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https://doi.org/10.12688/f1000research.17824.2
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Revised
Enhancing gene set enrichment using networks
[version 2; peer review: 2 approved, 2 approved with reservations]
Michael Prummer
Peer Reviewers Kimberly Glass; Monther Alhamdoosh; Jill P. Mesirov and Alexander Wenzel; Rita Casadio
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.18940.1
Review metrics
Unraveling neutrophil–Yersinia interactions during tissue infection
[version 1; peer review: 3 approved]
Joan Mecsas
Peer Reviewers James B. Bliska; Javier Pizarro-Cerdá; Petra Dersch
  • Funder
  • National Institutes of Health
PUBLISHED 11 Jul 2019
https://doi.org/10.12688/f1000research.18779.1
Review metrics
Force transduction by cadherin adhesions in morphogenesis
[version 1; peer review: 3 approved]
Willem-Jan Pannekoek, Johan de Rooij, Martijn Gloerich
Peer Reviewers René-Marc Mège; Emmanuel Farge; Carien Niessen
  • Funders
  • Netherlands Organisation for Scientific Research
  • European Commission
PUBLISHED 10 Jul 2019
https://doi.org/10.12688/f1000research.18503.1
Review metrics
Recent advances in colonoscopy
[version 1; peer review: 2 approved]
Edward Seward
Peer Reviewers Konstantinos Triantafyllou; Cesare Hassan
PUBLISHED 09 Jul 2019
https://doi.org/10.12688/f1000research.19675.1
Software Tool Article metrics
Large-scale sequence comparisons with sourmash
[version 1; peer review: 2 approved]
N. Tessa Pierce, Luiz Irber, Taylor Reiter, Phillip Brooks, C. Titus Brown
Peer Reviewers Brad Solomon; Rayan Chikhi
  • Funders
  • Gordon and Betty Moore Foundation
  • National Science Foundation
PUBLISHED 04 Jul 2019
https://doi.org/10.12688/f1000research.19132.1
Review metrics
Uterine natural killer cells: Time for a re-appraisal?
[version 1; peer review: 2 approved]
Judith N. Bulmer, Gendie E. Lash
Peer Reviewers Surendra Sharma; Shigeru Saito
  • Funders
  • Wellbeing of Women
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 02 Jul 2019
https://doi.org/10.12688/f1000research.17196.1
Review metrics
mTOR as a central regulator of lifespan and aging
[version 1; peer review: 3 approved]
David Papadopoli, Karine Boulay, Lawrence Kazak, Michael Pollak, Frédérick A. Mallette, Ivan Topisirovic, Laura Hulea
Peer Reviewers Dudley Lamming; David M Sabatini; Kathrin Thedieck, Alexander Martin Heberle and Patricia Razquin Navas
  • Funders
  • Fonds de Recherche du Québec-Santé
  • Terry Fox Research Institute
  • CIHR/ISF/IDRC/Azrieli Foundation Joint Canada‐Israel Research Program
  • Cole Foundation
  • Canadian Institutes of Health Research
PUBLISHED 02 Jul 2019
https://doi.org/10.12688/f1000research.18480.1
Review metrics
A theoretical model of temperate phages as mediators of gut microbiome dysbiosis
[version 1; peer review: 2 approved]
Derek M. Lin, Henry C. Lin
Peer Reviewers Hariom Yadav; Deanna L Gibson
  • Funder
  • Winkler Bacterial Overgrowth Research Fund
PUBLISHED 01 Jul 2019
https://doi.org/10.12688/f1000research.16182.1
Review metrics
What’s new in HIV dermatology?
[version 1; peer review: 2 approved]
Sarah J Coates, Kieron S Leslie
Peer Reviewers Anisa Mosam; Margot Whitfeld
PUBLISHED 28 Jun 2019
https://doi.org/10.12688/f1000research.18701.1
Review metrics
Recent advances in celiac disease and refractory celiac disease
[version 1; peer review: 2 approved]
Georgia Malamut, Sascha Cording, Nadine Cerf-Bensussan
Peer Reviewers Alessio Fasano; Armin Alaedini
  • Funders
  • la Fondation Princesse Grace
  • Association pour la Recherche Contre le Cancer
  • Agence Nationale pour la Recherche (ANR)
  • French Association of patients intolerant to gluten (AFDIAG)
PUBLISHED 26 Jun 2019
https://doi.org/10.12688/f1000research.19471.1
Research Article metrics
Dermatoglyphical impressions are different between children and adolescents with normal weight, overweight and obesity: a cross-sectional study
[version 1; peer review: 2 approved, 1 approved with reservations, 1 not approved]
Adriano Alberti, Emil Kupek, Clarissa Martinelli Comim, Carina Rossoni, Myrna Alicia Ruiz Reyes, Josiane Aparecida De Jesus, Leoberto Ricardo Grigollo, Bruna Becker da Silva, Ubirajara Duarte dos Santos, Renan Souza, Gracielle Fin, Elisabeth Baretta, Rudy José Nodari Júnior
Peer Reviewers Tarimobo Otobo; Lavanya Prathap and Prathap Suganthirababu; Ali Azhar Dawasaz; Jannu Chiranjeevi
  • Funder
  • Own financing
PUBLISHED 25 Jun 2019
https://doi.org/10.12688/f1000research.18883.1
Review metrics
Translational models of adaptive and excessive fighting: an emerging role for neural circuits in pathological aggression
[version 1; peer review: 3 approved]
Herbert E. Covington III, Emily L. Newman, Michael Z. Leonard, Klaus A. Miczek
Peer Reviewers Dayu Lin; Takefumi Kikusui; Kent Berridge
  • Funders
  • National Institute on Alcohol Abuse and Alcoholism
  • National Institute on Drug Abuse
PUBLISHED 25 Jun 2019
https://doi.org/10.12688/f1000research.19547.1
Research Article metrics
Risks and seasonal pattern for mortality among hospitalized infants in a conflict-affected area of Pakistan, 2013-2016. A retrospective chart review.
[version 1; peer review: 2 approved, 1 approved with reservations]
Babette van Deursen, Annick Lenglet, Cono Ariti, Barkat Hussain, Jaap Karsten, Harriet Roggeveen, Debbie Price, Jena Fernhout, Ahmed Abdi, Antonio Isidro Carrion Martin
Peer Reviewers Babar Tasneem Shaikh; Eva Leidman; Sharif Ismail
PUBLISHED 24 Jun 2019
https://doi.org/10.12688/f1000research.18832.1
Review metrics
A renewed tool kit to explore Chlamydia pathogenesis: from molecular genetics to new infection models
[version 1; peer review: 3 approved]
Lee Dolat, Raphael H Valdivia
Peer Reviewers Peter Timms; Kenneth Fields; Ming Tan
  • Funder
  • National Institute of Allergy and Infectious Diseases
PUBLISHED 21 Jun 2019
https://doi.org/10.12688/f1000research.18831.1
Review metrics
IL-1 in osteoarthritis: time for a critical review of the literature
[version 1; peer review: 2 approved]
Tonia L. Vincent
Peer Reviewers Tariq M. Haqqi; Charles J. Malemud
  • Funder
  • Versus Arthritis
PUBLISHED 21 Jun 2019
https://doi.org/10.12688/f1000research.17535.1
Review metrics
Medicines in pregnancy
[version 1; peer review: 3 approved]
Sarah JE Stock, Jane E Norman
Peer Reviewers Euan M. Wallace; David Olson; Jeffrey A Kuller
  • Funders
  • Tommy's
  • Medical Research Council
  • Wellcome Trust
PUBLISHED 20 Jun 2019
https://doi.org/10.12688/f1000research.19592.1
Software Tool Article metrics
Visualization of drug target interactions in the contexts of pathways and networks with ReactomeFIViz
[version 1; peer review: 3 approved]
Aurora S. Blucher, Shannon K. McWeeney, Lincoln Stein, Guanming Wu
Peer Reviewers Fuhai Li; Aritro Nath; Tero Aittokallio and Ziaurrehman Tanoli
  • Funder
  • National Institutes of Health
PUBLISHED 20 Jun 2019
https://doi.org/10.12688/f1000research.18456.1
Software Tool Article metrics
A step-by-step guide to analyzing CAGE data using R/Bioconductor
[version 1; peer review: 3 approved]
Malte Thodberg, Albin Sandelin
Peer Reviewers Aaron T. L. Lun; Kenta Nakai and Luis Augusto Eijy Nagai; Nevena Cvetesic
  • Funders
  • Danmarks Frie Forskningsfond
  • Kræftens Bekæmpelse
  • Danish Innovation Fund
  • Lundbeckfonden
  • Novo Nordisk Fonden
PUBLISHED 18 Jun 2019
https://doi.org/10.12688/f1000research.15344.3
Research Article metrics
Revised
Distribution of Toxoplasma gondii IgM and IgG antibody seropositivity among age groups and gestational periods in pregnant women
[version 3; peer review: 2 approved]
Shahida Sadiqui, Syed Rafiq Hussain Shah, Babiker Saad Almugadam, Qismat Shakeela, Shehzad Ahmad
Peer Reviewers Wafa Babiker; Asghar Fazaeli
LATEST VERSION PUBLISHED 18 Jun 2019
https://doi.org/10.12688/f1000research.18892.1
Research Article metrics
Age, prostate volume, prostate-specific antigen and prostate-specific antigen density as predictor factors in results of transrectal ultrasonography-guided prostate biopsy
[version 1; peer review: 1 approved with reservations]
Prima Ciko Ade Putra, Rainy Umbas, Agus Rizal Ardy Hariandy Hamid, Chaidir Arif Mochtar
Peer Reviewers Sebastiaan Remmers and Roobol MJ
PUBLISHED 17 Jun 2019
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