All Research Articles

61-80 of 638 ARTICLES
https://doi.org/10.12688/f1000research.74416.2
Software Tool Article metrics
Revised
BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Oliver M. Crook; Andrew McDavid; Michel S Naslavsky
  • Funders
  • Cancer Research UK
  • University of Edinburgh
  • European Molecular Biology Laboratory
LATEST VERSION PUBLISHED 07 May 2024
https://doi.org/10.12688/f1000research.147631.1
Research Article metrics
Analyzing a series of ligands against malaria through the application of molecular docking, molecular quantum similarity, and reactivity indices
[version 1; peer review: 1 approved with reservations, 1 not approved]
Peer Reviewers Tawanda Zininga; Ezekiel Adebiyi and Yagoub Adam
  • Funder
  • Tecnologico
PUBLISHED 02 May 2024
https://doi.org/10.12688/f1000research.127348.2
Software Tool Article metrics
Revised
CircSeqAlignTk: An R package for end-to-end analysis of RNA-seq data for circular genomes
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Eric Soler and Mohammad Salma; Xueyi Dong; Alexander Zelikovsky and Bikram Sahoo
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 30 Apr 2024
https://doi.org/10.12688/f1000research.124059.2
Software Tool Article metrics
Revised
LiftoffTools: a toolkit for comparing gene annotations mapped between genome assemblies
[version 2; peer review: 2 approved]
Peer Reviewers Adam Frankish; Mark Borodovsky
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 29 Apr 2024
https://doi.org/10.12688/f1000research.136683.2
Software Tool Article metrics
Revised
Lessons learned: overcoming common challenges in reconstructing the SARS-CoV-2 genome from short-read sequencing data via CoVpipe2
[version 2; peer review: 2 approved]
Peer Reviewers Wolfgang Maier; Sondes Haddad-Boubaker
  • Funder
  • European Centre for Disease Prevention and Control
LATEST VERSION PUBLISHED 16 Apr 2024
https://doi.org/10.12688/f1000research.126215.2
Method Article metrics
Revised
Bayesian Multi-View Clustering given complex inter-view structure
[version 2; peer review: 2 approved]
Peer Reviewers Sara Mostafavi; Max Moldovan
  • Funders
  • Microsoft
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 29 Feb 2024
https://doi.org/10.12688/f1000research.125325.2
Software Tool Article metrics
Revised
Librarian: A quality control tool to analyse sequencing library compositions
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Andrew Keniry; Konstantin Okonechnikov; Karim Gharbi
  • Funder
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 24 Jan 2024
https://doi.org/10.12688/f1000research.135250.2
Software Tool Article metrics
Revised
DrosOMA: the Drosophila Orthologous Matrix browser
[version 2; peer review: 4 approved]
Peer Reviewers Berend Snel; Daofeng Li; Jung-Wan Mok; Elise Parey
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 16 Jan 2024
https://doi.org/10.12688/f1000research.110072.4
Research Article metrics
Revised
In silico comparison between the mutated and wild-type androgen receptors and their influence on the selection of optimum androgenic receptor blockers for the treatment of prostate cancer
[version 4; peer review: 3 approved]
Peer Reviewers Zarrin Basharat; Ahmed A J Mahmood; Mahmoud A. Al-Sha'er
  • Funder
  • The author(s) declared that no grants were involved in supporting this work.
LATEST VERSION PUBLISHED 11 Jan 2024
https://doi.org/10.12688/f1000research.129958.4
Research Article metrics
Revised
The first released available genome of the common ice plant (Mesembryanthemum crystallinum L.) extended the research region on salt tolerance, C3-CAM photosynthetic conversion, and halophilism
[version 4; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Qijie Guan; Xin-Guang Zhu; Zbigniew Miszalski
  • Funder
  • JSPS KAKENHI
LATEST VERSION PUBLISHED 04 Jan 2024
https://doi.org/10.12688/f1000research.142165.1
Research Article metrics AWAITING PEER REVIEW
A survey into the contribution of regional/national pathogen data platforms and on the resources needed to develop and maintain them
[version 1; peer review: awaiting peer review]
Peer Reviewers Invited
  • Funder
  • Horizon 2020
PUBLISHED 14 Dec 2023
https://doi.org/10.12688/f1000research.143015.1
Editorial metrics NOT PEER REVIEWED
BOSC 2023, the 24th annual Bioinformatics Open Source Conference
[version 1; peer review: not peer reviewed]
  • Funders
  • IXXI/MSH-LSE/BIOSYL 2023
  • Director, Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy
  • National Human Genome Research Institute
PUBLISHED 07 Dec 2023
https://doi.org/10.12688/f1000research.134078.2
Method Article metrics
Revised
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Michael D Morgan; Koen Van den berge; Anna Alemany, Xuan Quy Nguyen and Noëlle Dommann
  • Funders
  • National Health and Medical Research Council
  • Chan Zuckerberg Initiative
  • Medical Research Future Fund
LATEST VERSION PUBLISHED 10 Nov 2023
https://doi.org/10.12688/f1000research.123714.2
Research Article metrics
Revised
Identification of prognostic biomarkers of invasive ductal carcinoma by an integrated bioinformatics approach
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Xingxin Pan; Russell Hamilton
LATEST VERSION PUBLISHED 30 Oct 2023
https://doi.org/10.12688/f1000research.23805.2
Brief Report metrics
Revised
Analyses of spike protein from first deposited sequences of SARS-CoV2 from West Bengal, India
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Pawan Kumar Maurya; Jalaj Gupta; Nicolas Cuburu
LATEST VERSION PUBLISHED 27 Sep 2023
https://doi.org/10.12688/f1000research.139488.1
Software Tool Article metrics
Scalable and versatile container-based pipelines for de novo genome assembly and bacterial annotation.
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Abdolrahman Khezri; Abhinav Sharma and Emilyn Costa Conceição; Austin G Davis-Richardson
  • Funders
  • Scholarship by Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
  • Grant by Fundação de Amparo à Pesquisa do Distrito Federal (FAP-DF)
PUBLISHED 25 Sep 2023
https://doi.org/10.12688/f1000research.131861.2
Research Article metrics
Revised
Single-cell transcriptional uncertainty landscape of cell differentiation
[version 2; peer review: 2 approved]
Peer Reviewers Alessandro Giuliani; Geneviève Dupont
  • Funders
  • Swiss National Science Foundation
  • Agence Nationale de la Recherche
LATEST VERSION PUBLISHED 20 Jul 2023
https://doi.org/10.12688/f1000research.132106.2
Research Article metrics
Revised
Nigella sativa L. seed extracts promote wound healing progress by activating VEGF and PDGF signaling pathways: An in vitro and in silico study
[version 2; peer review: 3 approved, 1 approved with reservations]
Peer Reviewers Balasubramani Ravindran; Monica Mironescu; Viji Rajendran; Vinothkannan Ravichandran
  • Funders
  • Center of Excellence in Green Materials for Industrial Application
  • Chulalongkorn University
LATEST VERSION PUBLISHED 21 Jun 2023
https://doi.org/10.12688/f1000research.132587.2
Software Tool Article metrics
Revised
CRUMB: a shiny-based app to analyze rhythmic feeding in Drosophila using the FLIC system
[version 2; peer review: 2 approved]
Peer Reviewers Abhilash Lakshman; Daniel J. Cavanaugh
  • Funders
  • Pew Charitable Trusts
  • National Institute of Diabetes and Digestive and Kidney Diseases
LATEST VERSION PUBLISHED 19 Jun 2023
https://doi.org/10.12688/f1000research.132538.1
Research Article metrics
Discordant results among major histocompatibility complex binding affinity prediction tools
[version 1; peer review: 2 approved with reservations, 1 not approved]
Peer Reviewers André Leier; Michael E Birnbaum; Nikolaos G Sgourakis and Sagar Gupta
PUBLISHED 07 Jun 2023
61-80 of 638 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
Sign In
If you've forgotten your password, please enter your email address below and we'll send you instructions on how to reset your password.

The email address should be the one you originally registered with F1000.

Email address not valid, please try again

You registered with F1000 via Google, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Google account password, please click here.

You registered with F1000 via Facebook, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Facebook account password, please click here.

Code not correct, please try again
Email us for further assistance.
Server error, please try again.