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https://doi.org/10.12688/f1000research.4831.1
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FALCON: a software package for analysis of nestedness in bipartite networks
[version 1; peer review: 2 approved]
Stephen J. Beckett, Chris A. Boulton, Hywel T. P. Williams
Peer Reviewers C. Patrick Doncaster; Justin R. Meyer
PUBLISHED 06 Aug 2014
https://doi.org/10.12688/f1000research.3681.2
Method Article metrics
Revised
Developing sustainable software solutions for bioinformatics by the “Butterfly” paradigm
[version 2; peer review: 2 approved]
Zeeshan Ahmed, Saman Zeeshan, Thomas Dandekar
Peer Reviewers Paul Vauterin; Wolfgang Mueller
LATEST VERSION PUBLISHED 01 Aug 2014
https://doi.org/10.12688/f1000research.4572.1
Software Tool Article metrics
GeneMANIA: Fast gene network construction and function prediction for Cytoscape
[version 1; peer review: 2 approved]
Jason Montojo, Khalid Zuberi, Harold Rodriguez, Gary D. Bader, Quaid Morris
Peer Reviewers Giovanni Scardoni; Rosalba Giugno
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4521.1
Software Tool Article metrics
BridgeDb app: unifying identifier mapping services for Cytoscape
[version 1; peer review: 2 approved]
Jianjiong Gao, Chao Zhang, Martijn van Iersel, Li Zhang, Dong Xu, Nikolaus Schultz, Alexander R. Pico
Peer Reviewers Benno Schwikowski; Olivier Elemento
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4524.1
Software Tool Article metrics
KEGGscape: a Cytoscape app for pathway data integration
[version 1; peer review: 1 approved, 2 approved with reservations]
Kozo Nishida, Keiichiro Ono, Shigehiko Kanaya, Koichi Takahashi
Peer Reviewers Matthew DeJongh; Egon Willighagen; Melissa Cline
  • Funder
  • Japan Science and Technology Agency
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4573.1
Software Tool Article metrics
Development and use of the Cytoscape app GFD-Net for measuring semantic dissimilarity of gene networks
[version 1; peer review: 2 approved]
Juan J. Diaz-Montana, Norberto Diaz-Diaz
Peer Reviewers Cristina Rubino Escudero; Alexander Pico
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4536.1
Software Tool Article metrics
Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results
[version 1; peer review: 2 approved]
Ruth Isserlin, Daniele Merico, Veronique Voisin, Gary D. Bader
Peer Reviewers Nathan Salomonis; Florian Markowetz
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.3714.1
Opinion Article metrics
New forms of checks and balances are needed to improve research integrity
[version 1; peer review: 2 approved, 1 not approved]
Elizabeth Iorns, Christin Chong
Peer Reviewers Andrew D. Chalmers; Ivan Oransky; David Soll
PUBLISHED 28 May 2014
https://doi.org/10.12688/f1000research.3-60.v2
Research Article metrics
Revised
An image-based, dual fluorescence reporter assay to evaluate the efficacy of shRNA for gene silencing at the single-cell level
[version 2; peer review: 2 approved]
Shin-ichiro Kojima, Gary G. Borisy
Peer Reviewers Kenneth Yamada and Matthew Kutys; Wen Lu
LATEST VERSION PUBLISHED 20 May 2014
https://doi.org/10.12688/f1000research.3216.1
Review metrics
An analysis on the entity annotations in biological corpora
[version 1; peer review: 2 approved]
Mariana Neves
Peer Reviewers Roman Klinger; Paloma Martínez
PUBLISHED 25 Apr 2014
https://doi.org/10.12688/f1000research.3-47.v2
Software Tool Article metrics
Revised
FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences
[version 2; peer review: 2 approved]
Leyla Garcia, Guy Yachdav, Maria-Jesus Martin
Peer Reviewers Jim Procter; Andreas Prlic
LATEST VERSION PUBLISHED 09 Apr 2014
https://doi.org/10.12688/f1000research.3784.1
Short Research Article metrics
Prevalence of primary outcome changes in clinical trials registered on ClinicalTrials.gov: a cross-sectional study
[version 1; peer review: 3 approved]
Sreeram V. Ramagopalan, Andrew P. Skingsley, Lahiru Handunnetthi, Michelle Klingel, Daniel Magnus, Julia Pakpoor, Ben Goldacre
Peer Reviewers Janet Wale; Deborah Korenstein; Steven Julious
PUBLISHED 26 Mar 2014
https://doi.org/10.12688/f1000research.3-40.v2
Commentary metrics
Revised
Drugs acting on central nervous system (CNS) targets as leads for non-CNS targets
[version 2; peer review: 2 approved, 1 approved with reservations]
Prashant S. Kharkar
Peer Reviewers Vijay Gokhale; Evans Coutinho; Hariprasad Vankayalapati
LATEST VERSION PUBLISHED 21 Mar 2014
https://doi.org/10.12688/f1000research.3713.1
Data Article metrics
Compound data sets and software tools for chemoinformatics and medicinal chemistry applications: update and data transfer
[version 1; peer review: 3 approved]
Ye Hu, Jürgen Bajorath
Peer Reviewers Ajay Jain; Chris J. Swain; Patrick Walters
PUBLISHED 11 Mar 2014
https://doi.org/10.12688/f1000research.2-281.v2
Research Article metrics
Revised
Rapid and inexpensive body fluid identification by RNA profiling-based multiplex High Resolution Melt (HRM) analysis
[version 2; peer review: 2 approved]
Erin K. Hanson, Jack Ballantyne
Peer Reviewers Gustavo J. Gutierrez Gonzalez and Chiranjeevi Bodda; Titia Sijen
LATEST VERSION PUBLISHED 26 Feb 2014
https://doi.org/10.12688/f1000research.3-36.v2
Data Article metrics
Revised
Matched molecular pair-based data sets for computer-aided medicinal chemistry
[version 2; peer review: 4 approved]
Ye Hu, Antonio de la Vega de León, Bijun Zhang, Jürgen Bajorath
Peer Reviewers Ajay Jain; Peter Ertl; Patrick Walters; Shana Posy
LATEST VERSION PUBLISHED 21 Feb 2014
https://doi.org/10.12688/f1000research.2-217.v2
Method Article metrics
Revised
MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data
[version 2; peer review: 3 approved]
Guillermo Barturen, Antonio Rueda, José L. Oliver, Michael Hackenberg
Peer Reviewers Michael B. Stadler; Jörn Walter; Felix Krueger
LATEST VERSION PUBLISHED 21 Feb 2014
https://doi.org/10.12688/f1000research.3-56.v1
Editorial metrics NOT PEER REVIEWED
The BioJS article collection of open source components for biological data visualisation
[version 1; peer review: not peer reviewed]
Manuel Corpas
PUBLISHED 13 Feb 2014
https://doi.org/10.12688/f1000research.3-50.v1
Software Tool Article metrics
PPI layouts: BioJS components for the display of Protein-Protein Interactions
[version 1; peer review: 2 approved]
Gustavo A. Salazar, Ayton Meintjes, Nicola Mulder
Peer Reviewers Laurent Gatto; Hagen Blankenburg
PUBLISHED 13 Feb 2014
https://doi.org/10.12688/f1000research.3-49.v1
Web Tool metrics
treeWidget: a BioJS component to visualise phylogenetic trees
[version 1; peer review: 1 approved, 1 approved with reservations]
Fabian Schreiber
Peer Reviewers Jaime Huerta-Cepas; Stephen A. Smith
PUBLISHED 13 Feb 2014
601-620 of 638 ARTICLES
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