jill Wegrzyn, Timothy Butterfield, Pedro José Martínez-García, Russell L. Reagan, Basuthkar J. Rao, Charles A. Leslie, Mallikarjuna Aradhaya, David Neale, Keith Woeste, Abhaya M. Dandekar
Peer Reviewers Varodom Charoensawan; Michael I. Love; Binay Panda
LATEST VERSION PUBLISHED 06 Nov 2015
https://doi.org/10.12688/f1000research.7302.1
Research Article metrics
Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence
[version 1; peer review: 2 approved]
Neeraja M. Krishnan, Saurabh Gupta, Vinayak Palve, Linu Varghese, Swetansu Pattnaik, Prach Jain, Costerwell Khyriem, Arun Hariharan, Kunal Dhas, Jayalakshmi Nair, Manisha Pareek, Venkatesh Prasad, Gangotri Siddappa, Amritha Suresh, Vikram Kekatpure, Moni Kuriakose, Binay Panda
Peer Reviewers Nishant Agrawal; Thomas Carey
PUBLISHED 05 Nov 2015
https://doi.org/10.12688/f1000research.5595.2
Research Article metrics
Revised
Subdivisions of the adult zebrafish pallium based on molecular marker analysis
[version 2; peer review: 2 approved, 1 approved with reservations]
Julia Ganz, Volker Kroehne, Dorian Freudenreich, Anja Machate, Michaela Geffarth, Ingo Braasch, Jan Kaslin, Michael Brand
Peer Reviewers Monica Folgueira; Perrti Panula; Stephen W. Wilson
LATEST VERSION PUBLISHED 04 Nov 2015
https://doi.org/10.12688/f1000research.6077.2
Research Article metrics
Revised
Tetranucleotide usage highlights genomic heterogeneity among mycobacteriophages
[version 2; peer review: 2 approved]
Benjamin Siranosian, Sudheesha Perera, Edward Williams, Chen Ye, Christopher de Graffenried, Peter Shank
Peer Reviewers Oliver Bonham-Carter; David Martin
LATEST VERSION PUBLISHED 30 Oct 2015
https://doi.org/10.12688/f1000research.6645.1
Review metrics
Cancer Genomics
[version 1; peer review: 2 approved]
Elaine Mardis
Peer Reviewers Timothy J. Triche; Caroline Dive
PUBLISHED 28 Oct 2015
https://doi.org/10.12688/f1000research.7143.1
Research Article metrics
Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene
[version 1; peer review: 3 approved]
Jaroslav Michalko, Marta Dravecká, Tobias Bollenbach, Jiří Friml
Peer Reviewers Lars Ostergaard; Richard M. Napier; Christian Luschnig
PUBLISHED 23 Oct 2015
https://doi.org/10.12688/f1000research.6030.2
Software Tool Article metrics
Revised
AGA: Interactive pipeline for reproducible gene expression and DNA methylation data analyses
[version 2; peer review: 2 approved]
Michael Considine, Hilary Parker, Yingying Wei, Xaio Xia, Leslie Cope, Michael Ochs, Elana Fertig
Peer Reviewers Subha Madhavan; Matthew McCall
LATEST VERSION PUBLISHED 21 Oct 2015
https://doi.org/10.12688/f1000research.7201.1
Research Article metrics
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
[version 1; peer review: 2 approved]
Camilla L.C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David A. Eccles, Vadim Zalunin, John M. Urban, Paolo Piazza, Rory J. Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O'Grady, Hugh E. Olsen, MinION Analysis and Reference Consortium
Peer Reviewers Michael Quail and Louise Aigrain; Nicholas J. Loman
PUBLISHED 15 Oct 2015
https://doi.org/10.12688/f1000research.7229.1
Editorial metrics NOT PEER REVIEWED
A disruptive sequencer meets disruptive publishing
[version 1; peer review: not peer reviewed]
Nick Loman, Sarah Goodwin, Hans J. Jansen, Matt Loose
PUBLISHED 15 Oct 2015
https://doi.org/10.12688/f1000research.2-172.v2
Research Article metrics
Revised
Characterization of known protein complexes using k-connectivity and other topological measures
[version 2; peer review: 1 approved, 2 approved with reservations]
Suzanne R Gallagher, Debra S Goldberg
Peer Reviewers Lin Gao; Nassim Sohaee; Joel Bader
LATEST VERSION PUBLISHED 09 Oct 2015
https://doi.org/10.12688/f1000research.7137.1
Case Report metrics
Case Report: Pulmonary Kaposi Sarcoma in a non-HIV patient
[version 1; peer review: 2 approved]
Arber Kodra, Maciej Walczyszyn, Craig Grossman, Daniel Zapata, Tarak Rambhatla, Bushra Mina
Peer Reviewers Michael O'Connor; Chunxue Bai
PUBLISHED 07 Oct 2015
https://doi.org/10.12688/f1000research.4884.4
Method Article metrics
Revised
MicroRNA levels quantified in whole blood varies from PBMCs
[version 4; peer review: 2 approved, 1 not approved]
Sadaf Atarod, Hannah Smith, Anne Dickinson, Xiao-Nong Wang
Peer Reviewers Kenneth Whitaker Witwer; Steven O'Reilly; Stefano Casola
LATEST VERSION PUBLISHED 06 Oct 2015
https://doi.org/10.12688/f1000research.6944.2
Research Note metrics
Revised
The ubiquitous and ancient ER membrane protein complex (EMC): tether or not?
[version 2; peer review: 2 approved, 1 approved with reservations]
Jeremy G. Wideman
Peer Reviewers Sujoy Lahiri; Courtney Stairs; Christopher Loewen
LATEST VERSION PUBLISHED 05 Oct 2015
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